| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
Carcinogenesis |
Department of Pharmacology and Toxicology, Queens University, Kingston, Ontario, Canada K7L 3N6 [A. S. T., T. E. M.], and Laboratory of Experimental Pathology [J. F. F., R. R. M.] and Molecular Toxicology Group [T. R. D.], National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina 27709
| ABSTRACT |
|---|
|
|
|---|
A:T transitions, 11 were A:T
G:C transitions, and 5 were transversions (2 G:C
T:A, 2 T:A
A:T, and 1 A:T
C:G), whereas 1 deletion mutation was identified. The concordance between immunostaining and molecular detection of p53 alterations was 72% when laser capture microdissection was used versus 17% based on whole tumor analysis. The high mutation frequency and heterogeneous staining pattern suggest that p53 mutations occur relatively late in AFB1-induced mouse lung tumorigenesis and emphasize the value of analyzing different staining regions from paraffin-embedded mouse lung tumors. | INTRODUCTION |
|---|
|
|
|---|
The p53 tumor suppressor gene is the most frequently mutated gene in human tumors (7) and tumor-derived cell lines (8, 9, 10) and is an archetypal checkpoint regulator. It exists as a single copy on chromosome 11 of the mouse genome and on the short arm of chromosome 17 of the human genome. The p53 protein binds to DNA in a sequence-specific fashion (11) , is involved in negative control of the cell cycle (12) , and regulates transcription (13) . Most notably, p53 is responsible for arresting cell growth in G1, thus allowing the cell to repair itself (i.e., DNA repair mechanisms) or to initiate apoptosis (14) . By preventing continued cell proliferation in the face of damaged DNA, p53 limits the likelihood of mutations becoming fixed, thereby acting as a "guardian of the genome" (15) .
In geographical areas where dietary exposure to AFB1 is common, p53 mutations are found in a high percentage of human hepatocellular carcinomas and often involve G:C
T:A transversions in the third base of codon 249 (16, 17, 18, 19, 20, 21)
. A homologue of this mutation has been observed in AFB1-induced liver cancer in mice possessing a mutated p53 transgene (22)
. In contrast to the high frequency of p53 alterations in many cancers, its involvement in chemically induced mouse lung tumorigenesis has rarely been observed (23, 24, 25, 26, 27, 28, 29)
.
In this study, we examined AFB1-induced mouse lung tumors for p53 alterations using immunostaining, SSCP analysis, and direct sequencing. In addition, the novel LCM technique was used to determine the p53 genotype in regions of tumor sections with different immunostaining properties.
| MATERIALS AND METHODS |
|---|
|
|
|---|
Immunohistochemical Staining of Accumulated p53.
For immunohistochemistry, tissues were fixed in 10% neutral buffered formalin, processed routinely, and embedded in paraffin. Localization of p53 protein expression was investigated using a polyclonal antibody, CM5 (Novocastra Laboratories; distributed by Vector Laboratories, Burlingame CA). Sections were first depa- raffinized in xylene and hydrated through a series of aqueous ethanol solutions to 1x Automation Buffer (Biomeda, Foster City, CA). Endogenous peroxidase was then blocked using 3% H2O2 for 15 min. After washing in 1x Automation Buffer, sections were microwaved, cooled, and blocked with normal goat serum (5%). All antibody incubations were carried out in a humidified chamber for 30 min (excluding the primary antibody) at room temperature. The p53 primary antibody was then applied for 1 h at room temperature. Nonimmune rabbit IgG (Jackson Immunoresearch Laboratories Inc., West Grove, PA) was used as the negative control at equivalent conditions in place of the primary antibody. The bound primary antibody was visualized by streptavidin-biotin-peroxidase detection using the Biogenex Super Sensitive Animal Detection Kit (mouse and rat absorbed; Biogenex Laboratories, San Ramon, CA) according to the manufacturers instructions and using 3,3'-diaminobenzidine as the color-developing agent. Slides were counterstained with Harris Hematoxylin (Harelco, Gibbstown, NJ), dehydrated through a series of aqueous ethanol solutions to xylene, and coverslipped with Permount (Fisher Scientific, Norcross, GA).
