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Molecular Biology and Genetics |
Department of Pathology, Boyer Center for Molecular Medicine, Yale University School of Medicine, New Haven, Connecticut 06536
| ABSTRACT |
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16,200 ) was 84% identical to its human orthologue and contained a structurally unique single baculovirus iap repeat (BIR) and a -COOH-terminus coiled domain instead of a RING finger. Analysis of the 5'-flanking region of the mouse survivin gene revealed a TATA-less promoter containing a canonical CpG island, numerous Sp1 sites, two cell cycle-dependent elements (CDEs), and one cell cycle gene homology region (CHR), typically found in G2-M-expressed genes. Primer extension and S1 nuclease mapping identified three transcription start sites at position -32, -36, and -40 from the initiating ATG. Transfection of survivin promoter-luciferase constructs identified a minimal promoter region within the most proximal 174 bp upstream of the first ATG. Mutagenesis of the CDE/CHR elements and Sp1 sites in this region, alone or in combination, reduced transcriptional activity by 4060% in asynchronously growing cells and abolished cell cycle periodicity in G2-M-synchronized cells. These data demonstrate that cell cycle expression of survivin requires integration of typical CDE/CHR G1 repressor elements and basal transcriptional activity by Sp1. Disruption of these transcriptional requirements may provide an alternative strategy to block the overexpression of survivin in cancer. | INTRODUCTION |
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, and overexpression of Bad and FADD (6, 7, 8)
, certain IAP proteins have been shown to bind and inhibit effector caspase-3 and -7 (9
, 10)
, through a BIR-dependent recognition (11)
. IAP molecules may also play a role in human diseases, as judged by the frequent mutations involving the neuronal apoptosis inhibitor in type I spinal muscular dystrophy (12)
and the cytoprotective effect of neuronal apoptosis inhibitor overexpression on ischemic/hypoxic neuronal death (13)
.
Compelling experimental evidence for a broader role of IAP proteins in human diseases, and cancer in particular, was recently suggested by the identification of the human survivin gene (14)
. Survivin is the smallest member of the IAP gene family, structurally characterized by a single BIR module and a -COOH-terminus
-helix coiled domain (14)
, substituting a canonical RING finger (4)
. Prominently expressed in a variety of apoptosis-regulated organs during embryonic and fetal development (15)
, survivin is undetectable in most normal adult tissues, and becomes abundantly reexpressed in a variety of human cancers in vivo (14)
. Consistent with a potential pathogenetic role of dysregulation of apoptosis in cancer (16)
, survivin expression correlated with unfavorable histology in neuroblastoma (17)
, with p53 abnormalities and coexpression of bcl-2 in gastric cancer (18)
, and with reduced apoptotic index and abbreviated survival in colorectal cancer (19)
. Recent studies have demonstrated that, at variance with previously known apoptosis inhibitors, survivin is expressed in G2-M in a cell cycle-dependent manner, and binds directly to mitotic spindle microtubules (20)
. Consistent with a role of bcl-XL (21)
and p53 (22)
-dependent apoptosis in controlling genetic fidelity in G2-M, these data proposed a role of survivin in a novel apoptotic checkpoint at cell division (20)
.
In this study, we sought to dissect the molecular requirements and evolutionary conservation of this novel antiapoptotic mechanism by elucidating the structure of the mouse survivin locus. We found that the mouse survivin gene has features typical of G2-M-regulated genes and is transcriptionally controlled by the integration of multiple Sp1 sites and cell cycle-dependent G1 repressor elements (23) .
| MATERIALS AND METHODS |
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Isolation of Mouse survivin Genomic DNA Clones.
Genomic DNA was isolated from WEHI164 cells by proteinase K digestion and sequential phenol extraction, according to published protocols. A PCR product of 400 bp was amplified from WEHI genomic DNA with primers msg-P1 (exon I, 5'-GTACCTCAAGAACTACCGCATC-3') and msg-P4 (exon II, 5'-GTCATCGGGTTCCCAGCCTTCC-3') based on the region of high homology between human survivin and a mouse survivin EST sequence 34764. DNA sequence analysis of this PCR product demonstrated identity in putative exon regions with the mouse EST sequence and strong conservation with the human survivin sequence (14)
. A mouse genomic DNA BAC library (Genome Systems, St. Louis, MO) was screened by hybridization with this PCR probe with the isolation of two positive clones, BAC-A20 and BAC-J17 (Fig. 1A)
.
