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Molecular Biology and Genetics |
Genetics Division [S. O., N. M., M. N., K. A., T. S., M. T., T. Y.] and Growth Factor Division [K. N.], National Cancer Center Research Institute, Chuo-ku, Tokyo 104-0045, Japan
| ABSTRACT |
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3 chain of laminin-5, lysosome-associated membrane protein-2, the H chain of apoferritin, ribosomal protein S6, proteasome subunit XAPC7, and two cDNA fragments with no homology to the GenBank database. In addition to the AsPC-1 cells, reverse transcription-PCR analysis on surgical specimens of pancreatic cancer revealed that the PTI-1 and MMP-7 genes were overexpressed in three and four cases, respectively, of five cases examined. This method offers a unique opportunity to identify a set of genes that may be modulated by K-ras activation, at least in a subset of the pancreatic cancer. The information on such genes may facilitate our understanding of the spectrum of the functional genetic changes in pancreatic cancer. | INTRODUCTION |
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Like most other cancers, pancreatic cancer does not seem to arise from a single genetic change; other than K-ras mutation, structural abnormalities have been reported for the p53 (8, 9, 10) , p16 (10) , DPC4 (11) , c-myc (12) , APC (13) , RB1 (14) , BRCA2 (15) , and akt2 (16) genes. Abnormal expression has been noted for basic fibroblast growth factor (17) , c-met (18) , and DCC (9) . However, among the constellation of genetic abnormalities that a single pancreatic cancer cell may harbor, the K-ras mutation appears to be essential for expression of the malignant phenotype, because we reported previously that the expression of antisense K-ras RNA alone effectively suppressed the in vitro and in vivo growth of pancreatic cancer cell lines with K-ras mutation and other genetic abnormalities (19 , 20) . Moreover, the K-ras mutation is considered as an early event in pancreatic carcinogenesis, because it has been found in intraductal pancreatic cancer, ductal hyperplasia, and even chronic pancreatitis (21) .
Considering the almost ubiquitous expression of the K-ras gene, the unusual dependency of pancreatic ductal carcinogenesis on K-ras activation is intriguing but may be explained by one of the following: (a) an unidentified carcinogen/mutagen is uniquely present in the pancreatic tissue and specifically causes K-ras point mutation in the duct; (b) the point mutational activation of this housekeeping gene is too toxic to most cells except a few "K-ras-mediated transformation sensitive" tissues, such as pancreatic duct or colorectal epithelium; or (c) the K-ras mutation leads to the activation of a special set of cancer-related genes only in those "K-ras sensitive" tissues. A signaling cascade downstream of the K-ras protein leading to the mitogen-activated protein kinase activation has been well elucidated. However, if this is the only outcome of the K-ras activation, the K-ras point mutation should have been found in many types of cancers, because the K-ras gene is expressed ubiquitously as a housekeeping gene.
The antisense K-ras-transduced AsPC-1 pancreatic cancer cells with a "revertant" phenotype (19 , 20) offer a unique opportunity to analyze the gene expression that is dependent on the K-ras activation. We identified 20 cDNA fragments that showed a differential expression between the parental and antisense K-ras-transduced AsPC-1 cells. All of the 11 clones up-regulated in the antisense-transduced cells were mitochondrial genes. By contrast, the remaining nine clones that were down-regulated by antisense K-ras effect included an oncogene that has not been described before in the context of pancreatic carcinogenesis, a matrix metalloproteinase gene, and two unknown genes.
| MATERIALS AND METHODS |
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Differential Display Analysis.