DNA Isolation of Whole Lung Tumors and Amplification of p53 by PCR.
DNA was obtained from frozen whole lung tumors by proteinase digestion followed by phenol/chloroform/isoamyl alcohol extraction and ethanol precipitation. The evolutionary conserved exons 58 of p53 were amplified by PCR (28)
. The 20-µl reaction mixture contained 20 mM Tris-HCl (pH 8.4), 50 mM KCl, 200 µM each deoxynucleotide triphosphate (dATP, dCTP, dGTP, and dTTP), 0.4 µM each primer (Table 1)
, 1 unit of Taq polymerase (Life Technologies, Inc., Burlington, Ontario, Canada), and 100 ng of genomic DNA. After initial denaturation at 94°C for 1 min, samples were subjected to 35 cycles of amplification as follows: denaturation at 94°C for 30 s; and primer annealing and extension at 71°C for 1 min for exons 5, 7, and 8 and at 70°C for 1 min for exon 6. An additional extension step (70°C or 71°C for 5 min) was conducted at the end of the 35 cycles. Zero DNA template controls were included in each set of PCR reactions to test for intertube contamination.
|
-33P]dATP (2600 Ci/mmol; Amersham) were included. The PCR conditions were also similar; however, amplification was carried out for 20 cycles. Four µl of the
-33P-labeled PCR products were diluted with 50 µl of 0.1% SDS and 10 mM EDTA. Equal volumes of the diluted PCR products and gel loading buffer (89% formamide, 0.1% bromphenol blue, 0.1% xylene cyanol FF, and 10 mM EDTA) were mixed and heated at 95°C for 5 min. Samples were then cooled on ice before loading on a 6% nondenaturing polyacrylamide gel containing 10% glycerol. Samples were electrophoresed at 55 W for 7 h at 4°C, dried for 1 h at 80°C, and autoradiographed using Kodak Biomax MR X-ray film.
Direct DNA Sequencing of Whole Lung Tumor DNA.
Before direct DNA sequencing, whole lung tumor outer PCR products were purified with a QIAquick PCR purification kit (Amersham Life Science, Cleveland, OH) and resuspended in 50 µl of distilled water. DNA from 2.0 µl of this DNA-containing solution was sequenced with 2.0 mM of the outer reverse PCR primer and a Thermo Sequenase radiolabeled terminator cycle sequencing kit (Amersham Life Science). Samples were then electrophoresed at 55 W for approximately 2 h on an 8% polyacrylamide denaturing gel containing 7 M urea. The gel was dried and autoradiographed as described above.
LCM.
Ten paraffin-embedded tissue sections from AFB1-induced tumors that had been stained for accumulated p53 were subjected to LCM using a PXL-100 PixCell LCM System (Arcturus Engineering Inc., Mountain View, CA) as described by Bonner et al. (32)
. Areas of interest were selected by activating the Capsure LCM Transfer Film, which covers the region of tissue to be acquired, and exposing tissue sections to pulses (varying amplitude and wavelength) from a short-pulse infrared laser. The carriers of the transfer film, which are transparent caps, were then fitted onto 1.5-ml microcentrifuge tubes containing 50 µl of cell digestion buffer [0.2 mg/ml proteinase K (Sigma, St. Louis, MO)], 10 mM Tris-HCl (pH 8; Sigma), 1 mM EDTA (Sigma), and 0.05% Tween 20 (Sigma). The microcentrifuge tubes were then inverted, and the tissues were exposed to the digestion buffer overnight at 37°C. Sample-containing tubes were then incubated at 95°C for 8 min to inactivate the proteinase K. Two µl of the resulting DNA-containing mixture were used as a template source for PCR amplification (reaction conditions were as described for whole tumor DNA).
SSCP Analysis and Direct Sequencing of Microdissected DNA.
