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Tumor Biology |
Departments of Pathology [L. A. K., J. D. H. v. E., E. S., G. J. F.] and Gynecology [G. G. K], Leiden University Medical Center, and Laboratory for Cytochemistry and Cytometry, Department of Molecular Cell Biology, Leiden University Medical Center, [K. S., V. B., H. T.], Leiden, The Netherlands
| ABSTRACT |
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All cell lines were cytogenetically abnormal, and exhibited numerical and structural chromosomal deviations. HPV sequences were integrated at various (segments of) chromosomes. Duplicate integration sites were seen in all multiploid cell lines, suggesting that viral integration had preceded chromosomal endoreduplication. HPV-16 was found near the t(3p14.114.3;14) breakpoint in cervical squamous cell carcinoma (CSCC)-7 and mainly in episomal form in CSCC-1. HPV-45 was integrated near 3q2629 in cervical (adeno or adenosquamous) carcinoma (CC)-8 and near 1q2123 as well as near the t(1q21;22q13) breakpoint in CC-10A and CC-10B variant lines. HPV-67 was localized near the breakpoint of t(3p2326;13q2231) in CC-11. Southern blot analysis showed that, except for CSCC-1, the physical state of HPV in the cell lines was the same as in the original tumor lesions.
This set of six cervical cancer cell lines included three lines with HPV-45, a major non-Western high-risk HPV type, the first reported HPV-67-positive cell line, and two cell lines with integrated and episomal HPV-16 DNA, respectively. The novel combined binary ratio-fluorescence in situ hybridization technique enabled us to simultaneously map chromosomal rearrangements and HPV integration sites, thereby revealing recurrent integration near translocation junctions for all of these HPV types in the cell lines from three of the five primary tumors. The detection of multiple HPV integration sites at rearranged chromosomes at such high frequency in cervical cancer-derived cells may reflect events that are relevant to the development of cervical cancer.
| INTRODUCTION |
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Infection with HPV is an early event in the multistep cervical pathogenic process. The oncogenic potential of HPV has been attributed mainly to the continued expression of the early gene products, E6 and E7 (4) . These interfere with normal cell cycle regulation through inactivation of the tumor suppressor proteins p53 and pRB, respectively (5) . Although oncogenic HPV types are required for initial transformation, HPV infection and viral oncogene expression alone are not sufficient for the completion of the malignant conversion process. This notion correlates with the facts that (a) a long latency period precedes tumor occurrence in vivo and that (b) the incidence of tumors is less frequent than the number of HPV infections (6) . In vitro models established by transfection of primary human keratinocytes with HPV-16, HPV-18, or HPV-33 have shown that cells could be immortalized by action of the E6 and E7 genes (7) . The full malignant phenotype, however, was only reached after extensive prolonged culture in vitro or by cotransfection with the ras oncogene (8 , 9) . Cytogenetic studies or loss of heterozygosity analyses in primary cervical cancers and pre-invasive lesions indicate that secondary events involving different chromosomes, e.g., chromosomes 1, 3, 4, 5, 6, 11, 15, 17, and 18 are progressively implicated in vivo (10, 11, 12) . Yet the exact nature of cervical cancer-related genes has still to be identified.
The HPV DNA genome persists as an extrachromosomal episome in premalignant cervical intraepithelial neoplastic lesions, whereas in invasive cancers and tumor cell lines, multiple copies of the viral DNA are integrated in the host genome. In contrast with most cervical tumors, which seem to contain exclusively integrated HPV sequences, a proportion of HPV-16-positive tumors contains episomal HPV DNA either alone or in coexistence with integrated HPV sequences (13 , 14) .
Thus, although differences between the different HPV types may exist, integration of HPV DNA in the host genome represents an important event in cervical carcinogenesis. Besides increasing the transcript stability and protein expression of the viral E6 and E7 genes (15) , integration may cause changes in the transcription and expression of cellular genes targeted by the integration event. The integration of HPV sequences in the host genome might occur randomly or with a preference in or near fragile sites or oncogenes (16) . Various HPV integration sites have been identified in HPV-16- or HPV-18-containing tumor-derived cell lines (16, 17, 18) , in a limited number of primary lesions (19 , 20) , or in HPV-immortalized primary keratinocytes (21, 22, 23) . Thus far, these integration sites do not point to preferential chromosome- or HPV type-specific integration. Still, HPV may integrate at presently unidentified oncogenic loci involved in cervical carcinogenesis.
