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Molecular Biology and Genetics |
Departments of Molecular Biology and Genetics [V. A. R.], Otolaryngology-Head and Neck Surgery [V. A. R., O. C., M. R. B., W. H. W., L. W., J. J., D. S.], Pathology [W. H. W.], and Oncology [J. J., D. S.], The Johns Hopkins University School of Medicine, Baltimore, Maryland 21205-2195; Department of Molecular Pharmacology, Stanford School of Medicine, Palo Alto, California 94305 [J. M. W.]; and Centre for Molecular Medicine and Therapeutics, University of British Columbia, Vancouver, British Columbia, V5Z 4H4 Canada [P. H.]
| ABSTRACT |
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| INTRODUCTION |
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In contrast to these reports, others have demonstrated genomic high-copy amplification of the 7q2231 genomic region as an important event in the progression of prostate, gastric, germ cell, glioblastoma, and HNSCCs (17, 18, 19, 20, 21, 22, 23, 24, 25, 26) . The latter results would suggest the presence of an oncogene in this cytogenetic region.
Dysregulation of pathways related to cell cycle regulation and differentiation is a critical component of oncogenic transformation and progression (27, 28, 29) . Identifying the important molecular components of processes such as chromosome segregation and DNA replication have yielded candidate genes subsequently proven to be mutated in cancer (30) . Furthermore, many of these fundamental cellular processes, as well as their components, have often been found to be conserved throughout evolution (31) . This conservation of function supports the study of candidate genes in lower organisms for the eventual identification of genes important in human cancer (32) .
ZUO1 is such a gene in Saccharomyces
cerevisiae.
It encodes a protein originally isolated as a specific Z-DNA binding
protein in vitro (33)
. Recent work has
suggested that this gene may function as a ribosome-associated
chaperone (34)
. Phenotypic analysis of a null allele of
ZUO1 in yeast suggested a mitogenic role for ZUO1
(33
, 34)
. ZUO1 also has a mouse homologue,
MIDA1, which was identified as a protein that binds to the
helix-loop-helix repressive factor Id-1 (35)
.
Intriguingly, Id-1 was shown to be important in the negative regulation
of differentiation, as well as the regulation of T antigen-dependent
transformation of senescent cells (36)
. Most recently,
constitutive expression of Id-1 in mammary epithelium was shown to
inhibit differentiation and drive invasion of the basement membrane
(37)
. Moreover, expression of Id-1 in adult mouse
intestinal epithelium induced the development of adenomas
(38)
. Finally, as in yeast, phenotypic characterization of
an antisense knockout in MEL cells revealed that MIDA1 acts
as a mitogenic factor (35)
.
We found that a novel human gene, MPP11, encoding a phosphoantigen recognized by the monoclonal MPM2, is the human orthologue of ZUO1 and MIDA1 (39) . The MPM2 antibody has been shown to recognize phosphoepitopes in centrosomes, kinetochores, spindle fibers, the chromosomal axis, and the midbody in an M-phase restricted manner, thus highlighting molecules with important functions in the mitotic phase of the cell cycle (40 , 41) .
In addition, we show that MPP11 maps to the critical region of 7q2231.1 and is expressed in most tissues. To further characterize MPP11 as a candidate gene involved in human cancer, we performed microsatellite analysis of the critical region in paired primary HNSCC and normal DNA. AI was identified in 38% of the cases examined. Analysis of Mpp11p expression revealed high protein levels in most primary tumors and HNSCC cell lines examined. Furthermore, FISH analysis done on HNSCC lines revealed an increased copy number of the MPP11 locus in two-thirds of the lines examined. These studies support the notion that MPP11 may play an oncogenic role in HNSCC.
| MATERIALS AND METHODS |
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Mapping.
The partial MPP11 cDNA clone hbc408 (gb T11010) was mapped
via the XREFdb project
(32)
.6
The map location was further refined by using a YAC contig of human
chromosome 7 (42)
. DNA was prepared from each YAC
containing strain using standard techniques for DNA purification from
yeast. Primers (5'-AACAGAAGAACAGAAGCT-3' and 5'-TGCACACACAACAAAGAT-3')
were used in standard PCR reactions using the purified DNAs to screen
for a 523-bp fragment specific for MPP11. Positive YACs were
verified by Southern blot analysis using the insert of clone hbc408 as
a probe.