For SSCP analysis of p53 exons 58 from microdissected tumor regions, DNA was amplified using the outer PCR primers and conditions. Two µl of a 1:10 dilution of this product were then subjected to a second round of amplification similar to that for SSCP analysis of whole lung tumors, except that inner forward primers and outer reverse primers were used (Table 1)
. Nondenaturing PAGE and autoradiography were carried out as described above for whole tumor DNA.
Conditions for direct sequence analysis of microdissected DNA were similar to those described for whole lung tumor DNA, except that PCR products from the inner amplification were used as template.
| RESULTS |
|---|
|
|
|---|
|
SSCP and Direct Sequencing Analysis of AFB1-induced Whole Lung Tumor DNA.
SSCP analysis of exons 58 from whole lung tumor DNA revealed altered banding patterns suggestive of the presence of mutations in 20 of 76 (26%) tumor DNA samples, with 85% of the mutations occurring in exon 7, and 15% of the mutations occurring in exon 6 (Fig. 1
; Table 2
). It was not possible to unequivocally identify mutations by direct sequencing of exon 6 and exon 7 SSCP-positive samples because putative mutant bands were weak. This may have been due to heterogeneous p53 sequences in the DNA of the whole lung tumor samples, as suggested by heterogeneous immunostaining. Thus, DNA isolated from whole lung tumor samples could have contained mutant DNA in low amounts relative to normal DNA. Furthermore, the correlation between the immunostaining results (i.e., the presence of any positive staining) and the whole lung tumor SSCP results was low, with a concordance rate of 17%. Consequently, LCM was used to analyze tumor samples in which DNA was isolated from both p53 positive- and negative-stained regions of tumor tissue sections.
|
A:T and 11 A:T
G:C), 5 transversion mutations (2 G:C
T:A, 2 T:A
A:T, and 1 A:T
C:G), and 1 deletion mutation were identified. Interestingly, LCM samples 18 and 28 both had two mutations in exon 7, but one of the mutations (codon 222 in sample 18 and codon 229 in sample 28) was silent. LCM sample 22, which contained DNA from a negative staining region of a tumor section, had a silent mutation in codon 247 of exon 7. In addition, several microdissected samples contained mutations in two or more exons, and LCM sample 23 also contained mutations in the flanking introns. A base substitution and a base deletion in LCM sample 10 and a base substitution in LCM sample 23 were identified in the first codon of exon 6. LCM samples 23, 27, and 28 showed the presence of a strong signal for mutant alleles on the sequencing autoradiogram without visible normal bands at the same positions, whereas the remaining 14 microdissected samples showed the presence of two bands, one representing the normal allele, and the other representing the mutant allele. Reproducibility of the mutation analysis was confirmed by reamplifying and sequencing LCM samples 18 and 20 from original template. SSCP analysis of LCM sample 24 and sequencing of some exons of LCM samples 24, 28, and 29 were not performed because there was no remaining DNA template.
|
|
|
| DISCUSSION |
|---|
|
|
|---|
Homogeneous distribution of a gene mutation throughout a tumor implies that the mutation occurred before clonal expansion, whereas heterogeneous distribution implies that the mutation occurred relatively late during tumor development (36) . From the results presented, the heterogeneous staining pattern of the tissue sections suggests that p53 mutation is a relatively late event in AFB1-induced mouse lung tumors. An early mutation of the p53 gene due to direct AFBO-DNA adduct formation at specific guanine residues in the gene can be an initiating factor in carcinogenesis; however, a late mutation suggests that loss of function of the p53 protein is not directly due to AFBO action but rather to subsequent genomic instability.
Despite earlier evidence to the contrary, positive p53 immunostaining is not 100% predictable for the presence of point mutations because there are other cellular mechanisms, such as inhibition of p53 degradation, that may also increase the half-life of p53 (37) . Therefore, molecular analysis of the tumor DNA was also used to detect alterations in the gene.
