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Immunology |
Telethon Institute of Gene Therapy and Cancer Immunotherapy and Gene Therapy Program, Istituto Scientifico H. S. Raffaele, 20132 Milano, Italy
| ABSTRACT |
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| INTRODUCTION |
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Over the last few years, the use of such tumor-specific effectors has allowed the isolation of several genes encoding tumor antigens (6) . According to the pattern of expression in neoplastic and normal tissues, these antigens can be classified into four classes, which have different degrees of tumor specificity and clinical relevance. The first class comprises antigens encoded by genes expressed in various tumors of different histotypes but not in normal tissues, other than testis and placenta, such as MAGE, GAGE, and BAGE (7, 8, 9) . The second class represents differentiation antigens that are only expressed in melanoma and melanocytes, such as tyrosinase, Melan-A/MART-1, gp100, TRP-1, and TRP-2 (10, 11, 12, 13, 14, 15) . The antigens belonging to the third class are generated by point mutations in genes that are ubiquitously expressed (16, 17, 18) . The fourth class of antigens, which has been defined only recently, is represented by TRP-2-INT2, an antigen shared between melanomas but not expressed in normal cells of the melanocytic lineage (19) .
Tumor antigens belonging to the MAGE family have especially elicited considerable interest because six of them, MAGE-1, -2, -3, -4, -6, and -12, are expressed selectively by a significant proportion of primary and metastatic tumors, including melanomas, lung, bladder, ovarian, and breast carcinomas (7 , 20, 21, 22, 23) .
Clinical trials of vaccination, based on the use of antigenic peptides encoded by MAGE-1 and -3, are in progress in patients affected by melanoma and other neoplastic diseases (3) . Nevertheless, the use of MAGE-2, -4, and -6 proteins as targets for tumor-specific immunotherapy has been hampered by the uncertainty as to whether these proteins can be recognized by specific CTLs of the immune system.
Potential limitations to the wide application of this therapeutic approach are the limited number of characterized CTL epitopes (i.e., tumor antigen peptides and appropriate HLA class I alleles) and the in vivo generation of antigen loss variants that are able to escape the immune response elicited by a monoantigenic vaccine (24) . Indeed, such clinical protocols apply only to patients carrying a tumor expressing a well-known tumor antigen and a defined HLA allele. Unfortunately, a large majority of cancer patients do not fulfill these including criteria. Therefore, identification of new antigenic determinants is a priority because it would increase the number of patients that could benefit from antitumor vaccination protocols.
Here, we report the identification of a new HLA-B*3701-restricted epitope, encoded by homologous regions of the MAGE-1, -2, -3, and -6 genes. The use of identical antigenic peptides derived from different highly homologous proteins, in protocols of vaccination, may represent a useful tool to avoid the generation of antigen loss variants. Moreover, this study presents, for the first time, evidence for the existence of human CTL recognizing peptides derived from MAGE-2 and -6 proteins, which now can be included in the list of possible antigens for targeted immunotherapy of neoplastic disorders.
| MATERIALS AND METHODS |
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Synthetic Peptides.
Synthetic peptides were purchased from Primm (Milano, Italy). Peptides were: MAGE127136 (REPVTKAEML), encoded by codons 127136 of MAGE-1, -2, -3, and -6 genes; and M4127136 (KELVTKAEML) and M12127136 (REPFTKAEML), corresponding to amino acids 127136 encoded by genes MAGE-4 and -12, respectively. Peptides were dissolved to 10 mM in DMSO and diluted further in 0.9% NaCl.
Subcloning of the HLA-B*3701 Allele.
Total RNA was prepared from MSR3 PBLs by the RNeasy Total RNA Kit (Qiagen, Hilden, Germany). cDNA corresponding to 300 ng of total RNA was amplified by PCR using a primer pair suitable for specific amplification and directional cloning of the full-length coding region of HLA-B alleles (generous gift of Dr. Soo Young Yang, Memorial Sloan-Kettering Cancer Center, New York, NY). The 1.1-kb PCR product was subcloned into the eukaryotic expression vector pcDNA3.1 (Invitrogen Corp., Oxon, United Kingdom). Plasmid clones encoding HLA-B*3701 and -B*52011 (the HLA-B37 and -B5 alleles of patient MSR3) were identified using diagnostic restriction enzymes. The HLA-B*3701 gene was then sequenced to verify the correspondence to the published DNA sequence. This plasmid was called pcDNA3.1/B*3701.
