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Advances in Brief |
Centre for Cancer Genetics, Samuel Lunenfeld Research Institute, Mount Sinai Hospital [L. M-P., R. G., H. K., A. M., C. L., B. B., S. G., M. R.], Ontario Cancer Registry, Cancer Care Ontario [D. D., E. H.], and Departments of Surgery [R. G., S. G.], Public Health Sciences [E. H.], and Laboratory Medicine and Pathobiology [B. B., M. R.], University of Toronto, Toronto, Ontario, M5G 1X5 Canada
| ABSTRACT |
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| Introduction |
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| Materials and Methods |
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MSI Testing.
For the colorectal carcinomas, MSI was tested using the Bethesda Consensus Conference reference panel of 5 markers (BAT-25, BAT-26, D2S123, D5S346, and D17S250; Ref. 20
), with conditions as described previously (21)
. Colorectal carcinomas were classified as MSI-H if two or more loci displayed MSI, or as MSS, if no loci displayed MSI. If one locus had MSI, up to five additional loci were tested (BAT-40, BAT-RII, D18S58, D18S69, and D17S787); these reevaluated tumors were then classified as MSI-H if
40% of loci displayed MSI, or as MSI-L if
30% of loci displayed MSI (20)
. For the endometrial carcinomas, MSI was tested using at least five markers from the Bethesda reference panel and the Bethesda alternative marker list (BAT-26, BAT-40, BAT RII, D2S123, D3S1611, D5S346, D17S787, D18S59, and D18S69). Definitions for MSS, MSI-L, and MSI-H were the same as for the colorectal carcinomas.
CTNNB1 Mutation Detection.
For the CTNNB1 mutation analysis, we selected cases from the ongoing population-based study, including all available MSI-H cancers, all MSI-L cancers, and a sampling of MSS cancers. In total, we studied 80 colorectal carcinomas, including 53 MSI-H cancers, 19 MSI-L cancers, and 8 MSS cancers, and 29 endometrial carcinomas, including 9 MSI-H cancers, 2 MSI-L cancers, and 18 MSS cancers. Exon 3 of CTNNB1 was amplified by PCR in five separate reactions using six primers as shown in Fig. 1A
. The primer sequences were as follows: P1, 5'-AGTCACTGGCAGCAACAGTC-3'; P2, 5' -TCTTCCTCAGGATTGCCTT-3'; P3, 5' -GATTTGATGGAGTTGGACATGG-3'; P4, 5' -TGTTCTTGAGTGAAGGACTGAG-3'; P5, 5' -TACAACTGTTTTGAAAATCCAGCGTGGAC-3'; and P6, 5' -TCGAGTCATTGCATACTGTCC-3'. Using this approach, a small product including codons 3048 (product P1-2) was amplified from all tumors for direct sequence analysis. Remaining PCR products were designed to screen for intragenic deletions beginning outside of the P1-2 primer, and including the ß-catenin regulatory region of exon 3 (codons 3245). Fragments >250 bp are not reliably amplified from paraffin tissue; therefore, overlapping fragments were chosen to increase the likelihood of detecting deletions. Because the P5-4 and P5-6 PCR products are too large for successful amplification in the absence of an intragenic deletion, DNA extracted from peripheral blood lymphocytes was included as a separate control for PCR set-up. Although this approach would be expected to identify most of the deletions reported previously in CTNNB1 (11
, 12
, 19) , it is not possible to rule out deletions in the absence of a full-length PCR product spanning P5-6. Therefore, the results may be an underestimate of the actual CTNNB1 intragenic deletion frequency. For each PCR reaction, 2 µl of DNA was combined with 1 unit of Perkin-Elmer AmpliTaq DNA polymerase in a 15-µl PCR mixture, with PCR buffer, 1.5 mM MgCl2, 0.13 mM deoxynucleotide triphosphates, and 0.4 µM of each primer. Samples were heat denatured at 94°C for 2 min, followed by 35 PCR cycles as follows: 94°C for 15 s, annealing temperature for 15 s, and 72°C for 20 s (in a DNA Engine, model PTC-200; MJ Research, Watertown, MA). The annealing temperatures were as follows: P1-2, 52°C; P3-4, 62°C; P5-4, 52°C; P3-6, 56°C; and P5-6, 46°C. To screen for intragenic deletions, PCR products (P3-4, P5-4, P3-6, and P5-6) were electrophoresed on 2% agarose gels and visualized by ethidium bromide staining. To detect nucleotide sequence alterations, the 98-bp P1-2 PCR product was electrophoresed on a 2% agarose gel, visualized by ethidium bromide staining, and excised from the gel, and DNA was purified using QIAquick Gel extraction kit (Qiagen, Mississauga, Ontario, Canada) as per the manufacturers instructions. Purified PCR products were sequenced using ThermoSequenase Radiolabeled Terminator Cycle Sequencing kit (Amersham, Cleveland, OH) as per the manufacturers instructions. Reactions were run on a 6% sequencing gel, dried onto filter paper, and exposed to Kodak Biomax film.