The p53 gene is composed of 11 exons, the first of which is noncoding and is localized 810 kb away from exons 211. In cross-species comparison, the p53 protein shows five highly (>90%) conserved regions among amino acid residues 1319, 117142, 171181, 234258, and 270286 (38) . Four of these regions are contained within exons 58, the sequence-specific DNA binding domain, where approximately 90% of the missense mutations in p53 occur (39) . SSCP analysis of exons 58 of the p53 gene were examined because 90% of p53 mutations occur in this hot spot region (40 , 41) . Consistent with the immunostaining results, the relatively high frequency of molecular perturbations in whole lung tumor DNA (i.e., 26%) has not been observed in previous chemically induced mouse lung tumors studies (24, 25, 26, 27, 28, 29) , again suggesting a carcinogen-specific response.
A limitation of analysis of whole lung tumor DNA samples is that false negatives may be observed due to heterogeneity of the DNA sample (i.e., the amount of normal DNA may greatly exceed the amount of mutated DNA, thus limiting the ability of SSCP and direct sequencing to detect mutated DNA). Identification of the mutations in the whole lung tumors by direct sequencing was not informative, probably for this reason. The mutation spectrum of p53 in the microdissected samples was broad, with some samples containing point mutations at two different codons, and some of these being silent. Samples 23, 27, and 28, the sequences of which showed mutant alleles but not normal alleles, were apparently either homozygous or hemi zygous for the mutation with loss of the other allele. The latter scenario is quite possible because mutation of one of the p53 alleles and loss of the other allele is common (42) . The data also suggest that the increase in apparently random DNA damage may be a result of genomic instability.
Several DNA samples (i.e., LCM samples 2023) originated from the same tumor section; however, different mutations were identified in the DNA from different regions, whether positively or negatively stained. The concordance rate of 72% that we found between immunostaining and molecular analysis is similar to previous studies involving immunostaining and SSCP (43 , 44) for p53 in humans and indicates that analysis of microdissected samples can reveal mutations in p53 that are not detectable through the analysis of whole lung tumor DNA.
Analogous to the whole lung tumor molecular analysis results, not all of the microdissected DNA samples isolated from positive-staining regions had detectable mutations in exons 58. One possible explanation is that lesions outside the exons analyzed may have been present, because a small percentage of p53 mutations can occur outside exons 58 (45) . Another explanation is that the distressed tumor cell is responding through activation of biochemical pathways controlled by the p53 gene. The precise mechanism by which DNA damage and other stimuli result in p53 stabilization has not yet been elucidated but may involve the action of other tumor suppressor or oncogene products. Recently, Pomerantz et al. (46) and Zhang et al. (47) illustrated that the inhibitor of the cyclin-dependent kinase 4/6-alternate reading frame (INK4a-ARF) gene locus encodes the ARF protein, which allows the stabilization of p53 by neutralizing the murine double minute gene 2 (MDM2), an oncogene that is involved in degradation of p53. Therefore, the increase in p53 immunostaining is not always necessarily due to direct perturbation in the p53 gene itself but may be secondary to changes in the expression of other genes.
Samples containing mutations in the p53 gene but not staining positively for accumulated p53 can be attributed to silent mutations, splicing mutations, nonsense mutations, deletions, and/or missense mutations outside exons 58 that do not yield an accumulation of p53 proteins (38) . For example, LCM sample 22 contained DNA from a negative-staining region of a tumor section; however, SSCP identified a mutation in exon 7 that was later confirmed as a silent mutation in codon 247. LCM samples 7, 12, 19, and 25 were shown to have altered banding patterns, but no mutations were identified by direct sequencing. These samples may have contained mutations in the flanking introns; however, because of the limited availability of DNA template after LCM, it was not possible to determine whether this was the case. Another possibility is that the mutations came from contaminating cells from areas other than those targeted for microdissection.