In this context, we have mapped HPV DNA integration sites in six recently established cervical cancer cell lines containing HPV-16, HPV-45, and HPV-67. In addition, we have characterized the numerical and structural chromosome abnormalities in the cell lines and compared them with the original tumors with respect to the physical status of HPV and the overall DNA content. The multicolor COBRA-FISH technique (24) , which was extended with HPV hybridization5 , enabled us to map HPVs at unique chromosomal integration locations, including chromosomal translocation junctions. These sites may reflect events important in HPV-related carcinogenesis.
| MATERIALS AND METHODS |
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DNA Extraction.
Primary tumor DNA was extracted from deparaffinized tumor tissues as described previously (27)
. Tumor cell line DNA was extracted from washed cell pellets according to the standard proteinase K-SDS procedure.
HPV Detection and Typing.
General primer-mediated PCR and subsequent sequencing in combination with type-specific PCR or oligonucleotide probe-hybridization was used for the detection and typing of HPV DNA. The
-globin gene was used as an internal control for PCR amplification (28)
. An initial general primer-mediated PCR using the HPV consensus primer set (CPI/CPIIG) to amplify a 188-bp fragment in the highly conserved E1 ORF region was performed as described previously (29)
. Inconclusive or negative samples were subsequently tested with additional HPV consensus primer sets, i.e., GP5+/6+ (30)
or MY09/MY11 (29)
. To determine the HPV subtype, PCR products were subjected to direct sequence analysis. In short, after purification of the PCR products using the "EasyPrep" kit (Amersham Pharmacia Biotech, Uppsala, Sweden), the products were sequenced directly with the cycle-sequencing kit (Perkin-Elmer, Norwalk, Connecticut) using the PCR primers end-labeled with 32P-ATP. For nucleotide sequence analysis and comparisons, the programs Seqed, Fasta, and MAP of the Wisconsin Genetics Computer Group (version 8.1) sequence analysis software package were used. All available sequences of HPV subtypes were retrieved from GenBank, and they were complemented with sequences stored in a local HPV nucleotide database. HPV types were identified when nucleotide comparisons revealed an identity of >95% with a known type. Where indicated, an HPV-16-specific PCR was done or group-specific typing using a cocktail of specific oligonucleotide probes in an enzyme-immunoassay was performed, followed by type-specific hybridization (31)
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FISH Probes.
Probes for all chromosomes were obtained from Cytocell, United Kingdom. Dr. Nigel Carter (Sanger Institute, Cambridge, United Kingdom) kindly provided additional probes for chromosomes 18, 1320, 22, and X. The probe with the best performance was chosen for each chromosome. All DNA probes were amplified by degenerate oligonucleotide-primed-PCR (32)
to generate a set of 24 human chromosome painting probes for enzymatic labeling. Full-length DNA probes for HPV-16, HPV-18, and HPV-45 were kindly provided by Dr. H. Zur Hausen (Heidelberg, Germany), and full-length DNA probes for HPV-58 and HPV-67 were provided by Dr. T. Matsukura (Tokyo, Japan).
Multicolor FISH Staining (COBRA).
To visualize each separate chromosome as well as the respective HPV genome, we applied the COBRA-FISH technique as described in detail elsewhere (24)
. This method allows for staining of all 24 human chromosomes in distinguishable colors using four primary fluorophores versus using five as it was reported thus far for other multicolor FISH techniques. Thus, the fifth color (in this case, Cy7) is available for the identification of the integrated HPV. In short, each of the 24 human chromosomes were fluorescently labeled by incorporating labeled dUTP-s. This was done by using either PCR or nick translation and by using the following various combinations of four fluorophores/haptens-dUTP according to the COBRA protocol (24)
: Fluorescein (Boehringer Mannheim, Germany), Lissamine (NEN Life Science Products, Boston, MA), Cy5 (Amersham), and Digoxigenin (Roche, Basel, Switzerland). The HPV probes were labeled with Biotin-dUTP (Sigma) during nick translation. Metaphase chromosomes were prepared according to standard procedures, and they were pretreated with RNase A and pepsin according to Wiegant et al. (33)
. After denaturing, 5 ng of the biotin-labeled HPV probe and a total of 4 µg of a cocktail with each chromosome represented were hybridized for 120 h at 37°C in a humidified chamber. After washing, a mAb against digoxin followed by a sheep anti-mouse mAb conjugated to DEAC (Molecular Probes, Eugene, Oregon) was added to detect the Digoxigenin-labeled probes. The Biotin-labeled HPV probes were detected using streptavidin-Cy7 conjugates (Amersham) followed by incubations with a biotinylated mAb against streptavidin (Life Technologies, Inc.) and streptavidin-Cy7 (Amersham). Chromosomes were counterstained by DAPI solution. The slides were embedded in Vectashield (Vector) prior to microscopical evaluation. Digital fluorescence imaging and analysis were done as described (24
, 34) . Multicolor FISH karyotyping of the cell lines was simultaneously done by the same procedure (24)
.
