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[Cancer Research 66, 9428-9436, October 1, 2006]
© 2006 American Association for Cancer Research

Molecular Biology, Pathobiology, and Genetics

High-resolution Global Genomic Survey of 178 Gliomas Reveals Novel Regions of Copy Number Alteration and Allelic Imbalances

Yuri Kotliarov1, Mary Ellen Steed1, Neil Christopher1, Jennifer Walling1, Qin Su1, Angela Center1, John Heiss2, Mark Rosenblum3, Tom Mikkelsen3, Jean C. Zenklusen1 and Howard A. Fine1

1 Neuro-Oncology Branch, National Cancer Institute; 2 National Institutes of Neurological Disorder and Stroke, NIH, Bethesda, Maryland and 3 Departments of Neurology and Neurosurgery, Hermelin Brain Tumor Center, Henry Ford Hospital, Detroit, Michigan

Requests for reprints: Jean C. Zenklusen, Neuro-Oncology Branch, National Cancer Institute, 37 Convent Drive, Room 1142B, Bethesda, MD 20892-4254. Phone: 301-451-2144; Fax: 301-480-4743; E-mail: jz44m{at}mail.nih.gov.

Primary brain tumors are the fourth leading cause of cancer mortality in adults under the age of 54 years and the leading cause of cancer mortality in children in the United States. Therapy for the most common type of primary brain tumors, gliomas, remains suboptimal. The development of new and more effective treatments will likely require a better understanding of the biology of these tumors. Here, we show that use of the high-density 100K single-nucleotide polymorphism arrays in a large number of primary tumor samples allows for a much higher resolution survey of the glioma genome than has been previously reported in any tumor type. We not only confirmed alterations in genomic areas previously reported to be affected in gliomas, but we also refined the location of those sites and uncovered multiple, previously unknown regions that are affected by copy number alterations (amplifications, homozygous and heterozygous deletions) as well as allelic imbalances (loss of heterozygosity/gene conversions). The wealth of genomic data produced may allow for the development of a more rational molecular classification of gliomas and serve as an important starting point in the search for new molecular therapeutic targets. (Cancer Res 2006; 66(19): 9428-36)




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