Total cellular RNA was extracted from parental AsPC-1 cells and from pooled single-cell clones of antisense K-ras-transduced AsPC-1 cells as described (19)
. Twenty-five µg of total RNAs were treated at 37°C for 30 min with 20 units of DNase I (TaKaRa, Kyoto, Japan) in 50 µl of 1x PCR buffer containing 2 units of RNase inhibitor (Promega). The reaction was stopped by extraction with phenol:chloroform (1:1, v/v), and the RNA was ethanol precipitated and resuspended in diethylpyrocarbonate-treated H2O. Single-stranded cDNA was synthesized from 0.5 µg of total RNA by incubation with 200 units of Superscript reverse transcriptase (Life Technologies, Inc.) at 37°C for 60 min in a 50-µl reaction volume containing 100 mM DTT, 250 µM dNTP and 10 µM one-base anchored oligo-dT primers (T11M, where M denotes G, C, or A; Ref. 25
, 26
). cDNA (0.2 µg) was amplified in a 40-µl reaction volume containing 4 mM anchored primer (T11 G, 5'-TGCCGAAGCTTTTTTTTTTTG-3'; T11 C, 5'-TGCCGAAGC-TTTTTTTTTTTC-3'; or T11 A, 5'-TGCCGAAGCTTTTTTTTTTTA-3'), 4 mM arbitrary primer (LH-A1, 5'-TGCCGAAGCTTACCAGTC-3'; LH-A2, 5'-TGCCGAAGCTTGATCGCT-3'; LH-A3, 5'-TGCCGAAGCTTGAGCCTG-3'; LH-A4, 5'-TGCCGAAGCTTCGAGATC-3'; LH-A5, 5'-TGCCGAAGCTTCGATGCA-3'; LH-A7, 5'-TGCCGAAGCTTGCGATCA-3'; or LH-A10, 5'-TGCCGAAGCTTATGCGAC-3'), 74kBq [32P]dCTP (220 TBq/mmol; Amersham), 40 pmol dNTP, and 2.5 units of AmpliTaq DNA polymerase. The cycling parameters were: 94°C for 1 min, 40°C for 3 min, 72°C for 1 min for three cycles, then 94°C for 1 min, 58°C for 1 min, and 72°C for 1 min for 35 cycles, followed by 72°C for 5 min. Samples of 3.5 µl of amplified cDNA and 2 µl of loading dye were denatured at 80°C for 10 min and electrophoresed on 6% polyacrylamide sequencing gels. After electrophoresis, the gels were transferred to Whatmann 3M paper, dried at 80°C for 2 h, and exposed to X-ray film for 35 h at room temperature. The experiment was repeated at least twice, and only the bands that showed a reproducible difference between the parental and antisense K-ras-transduced AsPC-1 cells were further analyzed by excision from the dried gel, reamplified by PCR with the same primer set, and subcloned using the TA cloning kit (Invitrogen).
cDNA Southern Blot Analysis.
The differential expression of the DD clones was confirmed by hybridization to the cDNA pools of the respective cell lines, because it was difficult to obtain a sufficient amount of RNA from the growth-retarded antisense K-ras-transduced AsPC-1 cells without risking the loss of the growth-suppressive transgene expression over an extended passage in vitro. cDNA was synthesized from 5 µg of total RNA using the cDNA Synthesis System Plus (Amersham) with some modification (27)
. After the second-strand cDNA synthesis, cDNA was blunt ended at 37°C for 15 min with 8 units of T4 DNA polymerase and ligated to 10 pmol of EcoRI-NotI-BamHI adapter (TaKaRa) at 16°C for 12 h with 350 units of T4 DNA ligase (TaKaRa) in a 20-µl reaction volume containing 10 mM ATP. cDNA was purified by the SpinBind kit (TaKaRa) and amplified by 30 cycles of 1 min at 95°C and 3 min at 72°C. For cDNA Southern blot analysis, 5 or 10 µg of the amplified cDNA were electrophoresed on 1% agarose gels and transferred to nylon membrane filters. Membranes were prehybridized at 42°C for 2 h in a hybridization buffer containing 50% formamide and then hybridized with cloned cDNA probe, labeled with 1.85 MBq of [32P]dCTP using a random hexanucleotide primer at 42°C for 12 h. Membranes were washed in 0.1x SSC/0.1% SDS for 30 min at room temperature, followed by three washes in 0.1x SSC/0.1% SDS for 15 min at 65°C and exposed to X-ray film at room temperature.
DNA Sequencing.