Analysis of the Physical State of HPV DNA/Southern Blot Analysis.
The restriction enzymes used were EcoRI (Roche), HindIII (Roche), and PstI (Amersham). With each restriction enzyme, 10 µg of genomic DNA were digested, electrophoresed on 1% agarose gel, and transferred to nylon filters (Hybond N+, Amersham) by Southern blotting. Full-length HPV DNA probes were radiolabeled with 20 µCi of [
32P]dCTP using a random-primed labeling kit (Amersham Pharmacia Biotech). Southern blots were prehybridized at 65°C in hybridization mix (5x Denhardts, 6x SSC, 0.5% SDS) and after 2 h, they were hybridized with the HPV probes overnight at 67°C. Blots were washed for 30 min at 65°C in 2x SSC/0.1% SDS, for 30 min in 1x SSC/0.1% SDS, and finally for 15 min in 0.5x SSC/0.1% SDS. Membranes were exposed to Kodak X-Omat AR films with intensifying screens at -70°C.
Ploidy Analysis.
For paraffin-embedded primary tumor material, the pepsin digestion method of Hedley et al. (35)
was used for nuclear isolation from 40-µm sections. Nuclei from the cell lines were isolated using the detergent trypsin method of Vindeløv et al. (36)
. Propidium iodide was used as a DNA stain for both methods. DNA content was measured on a FACScan flow cytometer (Becton Dickinson, Mountainview, CA) and expressed as a DI (37)
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| RESULTS |
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In Vitro Characteristics of the Cervical Cancer Cell Lines.
All cell lines have now undergone >100 population doublings over at least 2050 passages in keratinocyte serum-free medium. Phase-contrast microscopy revealed flat adherent monolayers with epithelial cell morphology; cells ranged in size and shape and were arranged in a pavement-like architecture (not shown). One of the cell lines, CC-10, was split into two subpopulations (A and B) on morphological grounds at an early passage. At later passages beyond p30, the resulting variant cell lines, CC-10A and 10B, no longer showed obvious morphological differences but appeared distinct by other parameters (Tables 2
and 3
).
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HPV Typing of Primary Tumors and Cell Lines.
HPV was detected in 69 (93%) of the 74 primary tumors. The overall distribution of HPV sequences was 55.4% HPV-16 (n = 41), 20% HPV-18 (n = 15), 6.8% HPV-45 (n = 5), 4% HPV-33 (n = 3), and one each of HPV-31, HPV-35, HPV-52, HPV-56, and HPV-58 + HPV-67 (7%). Five (7%) cases remained HPV negative. In CSCC-1 and CSCC-7, HPV-16 was detected, and in CC-8 and both CC-10 variants, HPV-45 was found. Identical typing results were found in the corresponding primary tumors (Table 1)
. In CC-11, HPV-67 was detected by using all of the CPI/II, GP5+/6+, or My09/My11 primer sets. In the primary tumor, however, HPV-58 was detected with the CPI/II primer set, whereas HPV-67 was found with the GP5+/6+ and the My09/11 sets. In consecutive culture passages (p3-p27), CC-11 was consistently positive for only HPV-67 with all three primer sets. Additional HPV-58-specific hybridization performed on the primary tumor and early and late passages of CC-11 were positive on the primary tumor only. Apparently, the primary tumor contained both HPV-58 and HPV-67, and the cell line CC-11 was cultured from the HPV-67-containing tumor cells.
Chromosomal HPV-integration Sites.
To analyze the localization of HPV integration, we applied the modified multicolor COBRA-FISH technique (24)
in combination with HPV probe hybridization. Single cross-hybridizations using unique HPV-16, HPV-18, HPV-45, HPV-58, and HPV-67 probes on all studied cell lines completely matched the HPV-PCR data (not shown). The set-up for the COBRA analysis in combination with HPV hybridization is shown in Fig. 1
for cell line CSCC-7. Combined results for the other cell lines are depicted as metaphase spread images in Fig. 2
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1.1), and the integration was consistently found in one chromosome copy. In metaphase spreads of the hyperploid cell lines, on the other hand, the integration sites were seen in multiple chromosome copies, thereby indicating that the integration of HPV at these sites had preceded chromosomal endoreduplication (Fig. 2
Southern Blot Analysis.
