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Molecular Biology and Genetics |
Division of Molecular Biology, The Netherlands Cancer Institute, 1066 CX Amsterdam [M. K., M. v. d. L., M. d. H., P. B.], and Department of Neurology, Academic Medical Center, 1105 AZ Amsterdam [F. B.], the Netherlands
| ABSTRACT |
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| INTRODUCTION |
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Other members of the ABC transporter family that might contribute to drug resistance in human cancer cells include cMOAT or MRP2 (10, 11, 12, 13) , ABC-C (14) , TAP (15) , ARA (16 , 17) , and ABC-2 (18) . The genes encoding these proteins are overexpressed in some MDR or cisplatin-resistant tumor cell lines. Studies with mutant rats (TR-/GY or EHBR), which lack the MRP2 protein in the canalicular membrane of hepatocytes, have shown that the substrate specificity of MRP2 is very similar to that of MRP1 (reviewed in Refs. 19 and 20) . MRP2 is also able to transport various anticancer drugs (13 , 21 , 22) .
Besides MRP1 and MRP2, there are at least four more MRP homologues expressed in humans, called MRP3, MRP4, MRP5, and MRP6 (11) . We found MRP3 and MRP5, but not MRP4, to be overexpressed in some resistant cell lines, but no correlation was found thus far between their expression and the resistance of these cell lines (11) . An additional MRP gene, here called MRP6, was uncovered recently by the ongoing human genome sequencing project.4 The MRP6 gene is located immediately next to MRP1 on chromosome 16p13. The 3' end of the predicted protein sequence of MRP6 is almost identical to the recently identified ARA protein (17) . To investigate a possible role of MRP6 in drug resistance, we examined the same panel of (multi)drug-resistant cell lines analyzed previously for MRP15 (11) . We found that the overexpression of MRP6 or the ARA part of this gene is invariably associated with amplification of the adjacent MRP1 gene. MRP6 does not appear to contribute to the resistance of the cell lines analyzed.
| MATERIALS AND METHODS |
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Cloning and Sequencing of MRP6 cDNA.
One MRP6 cDNA clone (no. 200946) was obtained from the I.M.A.G.E. consortium (23)
. Additional MRP6 cDNA clones were isolated with RT-PCR using total RNA isolated from human liver and MRP6-specific primers based on the genomic sequence of MRP6 in the database (accession number U91318). The following primers were used to check expression of specific parts of the MRP6 gene: mk78, 5'-GAGCCTGAACCTGCCGCCAC-3'; mk100, 5'-CCTTCTCTCCTGCGTGGATC-3'; mk113, 5'-GAATCAGGAACACTGCGAAG-3'; mk114, 5'-CCCTGTCCAGAGACTGG-3'; mk115, 5'-GCTATTGCCTTGTTGTGC-3'; and mk116, 5'-ATGCCTGGACGCCCAAGG-3'. cDNA clones were sequenced using the ABI 377 automatic sequencer. Sequence analysis was done using the GCG package of Wisconsin University, version 9.1 (24)
. The MRP6 cDNA sequence has been deposited with GenBank under accession number AF076622.
RNA.
Cytoplasmic RNA from cell lines was isolated by a NP40 lysis procedure (25)
. Total cellular RNA from tissue samples obtained during surgery or autopsy was isolated by acid guanidinium isothiocyanate-phenol-chloroform extraction (26)
. Poly(A)+ RNA was purified using Dynabeads (Dynal, Oslo, Norway).
RNase Protection Assays.
