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Departments of Neuro-Oncology [T. S., H. L., X. C., D. K., Y-K. H., W. K. A. Y., P. A. S.], Neuropathology [L. A. L.], Epidemiology [M. L. B.], Biomathematics [K. R. H.], and Head and Neck Surgery [J. N. M.], The Brain Tumor Center, The University of Texas M. D. Anderson Cancer Center, Houston, Texas 77030
| ABSTRACT |
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1035%) is significantly lower than the frequency of LOH affecting the MMAC/PTEN locus in the specimens (
7595%). To further investigate the possible alterations that may affect MMAC/PTEN, we examined the expression of the gene by reverse transcription-PCR in a series of gliomas. A significant difference (P < 0.001) was observed between the expression of MMAC/PTEN in GBMs versus lower grades of gliomas, thus mimicking the difference in allelic deletion associated with the locus in these tumors. Furthermore, Kaplan-Meier survival plots, adjusted for age and tumor grade, showed a significantly better prognosis for patients whose tumors expressed high levels of MMAC/PTEN. Additionally, immunostaining of GBMs revealed little or no MMAC/PTEN expression in about two-thirds of the tumors, whereas the other approximately one-third of tumors had significantly higher levels of expression. However, in about two-thirds of the high-expressing specimens, a heterogeneous pattern of expression was observed, indicating that certain cells within the tumor failed to express MMAC/PTEN. The combination of these results suggest that, in addition to molecular alterations affecting the gene, altered expression of MMAC/PTEN may play a significant role in the progression of GBM and patient outcome. | Introduction |
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A number of studies have been directed at investigating the molecular pathogenesis of GBM (2) . The most frequent genetic alterations associated with the generation of GBM are deletions involving either large segments or an entire copy of chromosome 10, along with amplification of epidermal growth factor receptor gene on chromosome 7. Karyotypic analyses revealed that about two-thirds of patients with GBMs have lost an entire chromosome 10, whereas approximately one-third have an increase in the copy number of chromosome 7. Molecular analyses have indicated between 80 to >95% of GBMs have LOH associated with chromosome 10 (2 , 3) . However, LOH of different regions of chromosome is associated with various grades of tumor (4) . Together, these studies suggest that at least two and possibly three or more tumor suppressor genes reside on chromosome 10 and that at least one locus, MMAC/PTEN, is associated with the progression of GBMs (4) . Several candidate tumor suppressor genes have been cloned on chromosome 10q due to the identification of homozygous deletions at loci for MMAC/PTEN at 10q23.3 and DMBT1 at 10q26 (5, 6, 7) . MMAC/PTEN has been the focus of a number of studies, because it is the first tumor suppressor gene to have homology to a protein tyrosine phosphatase and actually has activity of a dual-specificity phosphatase (8) . Although, recently MMAC/PTEN has been shown to have activity against phosphatidylinositol phosphates, suggesting that MMAC/PTEN may exert its biochemical effects as a mediator of the phosphatidylinositol (PI3') kinase pathway (9) .
Meanwhile, evidence has been rapidly accumulating confirming the classification of MMAC/PTEN as a tumor suppressor gene. Expression of MMAC/PTEN in cancer cells devoid of a functional gene product has been shown to inhibit cellular growth and the tumorigenic capabilities of cells (10) . Furthermore, somatic mutations of MMAC/PTEN have been observed in a number of different cancers and cell lines including malignant melanomas, endometrial and prostate carcinomas, and brain tumors (7 , 8) . Germ-line mutations have also been found in several hereditary cancer predisposition syndromes including Cowdens syndrome, Bannayan-Zonana syndrome, and juvenile polyposis syndrome (11 , 12) . One potential caveat, however, is that although a significant number of mutations have been identified, the mutations occur in only 540% of the various tumor specimens, with allelic deletions affecting the locus. For GBMs, about 7595% of the specimens exhibit LOH at MMAC/PTEN, but only about 1030% of the samples have been shown to have mutations affecting the gene (13) . In the present study, we analyzed the expression of MMAC/PTEN using a semiquantitative RT-PCR assay and immunohistochemical analyses to determine whether altered expression of MMAC/PTEN may also contribute to the oncogenesis of GBM.
| Materials and Methods |
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RT-PCR Assay of MMAC/PTEN Expression.