To investigate whether the physical status of HPV in the cell lines represents the HPV status of the original tumors, we performed Southern blot analysis (Fig. 3)
. In cases where no frozen primary tumor material was available for this method, the earliest available culture passage was used. The restriction patterns in late passages of cell lines CSCC-7, CC-8, CC-10, and CC-11 (Fig. 3, B-E)
were in agreement with the presence of integrated HPV DNA as determined by HPV-FISH (Fig. 1
; Fig. 2, hk
). Moreover, the patterns were identical to those observed in the primary tumor material or early passages.
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| DISCUSSION |
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The chromosomal locations for the HPV integration described here are different from the integration sites that have been previously described in a number of cervical cancer derived cell lines, a few primary cervical cancer cell cultures, and in HPV-immortalized keratinocyte models. Although the latter are fundamentally different from tumor-derived immortal cells, they provide useful models for studying transformation in vitro. Integration of HPV-16 DNA has been found at multiple sites including chromosomes 3, 4, 7, 11, 13, 15, 17, and 20 (19 , 21 , 38) . HPV-18 integration has been reported at 3p21, 8q2122, and 12q1415 (17 , 39) and in the HeLa cell line at multiple sites including normal and rearranged 8q24 (18) , a site also implicated in HPV-16 and HPV-18 integration in two primary cervical cancers (20) . HPV-68 integration at 18q21 was recently described in a cancer cell line (40) . In HPV-33-immortalized cell lines, integration was recurrently found at chromosomes 13q3334 and 9p13 (22 , 23) . These previous reports and our present findings do not point toward the existence of a single preferential chromosomal integration site for HPV. However, recurrent integrations of different HPV types at chromosomal breakpoint regions in three of the five cervical cancers as described in this study provide novel perspectives on the role of HPV in cervical cancer. To our knowledge, HeLa is the only tumor-derived cell line in which HPV was detected at rearranged sites (18) . Over the past few years, almost 20 new cervical cancer cell lines with HPV-16, HPV-18, HPV-31, and HPV-33 have been established, but the chromosomal localization of HPV was not assessed (41 , 42) . Thus, chromosomal integration sites involving multiple HPV types in cervical cancer-derived cells are narrowly explored.
By using a novel combination of HPV detection with simultaneous multicolor-FISH analysis as applied on our tumor-derived cell lines, not only the chromosomal HPV integration sites but also the related breakpoint regions and chromosomes putatively involved in HPV-related immortalization can be identified (Table 3)
. The cytogenetically abnormal chromosomes described in this study include those that are most frequently described in primary cervical cancers, such as chromosomes 1, 3, 5, 11, and 17 (10)
. Chromosomes 3, 11, and 17, as well as other chromosomes such as 18q and 6p have also been noted in loss of heterozygosity studies (11)
. Chromosome 3 was involved in HPV integration at three different sites: 3q (HPV-45), 3p2326 (HPV-67), and 3p14 (HPV-16; Table 3
). The 3p14 region contains the FRA3B fragile site located within the FHIT gene locus, which is commonly altered in cervical carcinomas (43
, 44)
. Interestingly, this region coincides with an earlier reported HPV-16 integration site in a primary cervical cancer (45)
. To shed light on the involvement of possible fragile sites or specific cellular sequences targeted by HPV integration in the present cell lines, further fine mapping of the chromosomal abnormalities with regard to the exact chromosomal loci is in progress. Because our (and other) established cell lines from already invasive cervical cancers constitute the starting point of our analyses, we cannot provide solid evidence concerning the sequence of events, i.e., the causal relationship between HPV integration and genomic rearrangements during malignant transformation. For this purpose, HPV-immortalized keratinocytes might be suitable models for the study of sequential stages of malignancy with application of the methodology presented here.
Southern blot results indicated that the HPV integration status in all of the present cell lines, except for CSCC-1, is representative of the HPV integration status in the original primary tumors. Thus, although gross numerical changes occur in most cell lines through endoreduplication and chromosomal losses (Table 4)
, the physical HPV status is unchanged. This was also demonstrated by the multiplication of integration sites seen in the metaphase spreads (Fig. 2)
.