Transfection of Melanoma Cell Lines.
Melanoma cell lines were transfected by the calcium phosphate precipitation technique with pcDNA3.1/HLA-B*3701 and selected in G418. Expression of the transfected HLA-B*3701 molecule in stable transfectants was verified by flow cytometry with the HLA-A-, HLA-B-, and HLA-C-specific mAb W6/32.
In Vitro Induction of CTL Line 337.
CTL line 337 was obtained using a protocol previously described by others (25)
, with slight modifications. Briefly, PBLs from patient MSR3 were separated by Ficoll gradient and cultivated (1 x 106-2 x 106 cells/well) with the autologous, irradiated MSR3-B37 melanoma cells (0.5 x 105-1 x 105 cells/well) in 2 ml of IMDM supplemented with 10% human serum, glutamine, and antibiotics. After 3 days of culture, 10 units/ml IL-2 (Chiron, Milan, Italy) and 5 ng/ml IL-7 (Genzyme Corp., Cambridge, MA) were added. Lymphocytes were restimulated weekly with 0.5 x 105 irradiated MSR3-B37 cells and tested in a cytotoxicity assay after three stimulations. After the fifth restimulation, 2 x 106 irradiated LG2-EBV cells were added as feeder cells, and IL-2 was increased to 50 units/ml.
Assay for Cytolytic Activity and Peptide Binding Studies.
Lytic activity of the cytotoxic T-cell lines was tested in a chromium release assay as described previously (26)
. Peptides were tested in chromium release assays: 51Cr-labeled target cells were incubated for 1 h at room temperature in 96-well microplates with various concentration of the peptide before addition of effector cells at a fixed E:T ratio. Binding of peptides M4127136 and M12127136 to the HLA-B*3701 molecule was studied in a competition assay, as described previously (27)
. As standard peptide, we used peptide MAGE127136 (300 nM), recognized by CTL 337. CTLs were used at an E:T ratio of 30:1.
Production of Subfragments of MAGE-1.
Subfragments of MAGE-1 gene (495- and 1072-bp fragments) were obtained by digestion of MAGE-1 cDNA with BglII and EcoRI. After purification on agarose gel, the fragments were cloned into the pcDNA3.1 plasmid. Clones were isolated, plasmid DNA was extracted and transfected into Cos-7 cells along with the HLA-B*3701 gene.
Transfection of Cos-7 Cells and IFN-
Release Assay.
Transfection of Cos-7 cells was performed by the DEAE-dextran-chloroquine method (12)
. Briefly, 1.5 x 104 Cos-7 cells were transfected with 100 ng of plasmid pcDNA3.1/B*3701 and 100 ng of expression vectors containing the cDNA of one of the following genes: MAGE-1, -2, -3, -4, -6, and -12. Transfected Cos-7 cells were tested in a IFN-
assay after 48 h: 5000 responder CTLs, at day 5 after stimulation, were added in 150 µl of IMDM-10% human serum supplemented with 25 units/ml IL-2. After 24 h at 37°C, 100 µl of supernatant were harvested, and the IFN-
concentration was measured using a IFN-
release kit (Genzyme Corp.) according to the manufacturers recommendations.
Retroviral Vector-mediated Gene Transfer of HLA-B*3701 into Me14932.