By PCR amplification of MRP6 cDNA, two fragments were generated that were used as RNase protection probes. The 5' cDNA probe of 259 bp was generated using the MRP6 cDNA clone no. 200946 from the I.M.A.G.E. consortium and primers mk78 5'-GAGCCTGAACCTGCCGCCAC-3' (forward primer) and mk79 5'-GGAGTCTACTTTAAGACTTCACC-3' (reverse primer). This MRP6 cDNA clone contains, besides correct exon sequences, part of the intron sequence between exons 2 and 3 and represents part of an incomplete spliced MRP6 mRNA. The 5' probe was made such that when this incomplete spliced mRNA is present in cells or tissues, a fragment of 259 bp will be detected, but when the mRNA is spliced correctly, a fragment of 168 bp, corresponding to nucleotides 75242 (GenBank accession number AF076622) will be detected. The 3' cDNA probe of 237 bp, corresponding to nucleotides 30193255, was generated with RT-PCR using total RNA isolated from human liver and the primers mk80 5'-CCATTGGGCTGTTTGCCTCC-3' (forward primer) and mk81 5'-GGCTGACCTCCAGGAGTCC-3' (reverse primer). This 3' probe also maps within the ARA cDNA sequence (GenBank accession number X95715). Both fragments were cloned into pGEM-T (Promega Corp., Madison, WI), and the sequences were confirmed. For RNase protection assays,
-32P-labeled RNA transcripts were transcribed from either NcoI (3')- or SphI (5')-linearized plasmids, using Sp6 RNA polymerase. For MRP1 RNA detection, a 244-bp MRP1 cDNA fragment was used [nucleotide positions 239483 (27)
]. RNase protection assays were carried out according to Zinn et al. (28)
, modified by Baas et al. (29)
. Protected probes were visualized by electrophoresis through a denaturing 6% acrylamide gel, followed by autoradiography. In all experiments, a probe for
-actin (30)
was included as control for RNA input. The amount of MRP1 and MRP6 RNA relative to the amount of
-actin RNA was calculated using a phosphorimager (Fuji BAS 2000, TINA 2.08b).
Southern Blot Analysis.
Genomic DNA was isolated from cell lines as described by Miller et al. (31)
. DNA (10 µg) was digested with the restriction enzyme BamHI, and 10 µg of each digest were separated by electrophoresis in a 0.8% agarose gel. Separated DNA was transferred to Hybond-N nylon membrane, and hybridization was carried out as described previously (25)
using either MRP1 or MRP6 cDNA probes.
| RESULTS |
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EST Database.
Our search of the EST database (dbEST; Ref. 40
) with the MRP6 cDNA sequence yielded no EST sequences derived from the 3' end of the coding region of MRP6 cDNA. This is remarkable because most cDNA libraries in the EST database were made with oligo-dT primers. As a consequence, most EST sequences in dbEST correspond to the 3' ends of genes. This was also found when we searched the database for the other MRP homologues, MRP25. Only a few EST sequences were found derived from the 3' untranslated region of MRP6, which overlap with the 3' untranslated region sequence of ARA (17)
, but most EST sequences came from the 5' end of MRP6. Almost all overlapping EST sequences containing exons 1 and 2 of MRP6 (9 of 10 clones, all from a fetal liver spleen cDNA library) also contained part of the sequence of intron 2. This could be due to incomplete splicing of the MRP6 RNA.
Tissue Distribution of MRP6 RNA.
To examine the expression of MRP6 RNA in various human tissues and to see whether ARA and MRP6 are differentially expressed, we made two different RNase protection probes to detect ARA and/or MRP6 RNA expression. The 3' probe (C in Fig. 1
) detected both ARA and MRP6 RNA, whereas the 5' probe (D in Fig. 1
) detected only MRP6 RNA. The 5' probe allowed us to see both the incompletely spliced MRP6 RNA, containing part of intron 2, found in the fetal liver cDNA library, and the completely spliced MRP6 RNA.