DNA sequencing of cloned cDNA was carried out using T7 and M13 primers, Thermo Sequenase fluorescent labeled primer cycle sequencing kit, and an A.L.F. Express DNA sequencer (Pharmacia LKB, Uppsala, Sweden). The sequences were analyzed by the FASTA program (W. R. Pearson, University of Virginia).
RT-PCR Analysis on Cell Lines.
Amplified cDNA from various sources (AsPC-1, MIAPaCa-2, PSN-1, BxPC-3, Panc-1, Hs 700T, Hs 766T, KATO III, MKN28, TMK-1, HepG2, Alexander, HUVEC, HEL, and human muscle) were synthesized as described above and subjected to PCR. The primer sequences (and expected sizes of the PCR products) were: PTI-1 (28)
, 5'-ATGGGGGTAGAGCACTG-3' and 5'-AACACCAGCAG CAACAATCAG-3' (252 bp); MMP-7 (29)
, 5'-TCTTTGGCCTACCTATAACTGG-3' and 5'-CTAGACTGCTACCATCCGTC-3' (420 bp); and
-actin (30)
, 5'-GACTACCTCATGAAGATCCT-3' and 5'-GCGGATGTCCACGTCACACT-3' (313 bp). PCR amplification for PTI-1 was performed as 30 cycles of 94°C for 45 s, 60°C for 1 min, and 72°C for 1 min. The thermal cycle profile for MMP-7 was 94°C for 1 min, 55°C for 1 min, and 72°C for 2 min. Samples were subjected to electrophoresis on 2% agarose gels and stained with ethidium bromide.
Semiquantitative RT-PCR Analysis on Surgical Specimens.
One µg of total RNA extracted from the tissues was incubated at 25°C for 10 min, 42°C for 60 min, and 70°C for 15 min with 200 units of Superscript reverse transcriptase (Life Technologies, Inc.) in a 40-µl reaction volume containing 10 mM DTT, 1 mM dNTP, 2 units of rRNasin (Promega), and 10 µM random hexadeoxynucleotide primer (TaKaRa, Kyoto, Japan). PTI-1 and MMP-7 expression was examined by semiquantitative RT-PCR based on comparison with the
-actin expression as an internal reference. The 5' ends of the sense primers were labeled with [
-32P]ATP and T4 polynucleotide kinase, and cDNA from AsPC-1 cells was amplified by PCR for 1530 cycles with each primer set as described above. The PCR products were separated on 6% polyacrylamide gels, and radioactivity levels of the bands were quantified by Bio-Imaging Analyzer (BAS 2000; Fujix, Tokyo, Japan). The range of linear amplification for both the target (PTI-1 or MMP-7) and the reference
-actin genes was determined, and the optimal number of amplification cycles for semiquantitative PCR was found to be 20. Under this condition, a semiquantitative RT-PCR was performed on surgical specimens using the unlabeled primers. For PTI-1 expression analysis, the PCR products were hybridized with the PTI-1-specific Bridge Region probe (Fig. 2A)
to further assure the specificity of the analysis. The relative increase in the band intensity was confirmed using the BAS 2000 imaging analyzer.
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| RESULTS |
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(31)
. DD17 corresponds to the 5' UTR of PTI-1, nucleotide positions 431605, and it appears that the anchored primer T11C annealed to the sequence 5'-AAAAAG-3', at positions 431436. To confirm that DD17 represents the PTI-1 oncogene and not the contaminating Mycoplasma, PTI-1-specific RT-PCR primers were used to amplify the "Bridge Region" (28)
of PTI-1, which spans the Mycoplasma-homology UTR and truncated EF-1
coding region (nucleotide positions 537788; Fig. 2A)
Expression of PTI-1 and MMP-7 in Pancreatic Cancer Cell Lines and Various Cell Lines.
