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Advances in Brief |
Laboratory of Cancer Genetics, Institute of Medical Technology, University of Tampere and Tampere University Hospital, FIN-33101 Tampere, Finland [P. K., M. T., J. I.]; Department of Oncology, University Hospital, SE-22185 Lund, Sweden [I. H., K. P., M. T., O. J., H. O., J. I., A. B.]; Cancer Genetics Branch, National Human Genome Research Institute, NIH, Bethesda, Maryland 20892 [I. H., D. J. D., J. M. T.]
| ABSTRACT |
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| Introduction |
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| Materials and Methods |
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Probes for FISH.
PAC probes for MYB, MYBL1 (A-MYB),
MYBL2 (B-MYB), and the ER
gene were obtained
by screening a PAC library by PCR using primers specific for each gene.
The specificity of the probes was confirmed by FISH to normal metaphase
chromosomes, which showed the presumed chromosomal localization for
each probe. The probes were labeled with digoxigenin by standard nick
translation. A spectrum green-labeled pericentromeric probe (Vysis,
Inc., Downers Grove, IL) was used as a reference probe to determine the
copy number of chromosomes 6, 8, and 20 for MYB,
MYBL1, and MYBL2, respectively.
FISH.
Touch imprint preparations were made for FISH analysis by lightly
pressing a semi-thawed frozen tumor onto Superfrost Plus
microscope slides (Menzel, Braunschweig, Germany) microscope
slides and air-dried. Prior to hybridization, imprint preparations were
fixed with 50, 70, and 100% Carnoys solution [methanol:acetic acid
(3:1)] for 10 min each. Dual-color FISH experiments were performed as
described previously (5)
. MYB,
MYBL1, MYBL2, and ER probes were
hybridized together with chromosome 6 centromere probe. The
hybridization was carried out overnight at 42°C in a mixture
containing 5 ng of pericentromeric probes, 20 ng of gene-specific
probes, and 10 µg of human placental DNA. After hybridization, excess
probes were washed with 0.4x SSC (2 min at 74°C) and 2x SSC (1 min
at room temperature), and detected immunohistochemically with
antidigoxigenin rhodamine. Slides were counterstained with 0.2
mM 4,6-diamidino-2-phenylindole in an antifade
solution (Vectashield; Vector Laboratories, Burlingame, CA).
Hybridization signals were evaluated using an Olympus BX50
epifluorescence microscope equipped with a x63 oil-immersion objective
(numeric aperture, 1.4). A dual band-pass fluorescence filter
(Chromotechnology; Brattleboro, VT) was used to visualize the FITC and
rhodamine signals simultaneously.
At least 80 nonoverlapping nuclei with intact morphology based on
4,6-diamidino-2-phenylindole counterstaining were scored to determine
the number of hybridization signals for MYB and centromere
probes. Control hybridizations to normal lymphocytes were done to
ascertain that the probes recognized a single copy target and that the
hybridization efficiencies were sufficient. Both absolute copy numbers
and the copy number ratio (between average of MYB,
MYBL1, and MYBL2 and the respective
centromere copy numbers) were determined. Amplification of MYBgene was defined as a copy number ratio of
2.0, whereas a copy
number gain was assigned to tumors having a ratio >1.5 and
<2.0.
CGH.
CGH was performed according to a published protocol (6)
.
Briefly, tumor DNA and normal female reference DNA was extracted using
a standard protocol and labeled with FITC-dCTP and Texas-Red-dUTP
(DuPont, Boston, MA), respectively, using standard nick translation.
Labeled DNAs (400800 ng of each) and 10 µg of unlabeled Cot-1 DNA
(Life Technologies, Gaithersburg, MD) were hybridized onto
commercially available normal metaphase chromosomes (Vysis). The
hybridizations were evaluated by a commercial digital image analysis
system (Vysis).
Northern Blot.
Total RNA was extracted from the tumors with the RNeasy kit (Qiagen),
followed by TRIzol (Life Technologies). Ten µg of RNA from each tumor
was size-fractionated on a 1% agarose gel containing formaldehyde.