With both probes, a similar expression pattern was obtained in all tissues (Fig. 3)
, indicating that ARA is not expressed separately from the MRP6 gene. High expression of MRP6 RNA was found in kidney and liver and low to very low expression levels in most other tissues. Only a few tissues (spleen, testis, bladder, heart, brain, and tonsil) contained no detectable MRP6. In all tissues with MRP6 RNA expression, both the incompletely and completely spliced forms were detected with the 5' probe, mostly in more or less equal amounts (Fig. 3B)
. Some tissues contained high levels of incompletely spliced MRP6 (stomach, salivary gland, thyroid gland, and ovary), others (liver and kidney) had lower levels. Besides the two protected fragments mentioned, we always detected in all tissues with the 5' probe a third protected fragment with a size between the other two fragments (Fig. 3B)
. This probably comes from another incompletely spliced form of the MRP6 RNA. Expression of MRP6 is relatively low, even in liver, and we have been unable to detect full-length mRNA of the expected size on blots, using either total RNA or poly(A)+ RNA.
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Amplification of MRP1 and MRP6.
Southern blots made with BamHI-digested genomic DNA of the cell lines overexpressing MRP1 and MRP6 were hybridized with 5' and 3' cDNA probes of MRP1 and MRP6. The MRP1 gene is amplified in all doxorubicin-resistant cell lines (GLC4/ADR, COR-L23/ADR, HL60/ADR, and MOR/R), as reported before (27
, 41, 42, 43)
. Fig. 5A
shows the results with the 3' probe. The results with the 5' probe were similar (data not shown and Table 2
).
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Using the 5' cDNA probe of MRP6 (Fig. 5C)
, we again found amplification in the GLC4/ADR, the HL60/ADR, and the MOR/R cells, but this time also in the COR-L23/ADR cells. This contrasts with the results obtained with the 3' cDNA probe, which detected no amplification in the COR-L23/ADR cells (Fig. 5B
and Table 2)
. The amplified BamHI fragment in the COR-L23/ADR cells is a little smaller than in the parental COR-L23 cells, indicating a possible rearrangement in the MRP6 gene in these cells as well. This amplification pattern agrees with the detected overexpression of MRP6 using the 5' probe for RNase protection (Fig. 4B
and Table 2)
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| DISCUSSION |
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Expression of MRP6 in Normal Tissues.
The analysis of MRP6 expression is complicated by the fact that this gene yields multiple transcripts. As we have shown here, the recently identified ARA gene actually represents the 3' end of the MRP6 gene. In theory, the ARA cDNA could therefore have been derived from a MRP6 splice variant. However, we find with 3' and 5' probes similar levels of MRP6 RNA in normal tissues (Fig. 3)
, making it unlikely that the ARA part is expressed separately from the complete MRP6 gene. In addition, our analysis of the EST database showed that several 5' end-derived MRP6 transcripts contain unspliced intron sequences. Our 5' RNase protection probe was constructed to allow detection of both incompletely and completely spliced transcripts. In all normal tissues and cell lines with MRP6 expression, both forms of MRP6 RNA were detected with this probe (Fig. 3B)
. Only the ratio between the unspliced and spliced forms differed between tissues. It is unlikely that the unspliced form gives rise to a functional protein, because there is no open reading frame in the sequence of intron 2. The physiological role of MRP6 remains unknown. The high level of MRP6 expression in the excretory organs liver and kidney is compatible with a role in cellular detoxification by secretion of GSH S-conjugates or other organic anions, as has been shown for MRP1 and MRP2.
Expression of MRP6 in Resistant Cell Lines.