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Southern Blotting, Subcloning, and DNA Sequence Analysis.
Mouse survivin genomic clones BAC-A20 and BAC-J17 were digested with various restriction enzymes, separated on 1% agarose gels and transferred to GeneScreen (DuPont de Nemours, Wilmington, DE) nylon membranes. The membrane was hybridized with a 32P-labeled human survivin cDNA probe or a mouse genomic PCR probe, as described previously (14)
. Radioactive bands identified by autoradiography were excised, inserted in pBluescript KS (Strategene, San Diego, CA), and analyzed for DNA sequence using an Applied Biosystems model 373A DNA sequencing system (Foster City, CA).
Genomic DNA Walking and Intron III Amplification of the Mouse survivin Gene.
Genomic DNA walking for mouse survivin exon IV was carried out with a Genome walking kit (Clontech, Palo Alto, CA), according to the manufacturers specifications. Briefly, two sets of nested primer were synthesized based on the deduced exon IV sequence of human survivin and mouse survivin EST 34764:
The template for DNA walking comprised mouse genomic DNA digested with five restriction enzymes (EcoRV, ScaI, DraI, PvuII, and SspI) and ligated to a linker containing two nested primers, AP-1 and AP-2. A first round of PCR amplification was carried out with primer combination ms-5'walk-1/AP-1 or ms-3'walk-1/AP-1, followed by a second round of amplification with nested primers, ms-5'walk-2/AP-2 or ms-3'walk-2/AP-2. PCR products were separated on 1% agarose gel, purified by GeneClean II (Molecular Research Center, Cincinnati, OH), and sequenced with the Applied Biosystems model 373A DNA sequencing system (Foster City, CA). For extra-long PCR reactions, aliquots of WEHI genomic DNA were mixed with primers msg-P7-1 5'-GAGGAGCATAGAAAGCACTCCC-3' (reverse primer in exon III) and ms-5'walk-1 (forward primer in exon IV, Fig. 1B
) in the presence of increasing concentrations of magnesium. After a 2 min-denaturation at 94°C, 40 cycles of amplification were carried out in a Perkin-Elmer 480 thermal cycler with denaturation at 94°C for 30 s and annealing/extension at 68°C for 20 min, followed by one cycle at 72°C for 20 min. PCR products were subjected to a second round of amplification with the same protocol using nested primers msg-nestP7-1 (5'-CTGGCTGCGCGTTCCTCACT-3') and ms-5'walk-2 (Fig. 1B)
. PCR products were separated on 0.5% agarose gels, transferred onto nylon membranes, and hybridized with a DNA probe specific for intron III in the mouse survivin gene (Fig. 1B)
.
Primer Extension and S1 Nuclease Protection Assay.