The difference in the occurrence of AFB1-induced p53 mutations in our mouse lung tumor model compared to the human hepatocellular carcinoma data can be attributed to differences in carcinogenic mechanisms. Human hepatocellular carcinoma is associated not only with AFB1 exposure but also with infection with the hepatitis B virus, and these factors may act synergistically (48, 49, 50)
. Also, the likelihood of codon 246 being a hot spot location for AFB1-induced mutations in mice is small because the p53 sequence is different from that of humans. As discussed by Ghebranious et al. (51)
, the critical mutation for Arg
Ser requires a 2-base (CGA
TCA) change in mice, compared with a 1-base change (AGG
AGT) in the homologous codon 249 in humans (changes are represented by the italicized residues). Moreover, other animal models of AFB1 tumorigenesis have shown neither codon 249 mutations nor the detection of significant levels of other p53 mutations in hepatocellular carcinomas (52, 53, 54)
.
A difference between the results obtained in mouse lung tumor models and available human lung tumor data is that molecular detection of p53 mutations occurs at a higher frequency in human lung whole tumors. This may be due to the fact that the human tumors were more advanced and more aggressive when analyzed. Alternatively, p53 mutations may occur relatively early in human lung tumori-genesis, resulting in a more homogeneous distribution throughout tumors (36) .
In a previous study by Donnelly et al. (30) using the same AFB1-induced whole lung tumor DNA, specific mutations in the first exon of K-ras were found in all of the tumors, suggesting that K-ras activation is an early, critical event in AFB1-induced pulmonary carcinogenesis in AC3F1 mice. The early K-ras mutations and other genetic events in the AFB1-induced tumors may contribute to genomic instability, resulting in mutations in genes such as p53. p53 mutations were identified in both adenomas and carcinomas, indicating that these genetic alterations are present before tumors progress from adenoma to carcinoma.
Almost all of the p53 mutations were transition mutations. A high prevalence of transversion mutations has been interpreted as suggestive of the action of exogenous carcinogens, whereas a high frequency of transitions suggests endogenous mutagenic processes (55, 56, 57) . A majority of the p53 mutations were not identified at CpG dinucleo-tides, suggesting that endogenous mechanisms such as DNA polymerase infidelity rather than deamination of 5-methylcytosine may be responsible for the mutations. Furthermore, mutations did not occur predominantly at G:C bp. This clearly contrasts with our observation that the mutations found in K-ras were exclusively at G:C bp, consistent with AFBO attacking guanine residues. It also contrasts with the recent finding of Denissenko et al. (58) that AFB1 adducts occur at numerous different guanine residues in human p53.
Overall, the high frequency and variability of specific point mutations in the AFB1-induced mouse lung tumors compared to those found with other carcinogens, coupled with the relatively high frequency but heterogeneous distribution of positive immunostaining, suggest that p53 mutations are carcinogen specific but occur after direct carcinogen actions in AFB1-induced mouse lung tumorigenesis. They also demonstrate that the analysis of microdissected DNA by LCM is useful for characterizing heterogeneously distributed p53 mutations, which cannot be analyzed accurately in whole lung tumor DNA.
| ACKNOWLEDGMENTS |
|---|
| FOOTNOTES |
|---|
1 Supported by Medical Research Council of Canada Grant MT-10382. ![]()
2 To whom requests for reprints should be addressed. E-mail: masseyt{at}post queensu.ca. ![]()
3 The abbreviations used are: AFB1, aflatoxin B1; AFBO, exo-AFB1-8,9-epoxide; SSCP, single-strand conformational polymorphism analysis; LCM, laser capture microdissection. ![]()
Received 2/10/99. Accepted 5/27/99.