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2 or Fisher exact test. | Results |
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Comparison of pathological features (Table 2)
revealed that MSI-H colorectal carcinomas with CTNNB1 mutations were more likely to be T4 tumors, right-sided, and of unusual histological subtypes. None of these trends were statistically significant. Irrespective of CTNNB1 mutation status, MSI-H colorectal carcinomas were more likely to be associated with right-sided location, marked tumor-infiltrating lymphocytes, marked Crohns-like lymphoid reactions, and nonmetastatic disease (Table 2)
. Although mutations had no apparent associations with pathological features in the endometrial carcinomas, the number of cases was too small for a comprehensive analysis (data not shown).
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| Discussion |
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Endometrial carcinoma is the second most common cancer in individuals with germ-line MMR gene mutations, suggesting that the molecular pathogenesis has similarities with colorectal carcinoma. In endometrial cancers, however, we found that CTNNB1 mutations were not specific to the MMR-deficient pathway. Furthermore, the high mutation frequency raises the possibility that activation of Wnt signaling may be universally important in a subset of these neoplasms. Although previous studies have found a low frequency of loss of heterozygosity at 5q21 in endometrial carcinomas, we are not aware of any rigorous searches to identify APC mutations (25 , 26) .
CTNNB1 mutations were reported previously in only 13% of endometrial carcinomas (16) . Most of our cancers were well to moderately differentiated endometrioid carcinomas, a subtype that had a higher CTNNB1 mutation frequency (18%) and a higher frequency of ß-catenin stabilization (46%) in the previous study (16) . Most CTNNB1 mutations reported in ovarian carcinomas are also found in endometrioid carcinomas, supporting a specific morphogenetic association (17) . Our cases were also selected for early age of onset, which could be associated with differences in tumor genetic profiles. Finally, the mutation frequencies could reflect differences in carcinogenic influences between Japan and North America. For instance, intragenic deletions of CTNNB1 were the predominant mutations reported in one series of Japanese colorectal cancers (11) .
The difference in the spectrum of missense mutations between colorectal and endometrial carcinomas was unexpected. All of the colorectal carcinoma amino acid substitutions were at known phosphorylation sites (codons 41 and 45), and three of the four mutations have been reported previously (10 , 12 , 13) . Although the final substitution, T41I, has not been described in colorectal carcinoma, it was present in one endometrial cancer (16) and in carcinogen-induced rodent tumors (27 , 28) . Several mutations at codons 41 and 45 have been shown to lead to ß-catenin stabilization (9 , 10 , 13 , 16 , 17) . In contrast, only 1 of 13 substitutions in the endometrial cancers (T41S; previously unreported) occurred at either codons 41 or 45. The remaining 12 substitutions occurred at codons 32, 33, 34, and 37 and included three novel mutations (D32H, S33C, and G34R). Although codons 32 and 34 are not known to be phosphorylated, mutations at these sites are observed frequently in human and carcinogen-induced rat tumors (16, 17, 18, 19 , 28 , 29) and may affect phosphorylation by altering recognition sequences or tertiary protein structure. Furthermore, these two residues are important for ß -catenin ubiquitination and proteasome-dependent degradation (30) .