A msg-PE oligonucleotide 5'GATGCGGTAGTTCTTGAGGTACAGCTGC-3' (+57 to +30, numbering from the initiating ATG) was synthesized, gel-purified, and 5' end-labeled (10 pmol) in 50 mM Tris-HCl (pH 7.5), 10 mM MgCl2, 5 mM DTT, 0.1 mM spermidine, 3 µl of [
-32P]ATP (3000 Ci/mmol, Amersham, Arlington Heights, IL) and 810 units of T4 polynucleotide kinase (New England Biolabs, Beverly, MA) for 10 min at 37°C. A control primer and dephosphorylated
X174 HinfI DNA fragments (250 ng, DNA markers, Promega) were also 5' end-labeled. For primer extension, 100 fmol of labeled primer were mixed with 12 µg of poly(A)+ RNA, 50 mM Tris-HCl, 50 mM KCl, 10 mM MgCl2, 10 mM DTT, 1 mM dNTPs, and 0.5 mM spermidine for 20 min at 58°C and annealed at room temperature for 10 min. The annealed mixture was combined with a master mixture containing 50 mM Tris-HCl, 50 mM KCl, 10 mM MgCl2, 10 mM DTT, 1 mM dNTPs, 0.5 mM spermidine, 5.6 mM sodium PPi, and 1 unit of AMV reverse transcriptase for 30 min at 42°C. Samples were ethanol-precipitated, suspended in 58 µl of gel loading buffer and separated on a 7-M urea-denaturing polyacrylamide gel. For S1 nuclease protection assay, a msg-P11 oligonucleotide 5'-CTCCAGGAAGGGCCAGTTCTTG-3', (+66 to -87) was synthesized and gel-purified. An antisense DNA probe duplicating 271 nt of the 5' flanking region of the mouse survivin gene was generated with Klenow fragment of DNA polymerase I. Briefly, 0.52 µg aliquots of BglI-digested HindIII fragment of mouse survivin gene in pBluescript in 25 µl were incubated with 30 pmol msg-P11 primer, 50 mM Tris-HCl, 10 mM MgCl2, 200 µM dNTPs, 10 µl of [
-32P]dCTP (3000 Ci/mmol, 10 mCi/ml, Amersham) and 45 units of Klenow fragment (Ambion, Austin, TX) for 3060 min at 37°C. The probe was purified on a 7-M urea denaturing polyacrylamide gel and eluted in 0.5 M ammonium acetate, 1 mM EDTA, and 0.2% SDS at 35°C overnight. The amount of 0.20.5 µg of WEHI cell poly(A)+ RNA mixed with 12 x 105 cpm of gel-purified probe was ethanol-precipitated, resuspended in 10 µl of hybridization solution [80% formamide, 100 mM sodium citrate (pH 6.4), 300 mM sodium acetate, and 1 mM EDTA], denatured for 5 min at 90°C, and incubated at 42°C overnight. The hybridization mixture was incubated with 50 mM sodium acetate (pH 4.5), 200 mM NaCl, 1 mM ZnCl2, 0.5% glycerol, and 10001500 units/ml of S1 nuclease for 30 min at 37°C. Samples were ethanol-precipitated, washed, and separated by electrophoresis on a 7-M urea denaturing polyacrylamide gel.
Generation of Mouse Survivin Promoter/Luciferase Constructs.
Progressive deletion fragments of the 5' flanking region of the mouse survivin gene of 1342 bp, 830 bp, 539 bp, 379 bp, 194 bp, and 158 bp were generated by PCR amplification. A HindIII-generated DNA fragment of the mouse survivin gene was used as a template for amplification with a reverse mspc-3 (5'-CCCAAGCTTCCTCCGCCAAGACGACTCAAAC-3', -17 to -38) primer and each of the following forward primers:
BamHI and HindIII sites are underlined in each oligonucleotide. PCR products were inserted upstream of a luciferase reporter gene in pLuc at BamHI and HindIII sites to obtain pLuc-1342, pLuc-830, pLuc-539, pLuc-379, pLuc-194, and pLuc-158. A 30-nt mouse survivin promoter fragment was generated by annealing two 30-nt DNA oligomers (5'-AATCCTGCGTTTGAGTCGTCTTGGCGGAGG3', -46 to -17, and 5'-CCTCCGCCAAGACGACTCAAACGCAGGATT3', -17 to -46) and then was subcloned upstream of the luciferase reporter gene in pLuc at SmaI sites to obtain pLuc-30. The constructs of pLuc-1342d, pLuc-830d, and pLuc-379d were generated by deleting the proximal DNA sequence from -143 to -68, which contains two contiguous Sp1-like motifs. All of the plasmids were confirmed by DNA sequencing.
Mutagenesis of the Proximal Promoter Region of the Mouse survivin Gene.
