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Advances in Brief |
Department of Materials and Biosystem Engineering, Faculty of Engineering, Toyama University, Toyama City, 930-8555 Japan [J. S., T. H., M. I.]; and IDI-IRCCS, Research Laboratories, 00167 Rome, Italy [M. G. N., G. R.]
| ABSTRACT |
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160 kb. By screening of a placenta cDNA library using genomic probes derived from the vicinity of TCL1 locus, we have identified a gene coding for a 1.7-kb transcript that is expressed in leukemic cells carrying a t(14;14)(q11;q32) chromosome translocation. The cognate cDNA sequence reveals an open reading frame of 384 nucleotides encoding a Mr 15,000 protein with
30% of homology with both p14TCL1 and p13MTCP1 oncoproteins. The genomic organization of the TML1 locus was characterized, with three exons located 15 kb from and tail-to-tail in relation to TCL1 locus. Because of its location and sequence similarity with TCL1 and MTCP1 oncoproteins, this gene, named TML1 (TCL1/MTCP1-like 1) is a candidate gene that is potentially involved in leukemogenesis. | Introduction |
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400 kb and cluster in two regions (12)
. The centromeric region is mainly involved in inversions, whereas the telomeric region is involved in simple translocations. These two regions enclose a segment of
160 kb. We postulated that, if the oncogene activated by these different rearrangements is the same, it must reside between these two clusters of breakpoints. Within this region, we have previously identified a gene named TCL1 (13)
that is activated and deregulated by the chromosomal translocations and inversions. The sequence of the TCL1 gene revealed that it is highly homologous to that of the MTCP1 (B1) gene, which has been isolated from the breakpoint of t(X;14)(q28;q11) translocation, found in rare cases of AT (14)
. The MTCP1 (B1) gene at Xq28 was also activated by juxtaposing with TCRA/D region at 14q11. The TCL1 and MTCP1 genes encode two homologous proteins, p14TCL1 and p13MTCP1, which share no similarities with any other known proteins. Both TCL1 and MTCP1 transgenic mice developed T-cell leukemia at an old age (15
, 16)
. In contrast to AT patients, who develop evident clonal expansion of T cells by the age of 20 years, the occasional clonal expansion of T cells in TCL1 transgenic mice was not observed until at least 12 months after birth. Furthermore, the size of region affected by translocations with TCR loci (160 kb) is far larger than that of TCL1 locus (<10 kb). These results suggested that there might be an additional gene that contributes to the development of clonal expansion of T cells at a younger age. Thus, we screened human cDNA libraries to look for genes in this affected region. By using a cosmid clone derived from this region as a probe, we were able to identify a novel gene that has significant homology with the TCL1 and MTCP1 genes and is expressed in T-cell leukemias carrying the translocation t(14;14)(q11;q32.1). | Materials and Methods |
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Isolation of Cosmid Clones Surrounding the TCL1 Locus.
A YAC clone, 964D10, was identified from the CEPH mega YAC library (Centre dÉtude du Polymorphisme Humain, France) by screening with PCR using primers corresponding to TCL1 locus. DNA from YAC 964D10 was partially digested with the Sau3AI restriction enzyme and fractionated into 4050-kb fragments by sucrose gradient ultracentrifugation. The resulting DNA fragments were ligated into pMFG2 cosmid vector, which was constructed by introduction of bacteriophage T3 and T7 promoters on both sides of a BamHI site and two NotI sites on both sides of a BamHI site in a pHSG274 vector. The ligated DNA was transformed into Escherichia coli HB101 after in vitro packaging. The colony hybridization was performed by using [32P]dCTP-labeled human CotI DNA as a probe to obtain human cosmid clones.
Direct cDNA Library Screening.
The human placenta cDNA library constructed in
gt10 vector was purchased from Clontech (Palo Alto, CA). Cosmid DNA that was used as a probe was prepared by a standard alkaline lysis method, purified by ethidium bromide-CsCl centrifugation to eliminate any E. coli DNA contamination, and then labeled by nick translation using [32P]dCTP. The labeled cosmid DNA was precipitated with 20 µg of human CotI DNA (Roche Biochemicals, Basel, Switzerland) and 10 µg of pMFG2 vector in ethanol and dissolved in 10 µl of 5x SSC, followed by denaturation in boiling water for 5 min and incubation at 65°C for 1 h. Hybridization of preannealed cosmid probe onto the cDNA library was carried out in a solution of 50% formamide, 4x SSC, 5x Denhardts solution, and 125 µg/ml denatured salmon sperm DNA at 37°C overnight. Filters were washed twice at 55°C for 10 min in 2x SSC and once at 55°C for 10 min in 1x SSC, subjected to a final rinse with 2x SSC at room temperature, and then exposed to Kodak X-ray film for 48 h.