Intron-Exon Boundary Identification.
A human BAC clone containing the genomic MPP11 locus (gb
AC004668) was identified by using the MPP11 cDNA (gb X98260)
as a query in the BLAST algorithm against the nonredundant DNA
database.4
Direct comparison of the
MPP11 cDNA sequence against the genomic sequence identified
the exons. The exon-intron boundaries were defined by examination of
the genomic sequence for consensus splicing signal sequences.
DNA Extraction.
Forty-five primary HNSCCs were collected after surgical resection with
prior consent from Johns Hopkins Hospital patients. Specimens were
fresh frozen and microdissected on a cryostat so that tumor samples
contained >70% neoplastic cells. DNA from tumor sections was digested
with SDS/proteinase K, extracted with phenol-chloroform, and ethanol
precipitated as described previously (43
, 44)
. Normal
control DNA was obtained from peripheral lymphocytes and processed in
the same manner as the primary tumor samples.
Microsatellite Analysis.
DNA from tumor and normal control was examined for LOH/AI by PCR-based
microsatellite analysis. Markers D7S518, D7S2446, and
D7S3080 were chosen to map alterations centromeric to
MPP11, whereas markers D7S501, D7S496, D7S523,
and D7S486 were chosen to map alterations telomeric to
MPP11. PCR conditions and criteria for AI and homozygous
deletion were described previously (45)
.
Sequence Analysis.
Tumors displaying AI were analyzed for mutations by direct
sequencing. All 17 exons corresponding to MPP11-L were
amplified and sequenced as described previously (46
, 47)
.
The PCR products were sequenced using the
[
-33P]ATP 5' end-labeled sequencing primer
and the AmpliCycle sequencing kit (Perkin Elmer, Roche Molecular
Systems, Inc., Branchburg, NJ).
Immunohistochemistry.
Paraffin-embedded blocks from 10 of the 45 primary HNSCCs were obtained
from archives at the Department of Surgical Pathology, The Johns
Hopkins Hospital. Five-µm sections were subjected to antigen
retrieval by boiling in PBS buffer for 15 s in a microwave. The
samples were allowed to slowly cool to room temperature. The sections
were then stained using the Vectastain ABC kit (Vector Laboratories,
Inc., Burlingame, CA). The primary antibody used was a guinea pig
polyclonal antibody generated against purified Mpp11p
(39)
. The latter was used at a dilution of 1:1000.
Finally, the Peroxidase Substrate kit DAB (Vector Laboratories, Inc.)
was used to visualize the immunohistochemical stain while
counterstaining with hematoxylin. All 10 cases were also stained with
H&E for localization of neoplastic cells. Slides were independently
reviewed and scored by a pathologist with extensive experience in head
and neck neoplasms (W. H. W.).
Cell Culture.
The HNSCC cell lines used were O11, O12, O13, O19, O28, and FaDu. All
of the cell lines were derived from histologically confirmed primary
HNSCCs resected from patients treated at the Department of
Otolaryngology-Head and Neck Surgery, The Johns Hopkins Hospital, with
appropriate Institutional Review Board approval. FaDu was obtained from
the ATCC.5
BEAS-2B (human bronchial epithelial
cells transformed with an adenovirus 12-SV40 hybrid virus) and
1106-KERTr (skin keratinocyte, HPV-16 E6/E7 transformed) were obtained
from ATCC. Cells were maintained in BEGM (Clonetics) and serum-free
keratinocyte medium supplemented with recombinant human epidermal
growth factor and bovine pituitary extract (Life Technologies),
respectively. Primary NHBE cells and the SAECs were obtained from
Clonetics and grown in appropriate media (Clonetics), according
to their instructions.
FISH Analysis.