After capillary transfer to Hybond-N membranes, the RNA was hybridized
with a 32P-labeled MYB probe.
Following hybridization overnight at 42°C, the membranes were washed
twice in 2x SSC containing 0.1% SDS at 42°C and twice in 0.1x SSC
containing 0.5% SDS at 65°C before exposure to autoradiographic film
at -70°C.
cDNA Microarray Preparation, Hybridization, and Analysis.
Microarrays were prepared by PCR amplification and arrayed on
poly-L-lysine-coated glass slides using a custom,
high-speed robotic printer as described previously (7)
.
Total RNA was extracted from the biopsy specimen and the reference
MCF-10A cells using RNeasy (Qiagen) and TRIzol in succession
according to the manufacturers recommendations. Fluorescent-labeled
cDNA targets were prepared by a single round of reverse transcription
in the presence of Cye3- or Cye5-dUTP (Amersham) and hybridized to the
probes as described previously (8)
. Fluorescence
intensities were measured using a custom-designed scanning laser
confocal microscope with appropriate excitation and emission filters,
and a photomultiplier tube. ArraySuite software (9)
was
then used to identify probe sites, extract fluorescence intensities,
and merge the two images. Color images were formed by arbitrarily
assigning the red (Cye3) and green (Cye5) channels. Local background
was calculated for each probe location. The ratios for all of the
probes and confidence intervals for each experiment were determined
with the aid of 88 "housekeeping" genes whose theoretical
expression ratios are expected not to deviate significantly from 1.0
(7
, 9)
.
Immunohistochemistry.
A tumor xenograft from tumor 13996 was grown in nude mice as
described
elsewhere.5
Freshly prepared xenograft tissue was fixed overnight in 4% buffered
formalin and processed to a paraffin block according to a standard
procedure. Sections (34 µm) were cut onto
poly-L-lysine-coated slides. Prior to immunostaining,
antigen retrieval was performed by immersing the dewaxed sections in 10
mM EDTA (pH 8.0) at 94°C for 20 min in a
temperature-controlled microwave oven. A standard
avidin-biotin-peroxidase technique was used for visualization with
diaminobenzidine as a chromogen (Histostain Plus-kit; Zymed
Laboratories, San Francisco, CA). A polyclonal antibody to c-Myb was
obtained from Santa Cruz Technologies and was used in a 1:500 dilution.
| Results |
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T)
carrier showed a high-level copy number gain at 6q22-q24 (Fig. 1A)
gene, located at 6q25 (FISH data not shown).
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cDNA Microarrays.
The microarrays consisted of 4688 cDNA clones selected from the UniGene
collection. The clones included 2629 homologous to known genes and 2059
clones with no known homology. Analysis of the BRCA1 tumor
13996 (with a high level of MYB amplification, 11.2-fold;
Table 1
) showed MYB (v-myb avian myeloblastosis
viral oncogene homologue) expression to be greatly increased as well
(15-fold; Table 2
), relative to the MYB expression in the reference MCF-10A
cells. Furthermore, several putative MYB- or cell
cycle-regulated genes [i.e., cdc2, cyclin B1,
aurora, and retinoblastoma-like 1 (p107) protein] were determined to
be overexpressed as well (Table 2)
. Other putative candidate genes
localized to the 6q22-q24 region, including MAP/ERK kinase 5,
interferon-
receptor
, phosphodiesterase I/nucleotide
pyrophosphatase 1, gap junction protein
1, myristylated alanine-rich
protein kinase C substrate (MARCKS, 80K-L), connective tissue growth
factor, and several anonymous ESTs, were not found to be overexpressed.