In contrast to the AsPC-1 cells, the 252-bp Bridge Region fragment of the PTI-1 gene was not detected by RT-PCR in other six pancreatic cancer cell lines examined (MIAPaCa-2, Panc-1, PSN-1, BxPC-3, Hs 700T, and Hs 766T; Fig. 3A
), suggesting that PTI-1 is expressed only in a subset of the pancreatic cancers. A very small amount of multiple PCR products >252 bp were observed in MIAPaCa-2, PSN-1, and Hs 700T cells (Fig. 3A)
. Although those bands hybridized to the Bridge Region probe, their significance remains to be shown. In cells other than the pancreatic cancer cells, the PTI-1 expression was detected by RT-PCR in TMK-1 and Alexander cells derived from a gastric cancer and hepatoma, respectively, but it was not detectable in the KATO III and MKN28 (gastric cancers), HepG2 (hepatoma), HEL (erythroleukemia) cell lines, HUVEC, or in human muscle (Fig. 3A)
. In addition to AsPC-1, MMP-7 was expressed in two other pancreatic cancer cell lines, Panc-1 and BxPC-3, as well as in a gastric cancer cell line KATO III and HUVEC (Fig. 3B)
. We confirmed that BxPC-3, Hs 700T, Hs 766T, and all of the nonpancreatic cells and tissues have a wild-type K-ras gene (data not shown).
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GAT mutation in codon 12), #3 (GGT
GAT), and #4 (no mutation in codon 12, 13, or 61 of the K-ras gene). PTI-1 expression was not increased in cancerous tissues of patients #1 (GGT
CGT) and #5 (GGT
CGT) (Fig. 4A)
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| DISCUSSION |
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More recently, mitochondrion was found to be the reservoir for key components involved in apoptosis (38) , probably playing a pivotal role in coordinating cell proliferation and death. Our data suggest that alteration of the mitochondrion is one of the major elements in K-ras-induced transformation in AsPC-1 cells. It remains to be shown whether other pancreatic cancer cells with or without K-ras mutation show a similar change in mitochondrial gene expression during their carcinogenic transformation.
Among the genes that were down-regulated in the antisense K-ras-transduced AsPC-1 cells, we focused first on the PTI-1 gene, because it is an oncogene that has not been implicated in pancreatic cancer before. The antisense K-ras-induced suppression of PTI-1 gene expression was observed in three independent antisense-transduced clones, and the suppression of PTI-1 gene expression was greater in the clones AsPC-1-AS (4.4) and (4.9), which showed a higher degree of K-ras p21 protein suppression. Moreover, infection of the AsPC-1 cells with an antisense K-ras RNA expression adenovirus vector induced growth suppression and decreased expression of the PTI-1 gene as compared with the parental AsPC-1 cells.4 Thus, we conclude that the PTI-1 gene expression is indeed functionally modulated by the K-ras activation status in the AsPC-1 cells, and the clonal variation is not the reason for the decreased PTI-1 expression in the three transfected AsPC-1 clones.
PTI-1 was originally isolated as a transforming gene from human prostate carcinoma DNA (39)
. PTI-1 has a unique fusion structure consisting of the 5' UTR with a high homology to the 23S rRNA gene from Mycoplasma hyopneumoniae, juxtaposed to a sequence that encodes a truncated and mutated human EF-1
(31)
. A genomic PCR using primers to amplify the 5'-untranslated, Mycoplasma-homology region of PTI-1 demonstrated that PTI-1 is present in human brain and kidney tissues (28)
. Moreover, our PCR-Southern blot analysis showed the presence of the Bridge Region, which spans the 5' Mycoplasma region and the 3' EF-1
region of PTI-1 in genomic DNAs obtained from human pancreatic cancer cell lines and peripheral blood mononuclear cells. These genomic analyses indicate that the transforming gene PTI-1 is an authentic human gene.
In addition to prostate cancer, PTI-1 expression has been reported in breast, colon, and lung carcinoma cell lines (28 , 31) . Our study has added the PTI-1 gene to the list of the possible genes involved in pancreatic carcinogenesis. It seems that the PTI-1 gene is activated only in a subset of pancreatic cancer; three of five surgical specimens of pancreatic cancer showed increased PTI-1 gene expression, and one of the three cases had no K-ras mutation at codons 12, 13, or 61. The elevated expression of the gene should not be the result of the relative enrichment of ductal cells in the cancerous tissues, because six cell lines and two similar surgical specimens of pancreatic ductal carcinoma showed low or undetectable PTI-1 gene expression. The role of PTI-1 in the pancreatic carcinogenesis may be a modulation of the cancer phenotype, the nature of which awaits further studies.