Cytocentrifuge preparations of interphase HNSCC cell line nuclei on
glass slides were hybridized with a biotin-labeled, chromosome
7-specific
satellite probe (Oncor, Gaithersburg, MD) and a
digoxigenin-labeled MPP 11 probe (153m3). The
MPP11 probe was isolated from a BAC human genomic library
(Genome Systems, Inc., St. Louis, MO), using primers that amplify exon
3 of MPP11 (5'-ACTCCTGATGAAATGTCACTT-3' and
5'-TGGATTGCTTTCTTCTGA-3'). The biotinylated probe was detected by
subsequent incubation with FITC-conjugated avidin, biotin-conjugated
goat antiavidin, and again FITC-conjugated avidin. The
digoxigenin-labeled probe was detected by serial incubations with mouse
anti-digoxigenin, rabbit antimouse-TRITC conjugate, and goat
antirabbit-TRITC conjugate. Nuclei were counterstained with 1 µg/ml
4',6-diamidino-2-phenylindole, and the slides were mounted in an
antifade solution and observed in an epifluorescence microscope
equipped with triple-band-pass filter (4',6-diamidino-2-phenylindole,
TRITC, and FITC). Images were captured with a CCD camera and processed
using the Oncor Image analyzing system. Evaluation of the preparation
was performed by counting at least 100 nuclei/slide. The number of
MPP11 and chromosome 7 signals were counted for each
nucleus. The overall mean MPP11:chromosome 7 ratio was
calculated for each sample.
Western Blot Analysis.
Cell lines were grown to
85% confluence and lysed in modified RIPA
buffer [50 mM Tris-HCl (pH 7.5), 150 mM NaCl,
1% NP40, 0.5% sodium deoxycholate, 0.01% SDS, 1 mM
phenylmethylsulfonyl fluoride, and COMPLETE protease inhibitor cocktail
(Boehringer Mannheim)] and then submitted to five cycles of sonication
(10 s/cycle). One hundred µg of cell extract were run in 10%
Tris-HCl gels and transferred onto nitrocellulose membranes
(Sartorius), probed with anti-Mpp11p (39)
and antiactin
(Chemicon) antibodies, followed by the secondary antibodies,
horseradish peroxidase-conjugated anti-guinea pig antibody and
horseradish peroxidase-conjugated antimouse antibody (Pierce),
respectively.
| RESULTS |
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MPP11 Is a Widely Expressed Gene.
To assess the tissue expression pattern of MPP11, the cDNA
sequence was used as a BLAST query against the database of ESTs
(dbEST), and the top 20 human hits were evaluated. The lowest BLAST
score evaluated was 196 with an E-value of 8e-48. Four of the 20 hits
were clones originating from pooled libraries; therefore, only 16 hits
were scored. The cell types and tissues identified were: senescent
fibroblasts (gb AI086580), HeLa cells (AA189125), germinal center
B-cell (gb AA765155), colon (gb AA553955, AA524380, AA543065, and
AA131089), colon cancer (AA631261), promyelocyte (gb D20011), Ewings
sarcoma (AA639055), pregnant uterus (AA708608), testis (AI140595 and
AA833629), placenta (N29844), kidney (AI244518), and aorta (D79259). To
further verify the above results, a multiple tissue Northern was probed
with the insert from clone hbc408. The tissues surveyed included heart,
brain, placenta, lung, liver, skeletal muscle, kidney, and pancreas.
All of the tissues showed robust expression of a transcript of
2.6
kb in size, except lung which displayed a lower level of expression
(data not shown).
MPP11 Maps to 7q2231.1.
To evaluate MPP11 as a candidate for disease phenotypes, the
hbc 408 clone was submitted to the XREFdb project for mapping
(32)
. A Southern blot of TaqI-digested DNA from
The Jackson Laboratory BSS interspecific backcross DNA panel was
probed, and RFLP data were analyzed and positioned by The Jackson
Laboratory. Two loci were identified by this method, one 13 cM offset
on chromosome 5 and another 47 cM offset on chromosome 6. Analysis of
regions of synteny between mouse and human chromosomes inferred the
localization of the signals to 7q35qter and 2pterqter,
respectively. Human chromosome localization was also performed using
the same probe against DNA from a National Institute of General Medical
Sciences somatic cell hybrid panel (#2, version 2). The latter analysis
localized the probe to human chromosomes 3, 6, 7, and 12. Thus, the
combined analysis suggested that MPP11 was located in the
chromosomal region 7q35qter.
