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Dana-Farber Cancer Institute [S. B., M-S. C., D. A., Y. S., Y. W. W-K. W., J. Z., R. S., C. M-G., E. W., L. H., H. S., M. S. C., S-K. K., L. B. C.] and Beth Israel Deaconess Hospital [M. L.], Harvard Medical School, Boston, Massachusetts 02115, and Shionogi BioResearch Corporation, Lexington, Massachusetts 02421 [Y. L., X. Q., E. Y. S. C., K-M. L.]
| ABSTRACT |
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| Introduction |
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| Materials and Methods |
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100 ng of RNA from human testis and prostate specimens. This was followed by PCR (94°C, 30 s; 40°C, 1 min 40 s; 72°C, 1 min; 40 cycles) using the same primer and Taq DNA polymerase with 2 mM MgCl2 and 35S-labeled dATP. The 35S-labeled cDNA was then run on a 6% polyacrylamide gel and autoradiographed. cDNA fragments of interest were then eluted from the dried gels. The gel slice was soaked in 100 µl of distilled water for 10 min, boiled for 15 min, and spun at 14,000 rpm for 2 min. The supernatant was transferred to a fresh tube, followed by the addition of 10 µl of 3 M sodium acetate, 5 µl of glycogen (10 mg/ml), and 450 µl of 100% ethanol. The sample was then incubated at -70°C for 30 min and spun at 14,000 rpm for 10 min. The supernatant was removed, and the pellet was washed with 200 µl of 85% ethanol. The final sample was resuspended in 10 µl of distilled water.
PCR was performed on the eluted fragments using the same conditions described above. PCR products were then run on a 1.5% agarose gel and purified using the Qiaex II Agarose Gel Extraction kit (Qiagen, Chatsworth, CA).
Northern Blot Analysis.
Gel-purified hRad17 palindromic PCR fragment was converted into 32P-labeled probes for Northern analysis using a random-primed labeling kit (Boehringer). Multiple tissue Northern blots (Clonetech) were hybridized with the 32P-labeled probe as described (10)
. Filters were then exposed to X-ray film.
In Situ RNA Hybridization.
In situ RNA hybridization was performed as described previously (10)
. A 690-bp fragment corresponding to the COOH-terminus and 3' region of hRad17 was excised using PstI and cloned in pBluescript (Stratagene). Riboprobes were generated with T7 and T3 RNA polymerase.
DNA Sequencing.
Reamplified PCR products were purified from an agarose gel and subcloned into TA vectors (pCR 2.1 Invitrogen). DNA was then alkaline denatured followed by neutralization and precipitation, annealing with sequencing primers and sequencing using the Sequenase Version 2.0 kit (United States Biochemical, Cleveland, OH). Sequencing was performed on both strands of the PCR products.
cDNA and Genomic Library Screening.
The full-length clone of hRad17 was obtained by screening a human fibroblast
ZAP II cDNA (Stratagene) library using standard library screening procedures. Mouse and green monkey rad17 homologues were obtained by screening 3T3 and COS cell cDNA libraries, respectively. The hRad17 genomic clones were isolated from a human peripheral blood lymphocyte genomic library. The promoter region and a pseudogene were identified after DNA sequencing.
FISH.3
Mitotic chromosome spreads of human lymphocytes were prepared according to standard procedures. The XhoI/XbaI hRad17 cDNA probe was biotinylated using the BRL BioNick labeling kit. Slides were baked at 55°C for 1 h. After RNase treatment, the slides were denatured in 70% formamide in 2x SSC for 2 min at 70°C, followed by dehydration in ethanol. The probe was denatured at 75°C for 5 min in 50% formamide and 10% dextran sulfate. After overnight hybridization with the probe, slides were washed, labeled with DAPI, and visualized. Assignment of map position was achieved by superimposing the FISH signal with the DAPI-banded chromosomes (11)
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Generation of Antibodies and Immunohistochemical Staining.
We overexpressed full-length HRad17 as a fusion protein with GST in Escherichia coli and purified it by binding to glutathione-conjugated beads. HRad17 was released from GST-beads by treatment with thrombin, and the HRad17-GST fusion protein was eluted by excess glutathione. Mice were immunized with purified HRad17 to produce a series of monoclonal antibodies recognizing HRad17. Detailed characterization of these antibodies will be presented elsewhere.