The retroviral vector B37-CSM, coding for the HLA-B*3701 molecule of patient MSR3, was constructed as described previously (28)
. Briefly, the full-length cDNAs coding for the HLA-B*3701 molecule was cloned under the control of the viral long terminal repeat, whereas the truncated form of the human LNGFR (
LNGFR) was driven by the SV40 promoter. The ecotropic murine fibroblast cell line GP+E86 was transiently transfected with 30 µg of retroviral construct by standard calcium-phosphate method. Infection of the amphotropic murine packaging cell line GP+env Am 12, by supernatant of 48 h cultures of transfected GP+E86 cells, was performed for 4 h in the presence of 8 mg/ml polybrene. Infected packaging cells were immunoselected for
LNGFR expression by magnetic beads (Dynabeads M-450; Dynal A.S., Oslo, Norway) coated with the LNGFR-specific mAb 20.4 (American Type Culture Collection, Rockville, MD). Transduction of Me14932 was performed by cultivation with retrovirus-containing supernatant in the presence of polybrene (8 mg/ml). Five or six rounds of infection of at least 4 h were performed. Efficiency of infection was evaluated by immunofluorescence analysis with the LNGFR-specific mAb 20.4 and with a HLA-Bw4-specific mAb.
RT-PCR Assays.
MAGE-1, -2, -3, -4, -6, and -12 and ß2-m cDNAs were detected by PCR amplification. Reaction mixture contained 5 µl of cDNA suspension, 4 µl of a 10 mM dNTPs mixture (containing each dNTP at 2.5 mM), 5 µl of 10x DNA polymerase buffer (Finnzymes Oy, Espoo, Finland), 2 units of DynaZyme DNA polymerase (Finnzymes Oy), and sterile distilled water up to a 50-µl total reaction volume. For oligonucleotide primer sequences and PCR amplification programs, see Weynants et al. (Ref. 20
; MAGE-1, -2, and -3) and De Plaen et al. (Ref. 29
; MAGE-4, -6, and -12). ß-2m cDNA was amplified using the sense primer ß 5' (5'-AAC CAC GTG ACT TTG TCA CAG C-3') and antisense primer ß 5' (5'-CTG CTC AGA TAC ATC AAA CAT G-3'). PCR amplification was performed for 30 cycles (1 min at 94°C, 30 s at 56°C, and 2 min at 72°C); the expected length of ß-2m amplification product was 230 bp. RNA integrity was tested by PCR with ß-actin-specific oligonucleotide primers (30)
. Samples scored positive when a band of the appropriate size was visible on a agarose gel in the presence of ethidium bromide.
| RESULTS |
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To evaluate the presence on the surface of MSR3-B37 line of tumor-specific antigens, the melanoma cells were tested for their ability to induce tumor-specific cytotoxic effectors and for their susceptibility to lysis by these CTLs. Patients PBLs were in vitro stimulated by MSR3-B37 as described in "Materials and Methods." After three rounds of stimulation, the polyclonal cytotoxic T cell line 337 (CTL 337) specifically lysed the MSR3-B37 cell line but not the untransfected MSR3-mel (Fig. 2)
. Autologous MSR3-EBV cells and PHA-activated T blasts were not recognized (data not shown), suggesting that the epitopes recognized by these CTLs are melanoma-/melanocyte-specific. Indeed, in addition to the autologous melanoma cells, CTL 337 also lysed the HLA-B*3701-positive melanoma line ET1 (Fig. 2)
, suggesting that one or more shared melanoma antigens are recognized.
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Identification of the Antigenic Epitope Recognized by CTL 337.
To identify the antigen recognized by CTL 337, we evaluated the IFN-
release of CTL 337 in the presence of Cos-7 cells transfected with plasmid pcDNA3.1/B*3701, along with cDNA encoding six members of the MAGE family (i.e., MAGE-1, -2, -3, -4, -6, and -12), some of which are expressed by both MSR3-mel and ET1. CTL 337 specifically recognized Cos-7 cells transfected with MAGE-1, -2, -3, and -6 (Fig. 3)
, suggesting that the epitope target of CTL 337 was shared among the four different antigens or that distinct components of the oligoclonal T-cell line were recognizing peptides derived from the four MAGE gene products. A low level of IFN-
was detected in the presence of MAGE-4- and MAGE-12-transfected Cos-7 cells (Fig. 3)
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495 and 1072 bp (Fig. 4)
released by CTL 337 cells in the presence of Cos-7 cells transfected with the 495-bp fragment was comparable to that conferred by the entire MAGE-1 gene (Fig. 4)
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were released by the CTL 337 cells in the presence of Cos-7 cells expressing MAGE-4 and -12 (Fig. 3)Taken together, these data indicate that CTL 337 cells are able to recognize a peptide endogenously processed from MAGE-1, -2, -3, and -6 products. The two peptides, encoded by the same region of MAGE-4 and -12, respectively, are able to bind to HLA-B*3701, but they are not recognized by CTL 337 cells.