5' RACE.
The 5' RACE was performed by using the Marathon cDNA amplification kit (Clontech), per the manufacturers recommendations. First-strand synthesis of 1 µg of poly(A) RNA from human placenta or a Burkitts lymphoma cell line (Daudi) was performed using a modified lock-docking oligo(dT) primer that consists of two degenerate nucleotide positions at the 3' end. After second-strand synthesis, the cDNA pool was blunt end ligated to the cDNA adaptors. The first PCR was performed with 27-mer sense primer (AP1) specific for the adaptor and TML1-primer 369AS (5'-CTGGCCGGAGGAGAGTAGC-3'). The second round of PCR was performed with a nested 23-mer sense primer (AP2) and TML1-primer 137AS (5'-CGAGGGATTGAACCGCACGAC-3'). The condition for both PCRs was 95°C for 30 s, 55°C for 30 s, and 68°C for 4 min for 2030 cycles. The amplified products were subcloned into a pNoTA/T7 vector using Prime PCR Cloner kit (5 prime-3 prime, Inc. Boulder, CO), and sequenced by dideoxynucleotide chain-termination method. Both strands of the cDNA clones were sequenced.
RT-PCR.
First-strand cDNA synthesis was performed using 1 µg of total RNA with Superscript II reverse transcriptase (Life Technologies, Inc, Gaithersburg, MD) and oligo(dT) as a primer; 10% of the reaction mixture was subsequently used for each single PCR amplification. Amplification of each cDNA from human cell lines and human normal tissues was carried out under the following conditions: denaturing for 1 min at 95°C, annealing for 1 min at 55°C, and elongation for 2 min at 72°C for 30 cycles. The TML1-specific primers TML1 14S (5'-CCCGGTTGCAGACTTGCCATG-3') and TML1 247AS (5'-CTGGCCGGAGGAGAGTAGC-3') and the TCL1-specific primers TCL1 12S (5'-CTGGCTCTTGCTTCTTAGGCGG-3') and TCL1 386AS (5'-GTGCTGCCAAGACCATACATCAGT-3') were used for the amplification. Amplification with the G3PDH-specific primers G3PDH-5' (5'-ACCACAGTCCATGCCATCAC-3') and G3PDH-3' (5'-TCCACCACCCTGTTGCTGTA-3') was performed as a control. The resulting products were detected by staining with ethidium bromide after fractionation of a 6% polyacrylamide gel or a 1.5% agarose gel. The specificity of each amplified product was confirmed by hybridization with digoxigenin-labeled gene-specific oligonucleotide.
In Vitro Translation.
A plasmid, pTML1 ORF, containing full-length TML1 cDNA was linearized by digestion with XhoI and transcribed and translated in vitro using the ECL in vitro translation system (Amersham, Buckinghamshire, England).
Northern Blot Analysis.
Poly(A) RNA was isolated by using PolyATtract system 1000 kit (Promega, Madison, WI). Ten µg of poly(A) RNA were electrophoresed on a 1% agarose gel. RNA was then transferred to nitrocellulose and hybridized with a [32P]dCTP-labeled pTML1 cDNA probe overnight at 37°C in 50% formamide, 5x SSC, 5x Denhardts solution, 0.1% SDS, and 20 µg/ml denatured salmon sperm DNA. This was followed by one wash in 2x SSC-0.1% SDS at room temperature for 10 min, two washes in 0.1x SSC-0.1% SDS at room temperature for 10 min, and one wash in 1x SSC-0.1% SDS at 50°C for 10 min. The filter was wrapped and subjected to autoradiography using Kodak X-ray films (Eastman Kodak, Rochester, NY).
| Results |
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Expression of the TML1 Gene in Tumors and Normal Human Tissues.