mRNAs were isolated from 10 frozen sections of each tumor using the Micro-fast track isolation kit and converted to cDNA with the use of random primers and reverse transcriptase (Invitrogen, San Diego, CA). The relative quality and quantity of mRNA/cDNA were assessed by the examining the expression of enolase, and then the relative expression of MMAC/PTEN was depicted as a ratio of MMAC/PTEN to enolase. PCR primer pairs for MMAC/PTEN were designed to amplify a region from 117 to 741 bp (F1-CAGAAAGACTTGAAGGCGTAT and B1-AACGGCTGAGGGAACTC), which also contained a NsiI restriction site in the MMAC/PTEN pseudo-gene (13)
, but not in the 10q gene. The primers designed to amplify
-enolase comprised a region from 77 to 532 bp of the coding region of the gene (EF1-TGGCAGGATGACTTCAGA and EB1-AGTGGCTAGAAGTTCACC). The PCR mixture contained 100 ng of cDNA as template in 20 mM of Tris-HCl (pH 8.0), 50 mM of KCl, 1.5 mM MgCl2, 0.2 mM of each deoxynucleotide triphosphate, 1 µl of each primer, and 1 unit of Taq polymerase (Roche Molecular System, Branchburg, NJ). PCR was carried out as follows. An initial denaturation of 3 min at 94°C was followed by 40 cycles of 45 s at 94°C, 45 s at 54°C, and 1 min at 72°C, followed by 10 min of final elongation at 72°C. The PCR products were treated with NsiI and then separated on a 2% agarose gel. Images of the gel were captured by a Gel-Doc 1000 system and analyzed using Molecular Analyst software (version 2.1, Bio-Rad, Hercules, CA). Semiquantitative expression of MMAC/PTEN was determined as a ratio of MMAC/PTEN to enolase expression.
Immunohistochemical Study of MMAC/PTEN Expression.
Rabbit anti-serum was generated against a glutathione S-transferase fusion protein corresponding to amino acids 202305 of the MMAC/PTEN gene product. Frozen sections were fixed in acetone or paraffin-embedded sections were deparaffinized and then incubated in goat serum for 30 min prior to application of protein A purified IgG anti-MMAC/PTEN (1:1000), followed by incubation overnight at 4°C. The primary antibody was visualized using the Vectastain ABC Elite kit (Vector Laboratories, Burlingame, CA), followed by counterstaining with Mayers hematoxylin. Incubation of the glutathione S-transferase-MMAC/PTEN fusion protein with the antiserum resulted in an inhibition of specific binding to the protein product on immunoblots and tissue sections. Western blotting of cell extracts expressing MMAC/PTEN with the antiserum revealed only a single band of Mr
49,000.
Prognostic Data.
Prognostic data of each patient were collected from The Brain Tumor Center Database at University of Texas M. D. Anderson Cancer Center. Survival times were calculated from the date of surgery. All of the patients were basically treated with similar regimens, which included surgery followed by radiation therapy and/or chemotherapy. The correlation between MMAC/PTEN expression ratio and survival data of each patient was analyzed using GraphPad Prism 2.01 software (GraphPad Software; www.Graphpad.com) and Kaplan-Meier survival curves were generated with Cox-Mantel log-rank test. SAS software (SAS Institute, Cary, NC) was also applied to calculate Cox proportional hazards regression analysis.
| Results |
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70%), and lower grade gliomas in the rest. Four quartiles were initially created to analyze the potential association between the variables because about one-quarter to one-third of the specimens appeared to express MMAC/PTEN. Specimens from patients with high expression of MMAC/PTEN represented by a fourth quartile exhibited a significant increase in survival when compared with the other three quartiles. No significant differences in survival among patients the other three quartiles were observed. From this preliminary analysis, Kaplan-Meier survival curves were generated and revealed that patients with a low level of relative MMAC/PTEN expression assessed by RT-PCR (<0.46) had significantly shorter survival than patients with a high level (>0.46) of relative expression (hazard ratio, 3.3; 95% CI, 1.64.3; P = 0.0003; Fig. 3
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| Discussion |
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80% of the GBMs and 40% of the lower grade gliomas would be considered as having low expression. The RT-PCR and immunostaining analyses also showed that normal cells within the tumor and some tumor cells express MMAC/PTEN, and thus a considerable heterogeneity of expression levels is found. However, survival analyses showed that patients with tumors that express increased or normal levels of MMAC/PTEN have a better prognosis. Additionally, the number of tumors with low expression closely paralleled the frequency for lack of immunostaining of MMAC/PTEN seen in about 70% of the GBMs and 25% of the lower grade gliomas. Furthermore, for the
30% of GBMs specimens that exhibited strong immunostaining for MMAC/PTEN, about two-thirds of those cases had regions that failed to stain. This would suggest that the majority of GBMs (>85%) have tumor cells that do not express MMAC/PTEN, a percentage that closely parallels the observed frequency of allelic deletion affecting the MMAC/PTEN locus. The relative frequency of tumors with low expression as assessed by this analysis would agree with our recent results that demonstrated a significantly poorer prognosis for glioma patients who have allelic deletion of MMAC/PTEN (>75%) than for those with an intact locus, irrespective of tumor grade (4)
. The combination of these results imply that the alteration of MMAC/PTEN is important in glioma patient prognosis; thus, that it may be intimately involved in the generation of the malignant nature of GBMs. Similar to the results described herein, decreased expression of MMAC/PTEN was reported previously in a series of 10 prostate cancer xenografts and their several cell lines. Whang et al. (14) found only one mutation of MMAC/PTEN in 10 prostate xenografts examined; nevertheless, they observed a reduced or absent expression of MMAC/PTEN for the vast majority of tumors. Furthermore, they found that the treatment of one xenograph with 5-azodeoxycytidine restored the expression of MMAC/PTEN, suggesting that methylation of a promoter may affect MMAC/PTEN expression.