The map location of MPP11 was further refined by mapping of the cDNA against a YAC contig of human chromosome 7 (42) . Primers were designed to amplify a 523-bp fragment at the 3' end of the gene, which included an intron. The intron was identified by sequence analysis of an incompletely spliced cDNA clone in dbEST (IMAGE consortium clone 259842, gb N29844). The YAC contig was screened by PCR amplification from purified DNA, and positive YACs were then verified by Southern blot analysis using the insert of clone hbc 408 as a probe. This analysis further refined the physical map location of MPP11 to 7q2231.1.
Further evaluation of GenBank sequences identified a fully sequenced
BAC clone RG276O03 (gb AC004668) recently deposited in the database as
part of the sequencing phase of the Human Genome
Project.7
The 112 Kb sequence contained the entire genomic sequence for
MPP11 and was mapped to 7q2231.1. The intron exon
boundaries were defined by comparison of the cDNA sequence of
MPP11 to the genomic sequence. MPP11-S was found
to be comprised of 15 exons, whereas MPP11-L was comprised
of 17 exons (Fig. 2)
.
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Forty-five paired normal/tumor DNA samples from patients with HNSCC
were analyzed by microsatellite analysis at these markers. Thirty-eight
percent (17 of 45) of the cases displayed LOH/AI in this region. These
tumors were then further scored for LOH/AI relative to
MPP11. Of the 17 tumors that showed LOH/AI, 6 cases had
LOH/AI at all markers tested, 9 cases had centromeric LOH/AI including
MPP11, and 2 cases had telomeric LOH/AI including
MPP11 (Fig. 3)
. Tumors T1398, T853, T1048, T1039, and T1020 define the minimal region
of loss (or imbalance) within markers D7S3080 and
D7S501. Microsatellite instability was not detected in any
of the cases examined.
|
Mpp11p Is Overexpressed in HNSCC.
To distinguish between loss or gain of chromosomal material, all
available paraffin sections from the primary tumors in this study (10
of 45) were analyzed by immunohistochemical staining using an antibody
developed against purified Mpp11p. The subcellular localization of
Mpp11p has been characterized as both nuclear and cytoplasmic
(39)
. Immunohistochemical staining of normal epithelium
revealed staining of the germinal layer and prickle cell layer, with
sparing of the granular layer and the cornified layer (Fig. 4)
. In contrast, examination of the tumor sections revealed that 80% (8
of 10) of the tumors stained homogeneously with what appeared to be a
relative increase in staining intensity. Of the eight tumors that
stained strongly for Mpp11p, 75% (6 of 8) were found to display AI in
the analysis presented previously, whereas both tumors that displayed
normal to absent staining also displayed no AI.
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| DISCUSSION |
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Although the function of MPP11 is not known, this gene has been conserved throughout evolution, suggesting a similar function to that of its orthologues. MIDA1 interacts with Id-1 and may regulate its function, and Id-1 has been implicated in the processes of cellular differentiation and cell invasion (35 , 37) . Furthermore, a direct link between Id-1 and SV40 T antigen transformation has been shown (36) . ZUO1 may encode a ribosome-associated chaperone in yeast; however, it was first isolated as a gene encoding a DNA binding protein (33 , 34) . Most recently, ZUO1 has been implicated in the transcriptional regulation of CTF13, a gene encoding an essential kinetochore component in yeast and aberrations in the kinetochore function lead to chromosome missegregation (48) .9 Therefore, it is interesting that Mpp11p is identified by the MPM2 antibody, which also identifies multiple phosphoepitopes important in mitotically related structures (39) . These results suggest a regulatory role for MPP11 in the mitotic phase of the cell cycle, perhaps in the regulation of kinetochore function. Chromosome segregation, differentiation, and cell invasion are all processes that are intricately involved in the genesis and progression of human cancer; thus, MPP11 is a strong candidate gene in cancer.