However, a gene designated pleomorphic adenoma gene-like 1 and mapped
to 6q24-q25, was found to be 8-fold overexpressed in tumor 13996. A
complete list of clones and hybridization results from tumor 13996 is
available on request, and can also be found at the National Human
Genome Research Institute Web
site.6
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| Discussion |
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The MYB gene was found to be overexpressed in amplified
tumors using Northern blot and cDNA microarray analysis, and c-Myb
protein overexpression was detected by immunohistochemistry. The
amplicon did not extend to the 6q25 region as evidenced by a normal
copy number of the ER
gene in these tumors. Other 6q23 candidate
genes and ESTs present in the array were not found to be overexpressed.
We cannot rule out the importance of other target genes in the 6q23
region, including IGFBP4, a DNA-binding protein; A20, an elongation
factor homologue; and additional ESTs not present on the microarray.
However, the fact that MYB appeared as one of the most
highly overexpressed genes among the
5000 clones analyzed supports
the assumption that 6q23 amplification in BRCA1 tumors is
driven by this oncogene.
The Myb proteins are ancient regulators of gene expression, consisting of three discrete functional domains responsible for sequence-specific DNA binding, transcriptional activation, and negative regulation of the protein, and they function as key regulators of cell growth and differentiation (14) . The MYB oncogene was first discovered in avian retroviruses that cause acute leukemia; it encodes v-Myb proteins that are truncated and deregulated versions of the cellular c-Myb protein. The normal c-Myb protein is highly expressed in immature hematopoietic cells, and its expression decreases dramatically during cell differentiation (15) . B-Myb, one of two closely related MYB genes present in vertebrates, is a ubiquitously expressed key regulator of cell cycle progression, and ectopic expression of B-Myb protein was shown to override p53-induced G1 arrest, allowing cell cycle progression under circumstances when DNA repair or apoptosis normally would prevail (16) . Like B-Myb, A-Myb is also regulated by cyclin-dependent phosphorylation during the G1-S and S-phases, but (similar to c-Myb) it exhibits a more restricted tissue pattern of expression (14) . It was recently shown that mice homozygous for an A-MYB germ-line mutation develop to term but show defects in growth of certain tissues (17) . Male A-MYB- -/- - mice were infertile because of a block in spermatogenesis and the pachytene phase of meiosis, whereas females manifested poor mammary gland morphogenesis, mainly during pregnancy, and progesterone-induced ductal branching and alveolar outgrowth (17) . A similar lack of pregnancy-induced breast epithelial cell proliferation, duct branching, and alveoli development was observed in mice with conditional BRCA1 knockout in mammary tissue (18) . Thus, both BRCA and MYB proteins are crucially involved in the processes of DNA recombination and mammary gland development (2 , 17 , 18) .
The single MYB homologue present in Drosophila (Dm myb) and in Schizosaccharomyces pombe (cdc5) has been implicated as having a role in G2 progression and G2-M transition (19 , 20) . It was found that wing cells in Dm myb mutants enter and complete DNA synthesis but are blocked in G2 or at G2-M transition where they continue to replicate their DNA, resulting in polyploidy. This suggests that Dm myb possesses two cell cycle checkpoint functions, one in regulation of the G2-M transition and a second in prevention of endoreplication and maintenance of diploidy (19) . In all likelihood, Dm myb represents the progenitor of all three MYB genes evolved in vertebrates and encompasses their combined functions. Thus, in addition to tissue-specific expression, the different vertebrate MYB genes may possess both distinct and overlapping functions in cell cycle G1-S progression and G2-M control, as well as in cell differentiation. A potential role of BRCA1 in a G2-M checkpoint has also emerged (2) , and its seems reasonable to suspect an interplay between MYB and BRCA protein functions.