CTL 337 Cells Specifically Recognize MAGE-2 and -6 Gene Products.
Until now, there was no evidence of the immunogenicity of MAGE-2- and MAGE-6-encoded proteins in humans. Indeed, peptides encoded by MAGE-1, -3, -4, and -12 have been found to bind to various class I molecules to form antigens recognized by different CTLs, whereas no peptides encoded by the genes MAGE-2 or MAGE-6 have thus far been identified.
To demonstrate that peptide REPVTKAEML could also be processed from MAGE-2 and -6 and presented to CTL 337 cells, we attempted to look for melanoma cell lines expressing MAGE-2 or -6 but none of the other MAGE genes. Unfortunately, expression of the MAGE genes in melanomas is strictly correlated: most of the melanomas that express one member of the MAGE gene family also express the others. Indeed, we were unable to find a melanoma line that selectively expresses MAGE-2, but we succeeded in finding a single melanoma line, Me14932, that selectively expresses MAGE-6 at low level (data not shown).
To verify whether peptide REPVTKAEML is endogenously processed from MAGE-6 products and presented by HLA-B*3701, Me14932 was transduced by a retroviral vector encoding the HLA-B*3701 molecule. As indicated by immunofluorescence staining with a HLA-Bw4-specific mAb, cell surface expression of HLA-B*3701 on a pure population of transduced Me14932 cells was at least 2-fold lower than that of MSR3-B37 melanoma cells (data not shown). CTL 337 cells were able to recognize the Me14932-LB37 line in a cytotoxicity assay, and the level of lysis was increased by the exogenous addition of peptide REPVTKAEML, whereas there was no recognition of the pulsed and unpulsed Me14932 lines (Fig. 7)
. The low levels of lysis of the melanoma Me14932-LB37 might be explained either by weak expression of gene MAGE-6 and by the weak surface expression of HLA-B*3701 molecules.
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| DISCUSSION |
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One major limitation outlined by those studies is the development, in a significant proportion of the treated patients, of tumor variants that fail to express the antigen recognized by tumor-reactive lymphocytes (24) . Those variants can be generated either by loss of the nominal antigen (referred to as antigen loss variants; Refs. 33 and 34 ) or by molecular defects affecting different steps of the antigen presentation pathway (referred to as presentation loss variants; Refs. 35, 36, 37 ). An active intervention of the immune system in the selection of antigen loss and presentation loss variants have been observed in both treated (24) and untreated patients (33 , 38) . However, escape from classical tumor-specific CTLs may be counteracted in vivo by the intervention of different immune effectors. Indeed, tumor cells that have lost expression of some but not all HLA class I molecules can be recognized by a new category of antitumor lymphocytes expressing killer-cell inhibitory receptors (39) , whereas HLA-negative tumor cells can be targeted by NK cells.
The melanoma cell line used in this study belongs to the presentation loss variant class of HLA-negative tumor cells. The molecular defect responsible for the HLA class I phenotypes of MSR3-mel has not yet been identified; however, our melanoma line exhibits barely detectable levels of HLA class I expression by immunofluorescence analysis, which are not sufficient for stimulation of a tumor-specific T-cell response (data not shown). This altered phenotype does not seem to be due to ß-2m or TAP alterations or to deletions of MHC genes but rather to a defect in the transcriptional machinery. Indeed, HLA class I expression in MSR3-mel can be restored by transfection of cDNAs encoding autologous HLA class I alleles.