In CSCC-1, HPV-16 was predominantly present in episomal form. The changes in the HPV-16 restriction pattern in CSCC-1 from early to late culture passages (Fig. 3A)
suggest that the physical status of HPV sequences changed during culturing. From these data, it is not clear whether this is caused by a change in nature and/or relative contributions of episomal and/or integrated HPV DNA. Integrated HPV-16 was found at chromosome 14q in only one metaphase spread, which contained about four times as many chromosomes as the other metaphases analyzed (Fig. 2a)
. The DNA index of CSCC-1, which was measured at the same passage numbers as was used for the preparation of chromosome spreads, was in the triploid range (Table 4)
. This suggests that the octaploid cells in which integration was found probably represent a negligible subpopulation. The changed restriction pattern may, however, be explained by an aberrant physical nature of the episomal HPV-16 DNA, as has been reported in a cervical carcinoma cell line harboring a 10-kb HPV-16 genome that was maintained as an extrachromosomal episome (46)
. The presence of extrachromosomal HPV DNA has been reported in cervical cancers and a few other cervical cancer cell lines (13
, 14
, 46
, 47)
and seems restricted to HPV-16 DNA. This is in contrast with the general idea that oncogenic HPV types integrate in cervical neoplastic lesions as they acquire an invasive character. Viral integration enhances the expression of E6/E7 mRNAs, presumably by disrupting the HPV E2 gene, which encodes a transcriptional repressor of the E6/E7-specific promoter (15)
. Integration events may thus be required for the continued expression of the E6/E7 oncogenes and consequent genomic instability. The presence of high copy numbers of extrachromosomal HPV DNA, however, may lead to lower but sufficient levels of E6/E7 mRNAs in comparison with cells that contain fewer, but integrated HPV copies (47)
. It will be interesting to further investigate these aspects in CSCC-1 at consecutive passages.
Well-known HPV-16- or HPV-18-containing cell lines such as HeLa, SiHa, and CasKi (48, 49, 50) have been used in many studies world-wide and have contributed a great deal to our understanding of HPV-induced pathogenesis. Because of their establishment, a number of new cell lines, including mostly HPV-16 and HPV-18-positive cell lines, have been reported. Still, the relative difficulty to propagate tumor cells in vitro (51 , 52) has limited the representation of various HPV types and histological backgrounds. Although HPV-16 and HPV-18 are present in the majority of cervical cancers in the Western world, other HPV types may predominate in non-Western countries, where cervical cancer is even more abundant (2 , 53) . It is in this context that we point out that four of the five primary tumors from which the present cell lines were derived were from Surinamese patients, whereas only 26% of the 74 primary tumors were of Surinamese origin. Although we did not systematically assess the variables that may have contributed to the culture success of Surinamese tumors, one explanation may be the relatively large tumor size observed in these patients (3) and consequently, the increased amount of tumor material usually brought into initial culture. These patients also appear to present with non-HPV-16 or HPV-18 at a 2-fold higher frequency than the Dutch population (3) . In the present study, 14% of the Dutch primary cancers were non-HPV-16/18 versus 35% among the Surinamese cancers, which may have contributed to the establishment of four non-HPV-16/18-positive cell lines.
To date, only one HPV-45-positive cell line has been described (54) . CC-11 is the first known cell line with HPV-67. This HPV was only recently cloned from a vaginal intraepithelial neoplasia grade I and identified as a new HPV type phylogenetically clustered with HPV-16, HPV-31, HPV-33, HPV-35, HPV-52, and HPV-58 (55) .
This new set of cervical carcinoma derived cell lines, with localized integration of HPV-16, HPV-45, and HPV-67, will be useful tools for further investigations of HPV-related cervical carcinogenesis, especially to advance the identification of cellular target sequences for HPV-integration.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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1 Supported in part by Stichting VanderEs (Rotterdam, The Netherlands) and by the Eureka project Spektrakar (Senter, The Hague, The Netherlands). ![]()
2 To whom requests for reprints should be addressed, at Department of Pathology, Leiden University Medical Center, L1Q/P1-40, P. O. Box 9600, 2300 RC Leiden, The Netherlands. Phone: +31-71-5266596; Fax: +31-71-5248158; E-mail: louise_koopman{at}yahoo.com ![]()
3 These authors have contributed equally to this study. ![]()
4 The abbreviations used are: HPV, human papillomavirus; FISH, fluorescence in situ hybridization; mAb, monoclonal antibody; DEAC, diethylaminocoumarin; DAPI, 4,6-diamino-2-phenylindole; DI, DNA index; CSCC, cervical squamous cell carcinoma; CC, cervical (adeno or adenosquamous) carcinoma. ![]()
5 K. Szuhai, V. Bezrookove, J. Wiegant, J. Vrolijk, R. W. Dirks, A. K. Raap, and J. Tanke. Simultaneous molecular karyotyping and mapping of viral DNA integration sites by 25-color COBRA-FISH. Genes, Chromosomes & Cancer, in press, 1999. ![]()
Received 5/27/99. Accepted 9/ 7/99.
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