Homozygous disruption of the MYB gene in mice is lethal and causes death from severe anemia at day 15 of embryogenesis, which demonstrates the critical role of c-Myb during hematopoiesis and erythroid cell differentiation (21) . However, c-Myb expression has also been noted in nonhematopoietic cells, including normal and tumorigenic human breast epithelial cells and breast tumors (22 , 23) . Surprisingly, c-Myb expression in breast cells was found to be associated with estrogen stimulation and the presence of ER, possibly because of a posttranscriptional stabilization of the MYB transcript. Results from the present study support a relationship between c-Myb expression and ER-positive phenotype. ER-positive sporadic and BRCA2 tumors without MYB amplification displayed moderate c-Myb expression in Northern blot analysis, whereas ER-negative sporadic tumors exhibited low or no c-Myb expression. Thus, c-Myb may, like A-Myb, play a role in hormone-regulated growth and differentiation of breast epithelial cells and ER-positive breast cancer. However, because BRCA1 tumors usually are ER-negative (24) , the activity of MYB (single or amplified copy number) in BRCA1-deficient cells would be regulated by other pathways. Possibly, MYB amplification in BRCA1 tumors may reflect a compensatory mechanism to execute vital cellular functions or to override a cell cycle block caused by DNA damage. Providing further suggestive evidence for a link between MYB and BRCA1 regulation, several potential MYB binding sites (PyAACG/TG) are found in the BRCA1 promotor region.7
cDNA microarray analysis of BRCA1 tumor 13996 with
high-level MYB amplification disclosed high expression of a
multitude of cell cycle regulators, some of which have been suggested
previously as being activated by MYB, including cdc2/cdc28,
topoisomerase II
, cyclin B1, p53, MSH2, mitotic feedback
control protein MAD2-like 1, aurora/IPL-1-related kinase, and
retinoblastoma protein homologue p107 (14)
. This
deregulated gene expression may be a consequence of other cellular
processes and should not be taken as evidence for a
MYB-related activity. For example, tumor 13996 carries a
somatic p53 mutation (Ser215Ile; data not shown). However, it provides
a possible link between a transcription factor and its target genes and
demonstrates the usefulness of microarray analysis in depicting
cellular signaling pathways.
In conclusion, amplification of the MYB gene at 6q22-q24 was unexpectedly found to be a prevalent genetic aberration in BRCA1-associated breast tumors. This is an infrequent finding in sporadic breast cancer, and indeed, both sporadic and hereditary breast cancer usually are characterized by deletions on chromosome 6q (1 , 25) . Other oncogenes such as the ERBB2 oncogene, commonly found amplified in (ER-negative) breast cancer, are not associated with BRCA1 tumor development (24) . This illustrates that gene amplification is not merely a result of genomic instability and suggests a functional role of the c-Myb transcription factor in BRCA1 breast tumor progression. However, MYB is not essential for progression of BRCA1-related breast tumors because the majority of tumors examined lacked MYB amplification or overexpression. Moreover, we cannot rule out the existence of another target gene in the 6q22-q24 amplicon.
| FOOTNOTES |
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1 The present study was supported by grants from
the Swedish Cancer Society, the Nordic Cancer Union, Mrs. Berta
Kamprads Foundation, the Gunnar Arvid & Elisabeth Nilsson Foundation,
the Crafoord Foundation, the Hospital of Lund Foundations, the F & M
Bergqvist Foundation, the King Gustav V:s Jubilee Foundation, the
Finnish Cultural Foundation, the Maud Kuistila Foundation, the Sigrid
Juselius Foundation, and the Finnish Cancer Society. ![]()
2 Contributed equally to this work. ![]()
3 To whom requests for reprints should be
addressed, at Department of Oncology, University Hospital, SE-22185
Lund, Sweden. Phone: 46 46 177569; Fax: 46 46 147327; E-mail: ake.borg{at}onk.lu.se ![]()
4 The abbreviations used are: CGH, comparative
genomic hybridization; ER, estrogen receptor; FISH, fluorescence
in situ hybridization; PAC, P1 artificial
chromosome; PgR, progesterone receptor; EST, expressed sequence
tag. ![]()
5 Johannsson et al.,
manuscript in preparation. ![]()
6 http://wwwdev.nhgri.nih.gov/MYB/. ![]()
7 http://www2.ncbi.nlm.nih.gov/genbank. ![]()
Received 2/17/00. Accepted 8/17/00.
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