Specimens of normal colon, colorectal carcinoma tissues, and mouse testis were fixed in 3.7% formalin and embedded in paraffin. Routine sections were cut 5 µm thick, dried at 40°C for 4 h, cleared in xylene, and rinsed in ethanol. The immunohistochemical staining was performed by an automated Ventana 320/ES immunohistochemistry robot. Endogenous peroxidase was quenched with methanol/peroxide solution and blocked with normal horse serum. Sections were incubated with a diluted anti-HRad17 monoclonal antibody for 20 min. A peroxidase-conjugated secondary antibody was applied and visualized with 3',3'-diaminobenzidine as a substrate. A negative control was run simultaneously with preimmune immunoglobulins.
| Results |
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This technique, termed palindromic PCR cDNA differential display, was used to identify and isolate cDNA fragments expressed differentially between normal and malignant colon tissues. The mRNAs isolated from normal colon and colorectal carcinoma tissues were reverse transcribed to cDNA and amplified by PCR, all using a single palindromic primer. After electrophoresis and autoradiography, cDNA patterns derived from the testis and prostate were compared and analyzed for differences. As shown in Fig. 1A
, one cDNA fragment amplified with the palindromic primer appeared to be present at significantly higher levels in colorectal carcinoma tissue as compared to normal colon (arrow). This cDNA was recovered from the gel and re-amplified by PCR with the same palindromic primer. A single band was detected (Fig. 1B)
, and the cDNA was then subcloned and sequenced. Sequence analysis revealed that the 523-bp fragment (Fig. 1C)
contained a partial ORF of 174 amino acids. A database search suggested that the PCR fragment contained a putative ATP-binding site and shared limited homology with replication factor C subunits.
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ZAPII cDNA library. Four overlapping clones were isolated and sequenced, and one contained a complete ORF. The 2010-bp ORF encodes a 670-amino acid protein with a predicted molecular mass of about 75 kDa (GenBank accession no. AF112263). It is a basic hydrophilic protein with a putative ATP-binding site and two potential nuclear localization signals, 340RPRKK346 and 358KRRKK364, suggesting that this may be a nuclear protein. The PCR fragment described above corresponds to amino acids 59233 of the ORF.
The GenBank database analysis revealed that the ORF shared significant homology at the amino acid level with rad17 of S. pombe (26% identity; 51% similarity) and RAD24 of S. cerevisiae (22% identity; 46% similarity). A comparison of the proteins is shown in Fig. 3C
. This level of similarity suggested that our novel ORF is likely to be a human homologue of these yeast proteins. Thus, we designated it as Hrad17. Since our finding, another group specifically looking for the human homologue of S. pombe rad17 has independently identified the same gene as Hrad17 (13)
. Although they reported 49% identity to S. pombe rad17 at both the DNA and amino acid levels, we were unable to reproduce such a high degree of homology in our analyses. The sequence homology between hRad17 and S. pombe rad17 appears to be higher than that between the two yeast homologues. All three proteins are basic hydrophilic proteins with a similar size. We have also cloned the mouse and African green monkey (GenBank accession no. AF106067) homologues of the hRad17 gene. Both are very similar to the human sequences (Fig. 3A)
. In addition, in the course of genomic cloning and sequencing of hRad17, we have identified the promoter region (GenBank accession no. AF106065) and a pseudogene located at 7p21 (GenBank accession no. AF106066) for hRad17.
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Expression of HRad17 Protein in Colon, Colorectal Carcinoma, and Testis.
Full-length HRad17 was expressed as a fusion protein with GST and purified. Mice were immunized with the highly purified HRad17, and monoclonal antibodies were generated. These monoclonal antibodies recognize HRad17 protein by Western blot analysis as well as HRad17 produced by in vitro transcription-translation driven by HRad17 full-length cDNA. Characterization of these monoclonal antibodies will be presented elsewhere. Immunohistochemistry was performed on paraffin sections of colorectal carcinoma tissues (Fig. 4A)
. Again, high expression of HRad17 was detected in sections from colorectal carcinoma cells biopsies (Fig. 4A
, left side of panel) when compared with normal cells (Fig. 4 A
, right side of panel), with staining being observed mainly in the nucleus. HRad17 staining detected here was completely abolished when anti-HRad17 monoclonal antibodies were first incubated with excess of highly purified HRad17 (data not shown).