To determine whether the isolated gene is deregulated in cells with the t(14;14)(q11;q32) translocation, we carried out a Northern blot analysis comparing the amount of TML1 transcript present in resting PBLs, PHA-activated PBLs, and SupT11 cells [a cell line established from a patient with acute T-lymphocytic leukemia with a t(14;14) chromosomal translocation; Fig. 4a
]. The cDNA clone pPL1 identified an
1.7-kb transcript. We detected similar levels of expression in SupT11 cells and PHA-stimulated PBLs, whereas a very weak signal was detected from resting PBLs. To further investigate the expression profile of TML1 gene, we performed sensitive RT-PCR assays of TML1 and compared the results with those of the TCL1 and G3PDH genes (Fig. 4b)
. No expression was detectable in several other tumor-derived T-cell lines lacking the translocation involved in TML1 gene, such as MOLT-4, Jurkat, and SupT1 cells. Of interest is the fact that SupT1 cells carry an inverted chromosome 14, inv(14)(q11;q32), in which the TCR-
locus is not juxtaposed to TML1 but is positioned in front of the variable segment of immunoglobulin heavy chain gene at 14q32.3. Thus, an inversion of chromosome 14 that does not involve the TML1 locus is unable to deregulate the TML1 gene. The expression profiles of the TML1 and TCL1 genes were quite similar. The concomitant expressions of the TML1 and TCL1 genes were observed in PHA-stimulated PBLs, Burkitts lymphomas, and a T-cell leukemia carrying t(14;14)(q11;q32.1) translocation, whereas expression of neither TML1 nor TCL1 was observed in RNA isolated from a variety of normal human tissues, including kidney, muscle, liver, lung, brain, heart, small intestine, and colon. The solo expression of the TML1 gene was only detected in placenta and testis within the normal tissues examined.
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| Discussion |
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regulatory elements in both types of rearrangements involving 14q32.1. The TML1 gene can be activated by the control elements of the TCR gene, where they are positioned 5' to the TML1 gene, as in inversions, or 3' to TML1, as in translocations. A similar situation has been observed in the TCL1 gene because of its proximity to the TML1 gene (19)
. The expression of the TML1 gene in leukemic T cells with the t(14;14) translocation but not in leukemic T-cell lines with other types of chromosomal rearrangements suggested that this gene becomes deregulated as a consequence of its juxtaposition to the TCRA/D locus. The sequence analysis of the deduced protein of the TML1 gene revealed that p15TML belongs to the third member of TCL1/MTCP1 family. The results of crystal structure analysis indicated that p14TCL1 and p13MTCP1 consist of an eight-stranded antiparallel ß barrels with novel topologies (20 , 21) . Because the sequences in the regions that formed ß strands in p14TCL1 and p13MTCP1 are also well conserved in p15TML1, this protein probably forms structures that are similar to those of the other two proteins. Moreover, it has been reported that purified recombinant p14TCL1 forms dimers in solution (22) . Although further studies are required, it is possible that p15TCL1 also forms homodimers with itself or heterodimers with p14TCL1 in tumor cells coexpressing TML1 and TCL1 gene such as endemic Burkitts or T-cell tumors with 14q32.1 involvement. To date, no information is available to imply the molecular function of TCL1/MTCP1 family. The amino acid sequence similarities among p15TML1, p14TCL1, and p13MTCP1 suggest that their function may be analogous, and they are most probably involved in the control of lymphoid cell proliferation and/or survival.
Except for the expression of TML1 in placenta and testis, the expression pattern of the TML1 gene is well correlated with that of TCL1. This suggests that concomitant expression of both genes may play an important role in the clonal expansion of T cells and leukemogenesis. Thus, it would be interesting to know whether the TML1 gene is capable of forming tumors by itself in transgenic mice or accelerating the clonal expansion and/or tumor formation in combination of double transgenic mice harboring both the TML1 and TCL1 genes, as in clonal T cells and leukemic T-cells with t(14;14) translocations in AT patients.
In conclusion, the TML1 gene is a strong candidate for an oncogene because it is deregulated by translocation with TCR locus, and the deduced protein of TML1 gene has a striking homology with the p14TCL1 and p13MTCP1 oncoproteins.
| ACKNOWLEDGMENTS |
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Note Added in Proof
During submission of this paper, a new gene called TCL1b was reported from the region centromeric to the TCL1 locus (26) . The sequence of TCL1b was almost identical to that of TML1. Thus, we conclude that TCL1b is the same gene as TML1.
| FOOTNOTES |
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1 This work was supported in part by Grant-in-Aid from the Ministry of Education Science and Culture Japan (to M. I.), Associazione Italiana Ricerca sul Cancro and Ministero della Sanitá Italiana (G. R.) and by Grant No. RG-350/96 from Human Frontier Science Program (to M. I. and G. R.). ![]()
2 To whom requests for reprints should be addressed, at Laboratory of Molecular and Cellular Biology, Department of Materials and Biosystem Engineering, Faculty of Engineering, Toyama University, 3190 Gofuku, Toyama City, 930-8555 Japan. E-mail: isobe{at}eng.toyama-u.ac.jp ![]()
3 The abbreviations used are: TCR, T-cell receptor; AT, ataxia-telangiectasia; PBL, peripheral blood lymphocyte; PHA, phytohemagglutinin; YAC, yeast artificial chromosome; RACE, rapid amplification of cDNA ends; RT-PCR, reverse transcription-PCR; ORF, open reading frame. ![]()
Received 3/ 2/99. Accepted 3/30/99.
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