Another apparently cancer-related gene in Table 1
was MMP-7, one of the matrix metalloproteinases implicated in cancer invasion. Recently, a study showed that mRNA expression of MMP-7 was higher in pancreatic carcinoma than in the normal pancreas (40)
, an observation congruous to our data. As in the case with PTI-1, MMP-7 expression was also observed in the cells without K-ras mutation, and some pancreatic cancer cells with K-ras mutation did not show an increased MMP-7 transcription, suggesting the presence of a molecular pathway other than the K-ras mutation to modulate the expression of these genes.
Laminin-5 is also considered to play a role in tissue invasion of cancer cells. The anchoring filament protein has been shown to be synthesized and deposited by pancreatic cancer cells in the basement membrane in an abnormal manner (41)
. In contrast to MMP-7 and laminin-5
3, the other four known genes found to be down-regulated in the antisense-transduced cells have not been described in the context of pancreatic carcinogenesis. However, available information suggests that involvement in a malignant phenotype is also conceivable for the lysosomal membrane-associated glycoproteins 1 and 2 (42, 43, 44)
, apoferritin (45)
, ribosomal protein S6 (46)
, and proteasome subunit XAPC7 (47
, 48)
.
In sum, 20 clones have been isolated from the DD gel to compare the parental and growth-suppressed, antisense K-ras-transduced pancreatic cancer cells. Eighteen clones turned out to be known genes, and two of them, those encoding MMP-7 and the laminin-5
3 chain, have been reported by others to be overexpressed in pancreatic cancers. The other 16 clones corresponded to nine distinct genes, including four mitochondrial genes. A literature survey suggests that all of them could play a role in cancers and/or cellular transformation, although no report except the present study has suggested their involvement in pancreatic cancers.
On the other hand, this analysis also revealed a heterogeneity of the pancreatic cancer cells, because K-ras-induced overexpression of the PTI-1 and MMP-7 genes was not a universal phenomenon among the pancreatic cancers; some pancreatic cancer cells and tissues with K-ras mutation did not overexpress those genes, and some with the wild type K-ras gene appeared to have increased expression. Although it is conceivable that PTI-1 and MMP-7 contribute to the expression of a certain phenotype in a subset of pancreatic cancers, they may not belong to a set of genes that are crucial and indispensable for the process of pancreatic carcinogenesis. The biological significance of those genes in the pancreatic cancer should be determined by further investigation.
The experimental strategy of antisense K-ras transduction to pancreatic cancer cells and mRNA DD has been generating more clones that await characterization, and it may enhance our understanding of the oncogenic mechanisms of K-ras activation and/or pancreatic carcinogenesis.
| FOOTNOTES |
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1 This work was supported in part by a Health Sciences Research Grant on Human Genome and Gene Therapy from the Ministry of Health and Welfare of Japan (MHW), by a grant-in-aid for the 2nd Term Comprehensive 10-Year Strategy for Cancer Control from MHW, by grants-in-aid for Cancer Research from MHW, and from the Ministry of Education, Science, Sports and Culture of Japan. ![]()
2 To whom requests for reprints should be addressed, at Genetics Division, National Cancer Center Research Institute, 5-1-1 Tsukiji, Chuo-ku, Tokyo 104-0045, Japan. ![]()
3 The abbreviations used are: HUVEC, human umbilical vein endothelial cell; dNTP, deoxynucleotide triphosphate; RT-PCR, reverse transcription-PCR; PTI-1, prostate tumor-inducing gene 1; MMP, matrix metalloproteinase; DD, differential display; UTR, untranslated region; EF, elongation factor. ![]()
Received 3/23/99. Accepted 9/ 8/99.
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