A detailed mutagenesis analysis of the proximal mouse survivin promoter was carried out by PCR using mutagenized oligonucleotides. The following constructs were generated:
Each of the mutated 158m1-6 fragments was subcloned upstream of the luciferase reporter gene in pLuc using BamHI and HindIII sites to obtain pLuc-158m1, pLuc-158m2, pLuc-158m3, pLuc-158m4, pLuc-158m5, and pLuc-158m6. The following mutagenized DNA constructs were also generated:
Each of the mutated 158Sp1m1-3 fragments was also inserted in pLuc using BamHI and HindIII sites to obtain pLuc-158Sp1m1, pLuc-158Sp1m2, and pLuc-158Sp1m3. All of the plasmids were independently confirmed by DNA sequencing. The indicated restriction sites BamHI or HindIII are underlined in each mutagenized oligonucleotide.
Liposome-mediated Transient Transfection and Luciferase/ß-Galactosidase Expression Assay.
Cells were transiently transfected with the various mouse survivin promoter constructs by LipofectAMINE. Briefly, cells were seeded in a 12-well plate (12 x 105 cells/well) in 1 ml of complete DMEM growth medium and grown at 5080% confluence. Fifty µl of Opti-MEM-1 (Life Technologies, Inc.) containing 1 µg of various plasmid DNA molecules were mixed with 50 µl of Opti-MEM-1 containing 4 µl of LipofectAMINE reagent for 3045 min at 22°C. Each of the above mixtures was supplied with 350 µl of Opti-MEM-1 and then overlaid onto the cell monolayer, which was preincubated under serum-free conditions for 2030 min. After 46 h incubation at 37°C, the DNA/liposome complex was replaced with complete medium, and luciferase activity was determined within 3648 h from transfection. After two washes with PBS (pH 7.4), cells were solubilized in 60 µl of 1x lysis buffer (Promega) and scraped with a rubber policeman, and 5-µl aliquots of the supernatant were mixed with 10 µl of luciferase assay reagent (Promega) and analyzed on a Lumat luminometer (LB 9510). Alternatively, 10-µl samples were incubated with 10 µl of assay 2x buffer (Promega) in a 96-well plate for 3060 min at 37°C and ß-galactosidase activity was determined by absorbance at A405 nm. Luciferase activity under the various conditions tested was normalized to the value of ß-galactosidase activity used as an internal control.
HeLa Cell Synchronization.
HeLa cells were transiently transfected with the indicated mouse survivin promoter constructs as reported above and synchronized to the various phases of the cell cycle by treatment with 400 µM mimosine (G1), 2 mM thymidine (S phase) and 0.4 µg/ml nocodazole (G2-M) for 16 h at 37°C. Cells were harvested, lysed, and analyzed for ß-galactosidase-normalized luciferase activity as described above. Drug treatment resulted in the synchronization of >75% of HeLa cells in the various phases of cell cycle, as determined by propidium iodide staining and flow cytometry and in agreement with previous observations.
| RESULTS |
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200 bp upstream of a putative exon 1 (Fig. 1B)
-helical COOH terminus, predicted to form a coiled (24)
domain (Fig. 2)
-CCR2, was also isolated from screening of
phage genomic libraries, subcloned, and further characterized. DNA sequence analysis of a 3.5-kb XbaI fragment from
-CCR2 revealed a GAAA expansion repeated 49 times and a region of 437 bp sharing 88% identity with the contiguous sequences of exons III and IV of the survivin gene (not shown). A potential role of
-CCR2 in gene expression and/or its relationship with the mouse survivin locus was not further investigated.