Our analysis of a panel of MDR and cisplatin-resistant cell lines has provided no indications for involvement of MRP6 in drug resistance. Most cell lines showed no or only very low MRP6 RNA levels. Overexpression of MRP6 was only detected in doxorubicin-resistant lung cancer cell lines known to have high overexpression of MRP1 (27
, 41, 42, 43)
. In each case, however, the overexpression is associated with coamplification of MRP1 and MRP6. In the GLC4/ADR and MOR/R cell lines, the entire MRP6 gene appears to be amplified, and the amplified gene yielded equal levels of transcript detected with 3' and 5' RNase protection probes (Fig. 4
and Table 2)
, although the levels are very low in the MOR/R cell line. The amplicon in the GLC4/ADR gene is large enough to contain both genes (41
, 42)
. In the other cell lines, the MRP6 gene is also amplified but rearranged in some (HL60/ADR) or all (COR-L23/ADR) amplicons (Fig. 5
and Table 2)
. This follows from the abnormal restriction fragments derived from the amplicon (Fig. 5)
, the unequal levels of transcript detected by 3' and 5' probes (Fig. 4
and Table 2
), and amplification of only the 3' part (HL60/ADR) or the 5' part (COR-L23/ADR) of the MRP6 gene (Fig. 5
and Table 2
). In other doxorubicin-resistant cell lines that overexpress MRP1 without amplification of the gene, like the 30.3M cell line (42)
, we did not detect any overexpression of MRP6 (data not shown). On the basis of these results, we conclude that overexpression of (part of) MRP6 is only the consequence of its coamplification with the MRP1 gene and that MRP6 does not contribute to resistance in the cell lines analyzed here.
The ARA Gene.
Our results also clarify the nature and significance of the ARA gene (16
, 17)
. We show here that ARA mainly contains the 3' end of the MRP6 gene. Its amplification in resistant cells can be explained by coamplification with MRP1. Moreover, the published ARA cDNA sequence (17)
starts with 160 nucleotides derived from MRP1. Therefore, it represents a jumbled MRP1-MRP6 fusion mini cDNA. It is possible that amplification of the MRP1 and MRP6 genes in the CCRF-CEM/E1000 cell line, used to identify ARA (17)
, was accompanied by complex rearrangements resulting in some amplicons encoding the fusion mini-gene. Cloning/sequencing artifacts could also provide an explanation. Whatever the origin of ARA, it is unlikely that it could encode any protein contributing to drug resistance, because the mRNA, if translated, would only encode a fragment of MRP6 containing the last five transmembrane domains and one ATP-binding site.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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1 Supported by Grant NKI 94775 from the Dutch Cancer Society. ![]()
2 To whom requests for reprints should be addressed, at Division of Molecular Biology, Plesmanlaan 121, 1066 CX Amsterdam, the Netherlands. Phone: 31 20 512 2880; Fax: 31 20 669 1383. ![]()
3 The abbreviations used are: MDR, multidrug resistance; GSH, glutathione; ARA, anthracycline resistance associated; RT-PCR, reverse transcription-PCR; EST, expressed sequence tag; MRP, multidrug resistance protein; MLP, MRP-like protein. ![]()
4 M. D. Adams, B. J. Loftus, L. Zhou, C. A. Phillips, R. Brandon, J. Fuhrmann, U. J. Kim, A. R. Kerlavage, and J. C. Venter. Human chromosome 16p13 BAC clone CIT987SK-962B4 complete sequence; HTGS phase 3. GenBank accession number U91318, 1997. Unpublished. ![]()
5 M. Kool and P. Borst, unpublished observations. ![]()
6 J. Wijnholds, M. Kool, and P. Borst, unpublished observations. ![]()
7 N. Weigmann. Arabidopsis thaliana mRNA for putative MRP protein. GenBank accession number Y11250, 1998. Unpublished. ![]()
Received 7/27/98. Accepted 10/29/98.