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| Discussion |
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We identified the same protein by a different approach. Using the palindromic PCR-cDNA differential display method, we compared the mRNA expressions between normal and cancerous human colon. One of the genes we found to be expressed at much higher levels in colon carcinoma was hRad17. The basis for increased expression remains to be elucidated. We have cloned
2.0 kb of the hRad17 promoter region (GenBank accession no. AF106065) and found putative responsive elements for known oncogenic transcription factors such as c-myb and TCF-1 that are highly expressed in colon carcinoma tissues and thought to contribute to the etiology of this disease (14
, 15)
. Whether these factors are involved in the overexpression of hRrad17 in colorectal cancer remains to be determined.
Although a functional role for HRad17 has not yet been established, its homology to yeast checkpoint proteins suggests it may play a part in cell cycle control. HRad17 is also abundantly expressed in the testis. The role of the testis is to produce billions of sperm cells continually. An organ with such a high rate of cell division would be expected to require high levels of proteins involved in cell cycle control. In addition, it is the only organ in adults where cells undergoing meiosis can be found. The HRad17 protein shows a striking pattern of localization within the cells of the seminiferous tubule. It is found throughout the early stages of spermatogenesis, including cells undergoing both meiotic and mitotic divisions. The only cells that lack HRad17 are the terminally differentiated spermatozoa, cells that do not divide any further. Interestingly, RAD24, the budding yeast homologue of HRad17, plays a critical role in a meiotic checkpoint as well. RAD24, in combination with RAD17 and MEC1, prevents the first meiotic division until meiotic recombination is complete (5) . ATM and ATR (5) , human proteins similar to MEC1, have been shown to localize to synaptonemal complexes in meiotic cells. They are also abundantly expressed in testis (16) . There is ample evidence that human homologues of yeast proteins form similar complexes and function in similar pathways to those of the yeast proteins (3 , 8) . Thus, HRad17 may interact with ATM and/or ATR as part of a human pathway analogous to the RAD24/RAD17/MEC1 in budding yeast.
The consequences of overexpression of HRad17 by human colon carcinoma are unknown. However, it may confer increased resistance of colon cancer cells to DNA-damaging agents including radiation and alkylating drugs. It has been proposed that in yeast, rad17 and RAD24 play a role in the DNA-damage checkpoint (17)
. Arrest of the cell cycle in G2 phase after DNA damage is believed to promote cell viability by allowing time for DNA repair before entry into mitosis. Agents that abrogate G2 arrest or mutations in genes that regulate the G2 checkpoint tend to sensitize cells to DNA-damaging agents (18
, 19)
. If the human homologue of S. pombe rad17 acts in a similar fashion, targeting overexpressed HRad17 might render colon cancer cells more sensitive to DNA-damaging agents. It has been shown that UCN-01, a potent abrogator of the G2 checkpoint, does sensitize HT-29 colon carcinoma cells to
-rays (20)
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The hRad17 gene is located on chromosome 5q1213.1. This is in agreement with the localization of hRad17 determined by another group.5 Although no human disease has been associated with deletion of this specific chromosomal location, thousands of cases of human cancers are reported to have deletions spanning this region. Contrary to colon cancer where overexpression may be responsible for resistance to DNA-damaging agents, lack of HRad17 may contribute to the genesis of other types of both sporadic and hereditary human cancers. Because rad17 and RAD24 are essential for post-DNA damage checkpoints in yeast, HRad17 may also play a similar role in humans. If so, a loss of HRad17 could compromise checkpoint pathways responsible for the appropriate response to damaged DNA. This could result in damaged DNA going unchecked and unrepaired. Malfunctions in these pathways could constitute a critical turning point in the genesis of cancer; loss or mutation of a checkpoint gene would generate still more mutations, leading to the most intriguing aspect of human cancers, genomic instability.
| FOOTNOTES |
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2 To whom requests for reprints should be addressed, at Department of Pathology, Dana-Farber Cancer Institute, 44 Binney Street, Boston, MA 02115. Phone: (617) 632-3386; Fax: (617) 632-4470; E-mail: drchen{at}shore.net ![]()
3 The abbreviations used are: FISH, fluorescence in situ hybridization; DAPI, 4',6-diamidino-2-phenylindole; GST, glutathione S-transferase; ORF, open reading frame. ![]()
4 A. Lin and L. B. Chen, manuscript in preparation. ![]()
5 F. Dean, Rockefeller University, personal communication. ![]()
Received 12/17/98. Accepted 3/17/99.
| REFERENCES |
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