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119,
123,
127 (Fig. 4B)
-32P]ATP end-labeled oligonucleotide from +57 to +30 (Fig. 4A)
89,
93, and
97 in reverse-transcribed WEHI poly(A)+ mRNA (Fig. 4C)
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50% survivin gene expression in G2-M, whereas mutagenesis of the Sp1 site at position -169 almost completely abolished cell cycle periodicity of survivin gene expression in G2-M-synchronized HeLa cells (Fig. 8C)
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| DISCUSSION |
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Consistent with a high degree of evolutionarily conservation of this G2-M apoptotic checkpoint, the mouse survivin gene displayed a four-exon/three-intron organization similar to the human gene (14) , differing only for the size of intron III (>50 kb versus 6.7 kb) and exon IV (513 bp versus 1230 bp). The mouse locus was also located to the telomeric region of chromosome 11E2, reminiscent of the telomeric position of the human survivin gene at 17q25 (27) . Intriguingly, a second survivin-hybridizing locus was also identified. In previous studies, Southern hybridization and Northern blots with single strand-specific probes suggested the existence of multiple survivin-related transcripts potentially originating from head-to-head duplicated gene(s) (27) . Specifically, Southern blots from mouse genomic DNA identified 2 EcoRI fragments of 2 and 6.7 kb, hybridizing with survivin sequences (27) . Here, the 2-kb band was identified as genuinely originating from the mouse survivin locus, whereas the 6.7-kb band comprised a nearly perfect duplication of uninterrupted survivin sequences in exons III and IV. Although consistent with postulated duplication events of survivin sequences (27) , the potential participation of this second locus in gene expression and its topography with respect to the mouse survivin gene have not yet been determined.
For a shorter 3' untranslated region in exon IV, transcription from the mouse survivin gene originates a 852-bp mature RNA as opposed to the larger 1.9-kb human transcript (14)
and encodes a cytoplasmic protein of 140 amino acids with an estimated Mr of 16,200. The mouse survivin protein contained a structurally unique BIR module (4)
, characterized by the three-amino acid insertion Cys46-Pro47-Thr48 separating the two halves of the BIR domain, and exclusively found in human survivin (14)
, and the recently characterized single-BIR IAP molecule, BRUCE (28)
. Sharing an overall 84% identity with the human counterpart, the mouse survivin protein showed conservation of the critical residues Trp67, Pro73, and Cys84 in the BIR module required for apoptosis inhibition (Ref. 20
and unpublished observations),4
and potentially implicated in caspase-3 and -7 recognition (26)
. The second structural features of mouse survivin includes an
-helical-COOH terminus of 40 amino acids predicted to form a coiled structure (24)
instead of a canonical RING finger (4)
.
-helical-coiled coil motifs are frequently found in microtubule-associated proteins (29
, 30)
, potentially stabilizing charged electrostatic interactions with the acidic COOH-terminal domain of tubulin (31)
. Although less charged than its human counterpart, the mouse survivin COOH terminus may also mediate binding to mitotic spindle microtubules at cell division (20)
.
Reminiscent of typical G2-M-expressed, cell cycle-regulated genes (23
, 32)
, the mouse survivin gene contained multiple transcription start sites, a TATA-less, GC-rich promoter region with numerous Sp1 sites, and two CDE (GGCGG) and one CHR (ATTTGAA) G1 repressor elements (23)
. As determined in transfection experiments, a
200-bp region immediately upstream of the initiating ATG was sufficient to direct maximal survivin promoter activity in asynchronously growing HeLa cells, and a 3- to 5-fold increased promoter activity in G2-M-synchronized cultures as compared with G1- or S phase-arrested cells. Although the spacing of the survivin CDE/CHR boxes is different from that of other G2-M-regulated genes (23
, 32)
, deletion and mutagenesis studies identified two Sp1 sites at position -62 and -169, and the CDE/CHR G1 repressor elements (23)
, as critically required for basal and cell cycle periodicity of survivin gene expression in G2-M. Altogether, these data suggest that transient G1 repression mediated by CDE/CHR boxes (23
, 32)
imparts cell cycle periodicity in G2-M to basal transcription of the mouse survivin gene mediated by Sp1.