A complete allelotype of HNSCC has identified LOH on chromosomes 3, 5, 9, 11, 13, and 17 occurring in 45% or more of cases examined (49 , 50) . The high frequency loss of chromosomes 3, 9, and 17 in early preinvasive lesions suggests these changes may occur early in the progression of HNSCC (44) . LOH at 7q has been reported to occur in 30% of HNSCC, and finer mapping at 7q31.1 has revealed LOH in >50% of cases (12 , 49) . On the basis of Knudsons hypothesis, we searched for mutations of the remaining allele in tumors with LOH at the MPP11 locus. We found no inactivating mutations. This result rejected the notion of a tumor suppressive role for MPP11. However, the same region was shown to be amplified in as many as 30% of HNSCC (17) . This apparent difference is reconciled by comparison of FISH analysis with the LOH/AI data. LOH is usually assumed to represent a relative loss or deletion of chromosomal DNA at a particular marker. However, chromosomal gains can manifest as a relative change in gene dosage or imbalance when compared with a normal control sample. FISH analysis reveals an increased copy number for this region, accompanied by chromosome 7 polysomy.
The latter observation is most consistent with the biological role of MPP11 as a mitogenic factor (33, 34, 35) . Our immunohistochemical analysis of primary HNSCC tumors revealed that Mpp11p was highly expressed in 80% of the cases examined. When normal epithelium was examined, Mpp11p expression was found to be restricted to the germinal and prickle cell layers. This result is of interest because these epidermal cell layers are the only epidermal histological layers that display cell division, a characteristic shared with cancerous cells. Furthermore, analysis of Mpp11p expression in HNSCC cell lines also showed an increased level of Mpp11-Lp expression relative to normal epithelial cell lines, as well as transformed epithelial cell lines, thus suggesting that the increase in Mpp11-Lp expression is not solely a marker of cell division. Mpp11-Sp expression was not detected in any of the epithelial cell lines examined, thus suggesting it is not important in the biology of normal or malignant epithelial cells.
These increases in Mpp11-Lp expression level appear to be attributable in part to increased copy number in both primary tumors (AI) and cell lines (increased copy number by FISH). Other mechanisms, such as increased transcription, probably contribute to changes in expression that are independent of genomic dosage, as was seen in several of our cell lines. Notwithstanding, these results lend support for a tumor-specific increase in Mpp11-Lp expression. The question remains as to whether the high expression Mpp11-Lp is an important change in the progression of cancer or simply a marker of tumorigenesis.
Increased copy number of MPP11 and overexpression suggest that this gene is activated during cancer progression. This notion is certainly consistent with the fact that many cancers become highly aneuploid and invasive at more advanced stages. Alternatively, another oncogene may reside near MPP11, within the minimally amplified region. A better understanding of the role played by MPP11 in human cancer awaits further characterization of the gene in other tumor types and additional studies that assess the ability of MPP11 to transform cells in vitro and in vivo.
| FOOTNOTES |
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1 This work was supported by National Institute of
Dental and Craniofacial Research grant RO1-DE01258801 (to
D. S.). V. A. R. is supported by National Institute of General
Medical Sciences Predoctoral Fellowship Grant GM 18041. O. L. C. is
supported by Fellowship 1998/2736-2 from the Fundacao de Amparo a
Pesquisa do Estado de Sao Paulo, Brazil. ![]()
2 To whom requests for reprints should be
addressed, at Department of Otolaryngology-HNS, Division of Head and
Neck Cancer Research, The Johns Hopkins University School of Medicine,
818 Ross Research Building, 720 Rutland Avenue, Baltimore, MD
21206-2198. E-mail: dsidrans{at}jhmi.edu ![]()
3 The abbreviations used are: LOH, loss of
heterozygosity; AI, allelic imbalance; HNSCC, head and neck squamous
cell carcinoma; FISH, fluorescence in situ
hybridization; YAC, yeast artificial chromosome; BAC, bacterial
artificial chromosome; ATCC, American Type Culture Collection; BEGM,
bronchial epithelial basal and growth medium; NHBE, normal human
bronchial epithelium; SAEC, small airway epithelial cell; TRITC,
tetramethyl rhodamine isothiocyanate; EST, expressed sequence
tag. ![]()
4 Internet address:
http://www.ncbi.nlm.nih.gov/BLAST/. ![]()
5 Internet address: http://www.atcc.org. ![]()
6 Internet address:
http://www.ncbi.nlm.nih.gov/XREFdb/. ![]()
7 T. Rohlfing et al., direct
submission. ![]()
8 The Genome Database, http://gdbwww.gdb.org/. ![]()
9 V. A. Resto, J. L. Corden, and P. Hieter,
manuscript in preparation. ![]()
Received 1/ 3/00. Accepted 8/ 1/00.
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