The lack of observed MMAC/PTEN expression may be accounted for by several different mechanisms. One possibility is altered methylation of the transcriptional regulatory region of the gene. This is known to occur for several tumor suppressor genes (14 , 15) , although direct evidence for this has been lacking for MMAC/PTEN. Another possibility is that the MMAC/PTEN gene may be targeted for homozygous deletion. In support of this possibility, we have shown previously that the frequency of homozygous deletion in cancer cell lines is significantly higher than in tumor specimens, suggesting that homozygous deletions may be underrecognized in some tumor specimens (13) . However, due to the large number of tumors with decreased MMAC/PTEN expression, this possibility would likely account for only a fraction of the cases. A third possibility arises from a study of Li et al. (16) , who described the identification of TEP1 (MMAC/PTEN) based on its similarity to dual specificity phosphatases. In their study, they also observed that TEP1 (MMAC/PTEN) expression was regulated in part by transforming growth factor ß. Because transforming growth factor ß and its altered signaling pathway has been implicated in a number of human cancers, the possible relationship between these two interesting pathways needs to be further examined. Yet, regardless of the mechanism(s) involved in down-regulation of MMAC/PTEN or tumor suppressor genes in general, the lack of expression appears to serve as an excellent means to achieving loss of function.
In this study, we also observed specific nuclear along with cytoplasmic localization of MMAC/PTEN in both normal and neoplastic cells of the tissue sections. Although this represents a novel observation with potentially interesting consequences, clearly more definitive studies need to be performed to confirm this result, because differences in antisera and technical procedures may affect this observation.
MMAC/PTEN is altered in a number of human cancers, including malignant melanomas, breast, prostate, and uterine carcinomas, and especially in GBMs (5 , 6 , 15 , 17, 18, 19, 20) . With the exception of endometrial carcinoma, alterations to MMAC/PTEN have been observed to primarily occur in the malignant or high-grade forms of primary brain tumors as well as in malignant melanomas, meningiomas, and prostate carcinomas (5 , 17, 18, 19, 20) . This would implicate MMAC/PTEN in tumor progression in most cancers examined. Although additional studies are clearly needed to address the potential roles of MMAC/PTEN in tumor progression, our present study also showed that patients with tumors expressing low levels of MMAC/PTEN had a significantly poorer prognosis than those with tumors expressing higher levels. This correlation was found to be significant even within the different grades of glioma. The relationship between MMAC/PTEN alterations and patient prognosis gives rise to a number of interesting possibilities worthy of further study.
| FOOTNOTES |
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1 This work was supported by NIH Grants R01 CA56041, CA51148, and P01 CA55261, State of Texas Advanced Technology Program (97-110), and a grant from the Gilland Foundation. ![]()
2 To whom requests for reprints should be addressed, at Department of Neuro-Oncology, Box 316, The Brain Tumor Center, The University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030. Phone: (713) 792-3003; Fax: (713) 745-1183; E-mail: steckpa{at}audumla.mdacc.tmc.edu ![]()
3 The abbreviations used are: GBM, glioblastoma multiforme; LOH, loss of heterozygosity; RT-PCR, reverse transcription-PCR; CI, confidence interval. ![]()
Received 12/22/98. Accepted 3/ 2/99.
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