The HLA-B*3701-transfected cell line (i.e., MSR3-B37) allowed the isolation of HLA-B*3701-restricted and tumor-specific CTLs that recognized a nonapeptide encoded by the same region (i.e., residues 127136) of MAGE-1, -2, -3, and -6 proteins.
To our knowledge, this is the first B*3701-restricted tumor-specific epitope that has been identified thus far. Note that the HLA-B*3701 molecule is present on both lymphocytes and tumor cells of patient MZ2 (7) , from which a large variety of MAGE-specific CTL clones restricted by different HLA class I molecules were isolated (8, 9 , 40, 41, 42) . Those results suggest a subdominant role of HLA-B*3701 in tumor antigen presentation in the MZ2 model that should be overcome in the MSR3 system by the absence on the stimulating cells of a HLA class I molecule other than HLA-B*3701. Indeed, dominance of a given HLA molecule in the tumor-specific stimulation of autologous CTL by melanoma cells has been described in several model systems (39 , 43 , 44) .
Several members of the MAGE gene family are specifically expressed by tumors of various histological types and T-cell defined epitopes encoded by MAGE-1 and -3 have been identified. However, although MAGE-2 and -6 are expressed in a large percentage of tumor samples, thus far no MAGE-2- and MAGE-6-specific CTLs have been isolated. The only suggestion that MAGE-2 behaves like a tumor-antigen comes from the study of Visseren et al. (45) , who demonstrated the immunogenicity of MAGE-2 in a HLA-A*0201Kb transgenic mouse model. Therefore, our study reports the first evidence for an immunogenic potential of MAGE-2 and -6 in humans. Indeed, CTL 337 cells were able to recognize Cos-7 cells transfected with HLA-B*3701 and MAGE-2 or -6 genes. Moreover, a stable HLA-B*3701-positive melanoma line expressing MAGE-6 was recognized, whereas analogous experiments on MAGE-2 and HLA-B*3701-positive melanoma lines could not be performed. It has been suggested that the proteasome specifically digests proteins into polypeptides with defined hydrophobic, basic, or acidic COOH termini, whereas the NH2-terminal cleavage into smaller fragments occurs nonspecifically 810 amino acids further upstream. In view of the presence of hydrophobic residues (M and L) at the COOH-terminus of peptide REPVTKAEML, as well as the high degree of the amino acid sequence homology between MAGE-2 and MAGE-6 in the region around peptide REPVTKAEML, it is tempting to speculate that this peptide might indeed be processed in melanoma cells also from MAGE-2 products. (46 , 47) .
The molecular analysis performed on tumor samples of various histotypes revealed a strong correlation between the expression of different MAGE genes. However, inclusion of MAGE-2 and MAGE-6 in the list of target antigens for cancer immunotherapy has practical implications for the enrollment of patients with ovarian carcinomas. Indeed, 12% of the ovarian carcinoma samples analyzed express MAGE-2 and/or -6, without expressing MAGE-1 and/or -3 genes. On the other side, coexpression of more than one MAGE gene by a given tumor might prevent the development of antigen loss variants during vaccination treatment. Indeed, immune escape from a peptide-induced antitumor response might then be rare, because it would require the occurrence of several independent molecular alterations.
In conclusion, the identification of this new HLA-B*3701-restricted epitope not only increases the number of patients eligible for immunization but also may prove highly efficient for immunotherapy because of reduced risk of tumor escape due to the emergence of antigen loss variants.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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1 This work was supported in part by grants from the Italian Association for Cancer Research (Milan, Italy). ![]()
2 To whom requests for reprints should be addressed, at Telethon Institute of Gene Therapy, Istituto Scientifico H. S. Raffaele, Via Olgettina 58, 20132 Milano, Italy. Phone: 39-2-26432357; Fax: 39-2-26434827; E-mail: traver{at}tigem.it ![]()
3 The abbreviations used are: PBL, peripheral blood lymphocyte; IMDM, Iscoves modified Dulbeccos medium; mAb, monoclonal antibody; IL, interleukin; LNGFR, low-affinity nerve growth factor receptor; ß2-m, ß2-microglobulin. ![]()
Received 11/30/98. Accepted 4/ 1/99.
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