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K. Terashi, M. Oka, H. Soda, M. Fukuda, S. Kawabata, K. Nakatomi, K. Shiozawa, T. Nakamura, K. Tsukamoto, Y. Noguchi, et al. Interactions of Ofloxacin and Erythromycin with the Multidrug Resistance Protein (MRP) in MRP-Overexpressing Human Leukemia Cells Antimicrob. Agents Chemother., June 1, 2000; 44(6): 1697 - 1700. [Abstract] [Full Text] |
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D. M. van der Kolk, E. Vellenga, A. Y. van der Veen, L. Noordhoek, H. Timmer-Bosscha, G. J. Ossenkoppele, R. A. Raymakers, M. Muller, E. van den Berg, and E. G. E. de Vries Deletion of the multidrug resistance protein MRP1 gene in acute myeloid leukemia: the impact on MRP activity Blood, June 1, 2000; 95(11): 3514 - 3519. [Abstract] [Full Text] [PDF] |
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M. Gao, H.-R. Cui, D. W. Loe, C. E. Grant, K. C. Almquist, S. P. C. Cole, and R. G. Deeley Comparison of the Functional Characteristics of the Nucleotide Binding Domains of Multidrug Resistance Protein 1 J. Biol. Chem., April 21, 2000; 275(17): 13098 - 13108. [Abstract] [Full Text] [PDF] |
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J. Madon, B. Hagenbuch, L. Landmann, P. J. Meier, and B. Stieger Transport Function and Hepatocellular Localization of mrp6 in Rat Liver Mol. Pharmacol., March 1, 2000; 57(3): 634 - 641. [Abstract] [Full Text] |
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H. Zeng, L. J. Bain, M. G. Belinsky, and G. D. Kruh Expression of Multidrug Resistance Protein-3 (Multispecific Organic Anion Transporter-D) in Human Embryonic Kidney 293 Cells Confers Resistance to Anticancer Agents Cancer Res., December 1, 1999; 59(23): 5964 - 5967. [Abstract] [Full Text] [PDF] |
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M. A. McAleer, M. A. Breen, N. L. White, and N. Matthews pABC11 (Also Known as MOAT-C and MRP5), a Member of the ABC Family of Proteins, Has Anion Transporter Activity but Does Not Confer Multidrug Resistance When Overexpressed in Human Embryonic Kidney 293 Cells J. Biol. Chem., August 13, 1999; 274(33): 23541 - 23548. [Abstract] [Full Text] [PDF] |
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N. Strazielle and J.-F. Ghersi-Egea Demonstration of a Coupled Metabolism-Efflux Process at the Choroid Plexus as a Mechanism of Brain Protection Toward Xenobiotics J. Neurosci., August 1, 1999; 19(15): 6275 - 6289. [Abstract] [Full Text] [PDF] |
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M. Kool, M. van der Linden, M. de Haas, G. L. Scheffer, J. M. L. de Vree, A. J. Smith, G. Jansen, G. J. Peters, N. Ponne, R. J. Scheper, et al. MRP3, an organic anion transporter able to transport anti-cancer drugs PNAS, June 8, 1999; 96(12): 6914 - 6919. [Abstract] [Full Text] [PDF] |
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J. H. Hooijberg, H. J. Broxterman, M. Kool, Y. G. Assaraf, G. J. Peters, P. Noordhuis, R. J. Scheper, P. Borst, H. M. Pinedo, and G. Jansen Antifolate Resistance Mediated by the Multidrug Resistance Proteins MRP1 and MRP2 Cancer Res., June 1, 1999; 59(11): 2532 - 2535. [Abstract] [Full Text] [PDF] |
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D.-W. Zhang, S. P. C. Cole, and R. G. Deeley Identification of an Amino Acid Residue in Multidrug Resistance Protein 1 Critical for Conferring Resistance to Anthracyclines J. Biol. Chem., April 13, 2001; 276(16): 13231 - 13239. [Abstract] [Full Text] [PDF] |
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R. Mor-Cohen, A. Zivelin, N. Rosenberg, M. Shani, S. Muallem, and U. Seligsohn Identification and Functional Analysis of Two Novel Mutations in the Multidrug Resistance Protein 2 Gene in Israeli Patients with Dubin-Johnson Syndrome J. Biol. Chem., September 28, 2001; 276(40): 36923 - 36930. [Abstract] [Full Text] [PDF] |
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F. Ringpfeil, M. G. Lebwohl, A. M. Christiano, and J. Uitto Pseudoxanthoma elasticum: Mutations in the MRP6 gene encoding a transmembrane ATP-binding cassette (ABC) transporter PNAS, May 23, 2000; 97(11): 6001 - 6006. [Abstract] [Full Text] [PDF] |
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