Through potential interactions with S1 phase-inducer E2F (33) , and Rb-like proteins (34) , zinc finger Sp1 transcription factors regulate expression of a variety of essential genes participating in cell cycle progression, including dihydrofolate reductase, thymidine kinase, and histone H4 (35 , 36) . Sp1 also negatively regulates cell cycle progression through p53-independent transcription of cyclin-dependent kinase inhibitors p21waf-1/cip1 and p15INK4B in response to growth-arresting stimuli, progesterone (37) , butyrate (38) , and transforming growth factor ß (39) . A potential role of Sp1 in chromatin remodeling (40) and maintenance of unmethylated CpG island (41) has also been proposed, whereas disruption of the Sp1 locus in mice resulted in profound developmental abnormalities and embryonic lethality (42) . In this context, it is noteworthy that survivin is abundantly expressed during early mouse embryonic development at E11-11.5 and is prominently distributed in apoptosis-regulated neuronal tissues, including brain, chorioid plexus, hypophysis, and dorsal root ganglion (15) . This is consistent with a prominent role of apoptosis inhibitors, i.e., bcl-2, in developmental homeostasis and tissue and organ morphogenesis (43) . Similarly to the mouse survivin gene, the bcl-2 and bcl-X genes also contained TATA-less, GC-rich promoter regions, transcriptionally controlled by Sp1 sites (44 , 45) . Altogether, these findings propose a novel expanded role of Sp1-dependent transcription at the interface between the control of cell proliferation and multiple antiapoptotic pathways mediated by bcl-2 molecules (3) or via cell cycle-dependent expression of survivin in G2-M (20) .
As one of its most intriguing feature, survivin becomes prominently expressed in a variety of cancers but is undetectable in many normal adult tissues in vivo (14) . This paradigm may also hold true for mouse tissues, in which prominent expression of survivin RNA was detected in a variety of transformed cell lines of epithelial and lymphoid lineage but not in nontransformed cells.5 Rather than chromosomal abnormalities, the overexpression of survivin in cancer may reflect deregulation of Sp1-dependent transcription of the survivin gene because, as shown here, survivin promoter activity increased by >10-fold in transformed epithelial cells versus nontransformed normal mouse liver cells. In this context, the elucidation of the molecular requirements of survivin gene transcription as detailed here may provide alternative interventional strategies to block the increased expression of survivin in cancer (14) and its potential participation in disease progression (17) .
| FOOTNOTES |
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1 Supported by NIH Grants RO1 HL54131 and CA78810. This work was done during the tenure of an Established Investigatorship Award from the American Heart Association (to D. C. A.). ![]()
2 To whom requests for reprints should be addressed, at Yale University School of Medicine, Boyer Center for Molecular Medicine 436B, 295 Congress Avenue, New Haven, CT 06536. Phone: (203) 737-2869; Fax: (203) 737-2290; E-mail: dario.altieri{at}yale.edu ![]()
3 The abbreviations used are: IAP, inhibitor of apoptosis; BIR, baculovirus iap repeats; CDE, cell cycle-dependent element; CHR, cell cycle gene homology region; EST, expressed-sequence tag. ![]()
Received 12/ 7/98. Accepted 4/27/99.
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S. Fukuda and L. M. Pelus Regulation of the inhibitor-of-apoptosis family member survivin in normal cord blood and bone marrow CD34+ cells by hematopoietic growth factors: implication of survivin expression in normal hematopoiesis Blood, October 1, 2001; 98(7): 2091 - 2100. [Abstract] [Full Text] [PDF] |
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B. Z. Carter, M. Milella, D. C. Altieri, and M. Andreeff Cytokine-regulated expression of survivin in myeloid leukemia Blood, May 1, 2001; 97(9): 2784 - 2790. [Abstract] [Full Text] [PDF] |
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J Silke and D. Vaux Two kinds of BIR-containing protein - inhibitors of apoptosis, or required for mitosis J. Cell Sci., January 5, 2001; 114(10): 1821 - 1827. [Abstract] [PDF] |
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M. Kirsch-Volders and M. Fenech Inclusion of micronuclei in non-divided mononuclear lymphocytes and necrosis/apoptosis may provide a more comprehensive cytokinesis block micronucleus assay for biomonitoring purposes Mutagenesis, January 1, 2001; 16(1): 51 - 58. [Abstract] [Full Text] [PDF] |
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K. Korner, V. Jerome, T. Schmidt, and R. Muller Cell Cycle Regulation of the Murine cdc25B Promoter. ESSENTIAL ROLE FOR NUCLEAR FACTOR-Y AND A PROXIMAL REPRESSOR ELEMENT J. Biol. Chem., March 23, 2001; 276(13): 9662 - 9669. [Abstract] [Full Text] [PDF] |
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