| REFERENCES |
|---|
|
|
|---|
A transition mutation and enhanced cell proliferation in uterine sarcomas of CBA mice treated with 1,2-dimethylhydrazine. Toxicol. Pathol., 26: 367-374, 1998.[Medline]
This article has been cited by other articles:
![]() |
H.-H. L. Hong, T.-V. T. Ton, Y. Kim, N. Wakamatsu, N. P. Clayton, P.-C. Chan, R. C. Sills, and S. A. Lahousse Genetic Alterations in K-ras and p53 Cancer Genes in Lung Neoplasms from B6C3F1 Mice Exposed to Cumene Toxicol Pathol, July 1, 2008; 36(5): 720 - 726. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Wakamatsu, T. R. devereux, H.-H. L. Hong, and R. C. Sills Overview of the Molecular Carcinogenesis of Mouse Lung Tumor Models of Human Lung Cancer Toxicol Pathol, January 1, 2007; 35(1): 75 - 80. [Abstract] [Full Text] [PDF] |
||||
![]() |
L.-R. Zhu, P. E. Thomas, G. Lu, K. R. Reuhl, G.-Y. Yang, L.-D. Wang, S.-L. Wang, C. S. Yang, X.-Y. He, and J.-Y. Hong CYP2A13 in Human Respiratory Tissues and Lung Cancers: An Immunohistochemical Study with A New Peptide-Specific Antibody Drug Metab. Dispos., October 1, 2006; 34(10): 1672 - 1676. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Lambertini, K. Surin, T.-V. T. Ton, N. Clayton, J. K. Dunnick, Y. Kim, H.-H. L. Hong, T. R. Devereux, and R. C. Sills Analysis of p53 Tumor Suppressor Gene, H-ras Protooncogene and Proliferating Cell Nuclear Antigen (PCNA) in Squamous Cell Carcinomas of HRA/Skh Mice Following Exposure to 8-Methoxypsoralen (8-MOP) and UVA Radiation (PUVA Therapy) Toxicol Pathol, February 1, 2005; 33(2): 292 - 299. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. S. Tam, T. R. Devereux, A. C. Patel, J. F. Foley, R. R. Maronpot, and T. E. Massey Perturbations of the Ink4a/Arf gene locus in aflatoxin B1-induced mouse lung tumors Carcinogenesis, January 1, 2003; 24(1): 121 - 132. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. R. Herzog, T. R. Devereux, B. Pittman, and M. You Carcinogenic Induction Directs the Selection of Allelic Losses in Mouse Lung Tumorigenesis Cancer Res., November 15, 2002; 62(22): 6424 - 6429. [Abstract] [Full Text] [PDF] |
||||
![]() |
J.-L. Luo, W.-M. Tong, J.-H. Yoon, M. Hergenhahn, R. Koomagi, Q. Yang, D. Galendo, G. P. Pfeifer, Z.-Q. Wang, and M. Hollstein UV-induced DNA Damage and Mutations in Hupki (Human p53 Knock-in) Mice Recapitulate p53 Hotspot Alterations in Sun-exposed Human Skin Cancer Res., November 1, 2001; 61(22): 8158 - 8163. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. G. de Boer Protection by Dietary Compounds against Mutation in a Transgenic Rodent J. Nutr., November 1, 2001; 131(11): 3082S - 3086. [Abstract] [Full Text] [PDF] |
||||
![]() |
S.-M. Hayashi, H.-H. L. Hong, K. Toyoda, T.-V. T. Ton, T. R. Devereux, R. R. Maronpot, J. Huff, and R. C. Sills High Frequency of Ras Mutations in Forestomach and Lung Tumors of B6C3F1 Mice Exposed to 1-Amino-2,4-dibromoanthraquinone for 2 Years Toxicol Pathol, June 1, 2001; 29(4): 422 - 429. [Abstract] [PDF] |
||||
![]() |
F. Fend and M. Raffeld Laser capture microdissection in pathology J. Clin. Pathol., September 1, 2000; 53(9): 666 - 672. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. H. Anna, R. C. Sills, J. F. Foley, P. S. Stockton, T.-V. Ton, and T. R. Devereux {beta}-Catenin Mutations and Protein Accumulation in All Hepatoblastomas Examined from B6C3F1 Mice Treated with Anthraquinone or Oxazepam Cancer Res., June 1, 2000; 60(11): 2864 - 2868. [Abstract] [Full Text] [PDF] |
||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
| Cancer Research | Clinical Cancer Research |
| Cancer Epidemiology Biomarkers & Prevention | Molecular Cancer Therapeutics |
| Molecular Cancer Research |