It is possible that the DNA sequence surrounding codons 41 to 45 of CTNNB1 is specifically hypermutable in the setting of MMR deficiency. The predominance of transition mutations supports this possibility and parallels the mutation profile of some MMR-deficient cell lines (31) . Although codon 45 lies within a homocopolymer tract, which is known to be hypermutable (32) , the specific sequences that predispose to transitions in the setting of MMR are not known (33) . The presence of CTNNB1 mutations at codons 41 and 45 in small MSS colorectal adenomas (34) and the differences in the mutation profile of MSI-H endometrial cancers, however, suggest that sequence susceptibility is not the only factor. The presence of two silent CTNNB1 exon 3 alterations in the endometrial carcinomas also raises the possibility of a tissue-specific hypermutability or carcinogenic influence. An alternative explanation for the MSI pathway specificity of CTNNB1 mutations in colorectal cancer is that APC mutations and CTNNB1 mutations may not be biologically equivalent in tumorigenesis. Both genes may have functions outside of Wnt signaling that are important for clonal selection, and differences in the genetic targets of neoplastic progression between MSI-H and MSS colorectal cancers and between MSI-H colorectal and endometrial cancers are well established (6 , 23 , 35 , 36) . The recent finding that CTNNB1 mutations are frequent in small MSS adenomas suggests these neoplasms are less likely to progress and supports tumorigenic differences compared with APC inactivation (34) .
Adjacent adenomas contained the same CTNNB1 mutation as the invasive carcinomas in three of five cases. Although this is generally consistent with the hypothesized role of the APC pathway as a neoplasia gatekeeper (6) , at least two of the CTNNB1 mutations occurred during neoplastic progression from adenoma to carcinoma. In the endometrial carcinomas, we also found that two of the adjacent complex hyperplasias did not contain CTNNB1 mutations, suggesting that these alterations are not necessarily gatekeeper-type events. When multiple paired tumor samples were examined, however, the uniform presence of CTNNB1 mutations in both colorectal and endometrial cancers suggests that all have occurred during the early stages of malignant transformation. This contrasts findings in prostate cancer, where focal mutations suggest a late event during the advanced progression of subclones (18) .
If activating ß-catenin mutations are associated with specific biological attributes not present in tumors with APC inactivation, differences in the pathological features of these tumors might be expected. Although there was a tendency for MSI-H colorectal carcinomas with CTNNB1 mutations to be right-sided, higher stage, and of unusual histological subtypes, the number of cancers analyzed does not allow for definitive conclusions to be made. In comparison, many of the features known to be associated with MSI-H colorectal carcinomas (37) were uniformly present in tumors with and without CTNNB1 mutations. Although no associations between CTNNB1 mutations and pathological features of endometrial carcinomas were apparent, our series was very homogeneous in terms of the spectrum of grade, stage, and histological subtypes.
In summary, our findings confirm that CTNNB1 mutations are particularly common in MSI-H colorectal carcinomas. These mutations consist almost entirely of transitions at codons 41 and 45, revealing a relatively specific molecular fingerprint compared with CTNNB1 mutation profiles in other cancers. We also found that CTNNB1 mutations are very common in endometrial carcinomas; however, there is no association with the presence or absence of underlying microsatellite instability. Additional studies will be required to determine whether functional differences between ß -catenin activation and APC inactivation may explain some of these findings.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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1 This research was supported in part by the National Cancer Institute of Canada (to E. H., B. B., S. G., and M. R.) with funds provided by the Canadian Cancer Society. R. G. is a Research Fellow of the National Cancer Institute of Canada with funds provided by the Terry Fox Run. ![]()
2 To whom requests for reprints should be addressed, at Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Room 1073A, 600 University Avenue, Toronto, Ontario, M5G 1X5 Canada. E-mail: mredston{at}mtsinai.on.ca ![]()
3 The abbreviations used are: APC, adenomatous polyposis coli; MMR, mismatch repair; MSI, microsatellite instability; MSI-L, low frequency MSI; MSI-H, high frequency MSI; CI, confidence interval. ![]()
Received 3/17/99. Accepted 5/27/99.
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