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Department of Medicine, Roswell Park Cancer Institute, Buffalo, New York 14263 [H. G. A., J. H.]; Division of Clinical Sciences, National Cancer Institute, Gaithersburg, Maryland 20877 [P. D. A.]; and Departments of Hematology and Bone Marrow Transplantation [S. J. F.] and Cytogenetics [L. T., M. L. S.], City of Hope, National Medical Center, Duarte, California 91010
| ABSTRACT |
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| Introduction |
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t(9;11)(p22;p15) is a rare abnormality that has been reported previously in a patient with a biphenotypic leukemia (9) . Here we describe the molecular characterization of the t(9;11)(p22;p15) chromosomal translocation detected in a patient with AML. We hypothesized that the NUP98 gene would be disrupted and that a chimeric gene fusing the NUP98 FXFG repeats in frame to a gene on chromosome band 9p22 would result.
| Materials and Methods |
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Cytogenetics.
A bone marrow sample was cultured and harvested for classical
cytogenetic analysis using standard methods. A 20-cell analysis was
done on GTG-banded metaphases. The PACs 1173K (NUP98)
and 47G3 (which maps telomeric to 1173K) were labeled with Spectrum
Green and Spectrum Red, respectively, by nick translation (Vysis,
Downers Grove, IL). Because 47G3 maps telomeric to NUP98 on
chromosome 11, translocations involving NUP98 will exhibit a
split NUP98 signal with a translocation of the complete 47G3
signal to the derivative chromosome 9. Residual cell pellets were used
for FISH analysis following standard procedures. A total of 200
interphase cells were scored.
Nucleic Acid Isolation.
Genomic DNA and RNA were obtained from frozen cell pellets of leukemic
cells (4)
. Control DNA and RNA were obtained from
peripheral blood cells from a normal volunteer. The studies were
approved by the Institutional Review Board, and informed consent was
obtained for use of patient materials in research studies
Southern Blots and Probes.
Southern blots were performed as described previously (7)
.
Probe A was a 1.24-kb EcoRI-HindIII NUP98 cDNA
fragment encompassing nucleotides 11248 (exons 19 and a portion of
exon 10). Probe B was a 1.4-kb HindIII-EcoRV
fragment encompassing nucleotides 12492628 (a portion of exon 10 and
exons 1119) of the NUP98 cDNA fragment (GenBank accession
number U41815) and was a kind gift from Dr. Julian Burrow (Center for
Cancer Research, Massachusetts Institute of Technology, Cambridge, MA;
Fig. 1B
).
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Reverse Transcription-PCR Analysis.
A NUP98 sense primer (NUP1100) and antisense primers from
the unique 3' untranslated regions of gene encoding p52 (911-04;
nucleotides 11651141; GenBank accession number AF098482) and p75
(LEDGF) (911-03; nucleotides 20392015; GenBank accession
number AF063020) were used to amplify potential NUP98-p52
and NUP98-p75 (LEDGF) chimeric cDNAs. Similarly,
a p52/p75 (LEDGF) sense primer (911-01; nucleotides 4061;
GenBank accession number AF098482) and a NUP98 antisense
primer (NUP8006; nucleotides 19811957) were used to amplify potential
p52/p75 (LEDGF)-NUP98 fusion mRNAs as described previously
(7)
.
| Results and Discussion |
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We used 3' RACE to identify a potential fusion transcript involving
NUP98. Sequence analysis of one of the positive clones
revealed that the sequence diverged from the NUP98 cDNA
sequence (GenBank accession number U41815) at nucleotide 1230. A BLAST
search showed that the sequence 3' of the divergence point was a
perfect match for the gene encoding the transcriptional coactivators
p52 and p75, also known as lens-epithelium derived growth factor
(LEDGF), both of which are derived by alternative splicing
of the same gene on chromosome band 9p22 (10)
. The
resultant in-frame chimeric mRNA joined nucleotide 1230 of
NUP98 to nucleotide 534 of the gene encoding p52 (GenBank
accession number AF098482), which corresponds to nucleotide 767 of the
published sequence for the cDNA encoding p75 (GenBank accession number
AF063020; Fig. 2A
). This is the most 5' NUP98 fusion point reported.
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The p52/p75 proteins are homologous to the HDGF and the HDGF-related
proteins 1 and 2. The highest degree of sequence identity (
80%) is
found in the NH2-terminal 98 amino acid residues,
also known as the HATH region (homologous to the
NH2 terminus of HDGF, Fig. 2C
).
The COOH-terminal region of p52 (also present in p75) shows similarity
to HMG-1, a multifunctional non-histone protein involved in many steps
of gene regulation. p52 is a potent general transcriptional coactivator
and is thought to mediate functional interactions between upstream
sequence-specific activators and the general transcription apparatus
(11)
. It has also been shown to interact with the
essential splicing factor ASF/SF2 to modulate pre-mRNA splicing
(12)
. p75 is a less potent coactivator than p52 and does
not functionally interact with ASF/SF2 (11
, 12)
. However,
it has been shown to function as a growth and survival factor for lens
epithelial cells, keratinocytes, and skin fibroblasts
(13)
.
The exact mechanism of leukemogenesis remains to be elucidated. One
possible scenario is the disruption of functions normally attributable
to NUP98 and/or p52/p75. Another scenario is a gain of function
attributable to the fusion protein(s). The COOH-terminal region of
p52/p75, which has similarity to HMG-1, is preserved in the critical
fusion message. However, the NH2-terminal HATH
region is lost and replaced by the NUP98 FXFG repeats (Fig. 2C)
, which have been shown to interact with cAMP-responsive
element-binding protein and possess strong transactivating
properties (14)
. This raises the possibility that the
fusion proteins are aberrant transcription factors. Finally, the
possibility that replacement of the NH2-terminal
HATH sequences by the NUP98 FXFG repeats in p75 results in a fusion
protein with deregulated growth-promoting and survival properties must
also be considered. The reason for the heterogeneous group of fusion
partners remains unknown. They are reminiscent of the various
MLL and ETV6 fusions. In all of the reported
translocations involving NUP98, the partner genes appear
to contribute functionally important domains that are retained in the
fusion proteins. It is interesting that three of the reported fusion
proteins are homeodomains. It is possible that the other partner genes
supply a general function.
In summary, we have cloned t(9;11)(p22;p15) and demonstrated an in-frame fusion between NUP98 and p52/p75 (LEDGF). Future experiments focusing on the structure-function relationships of the p52/p75 (LEDGF) gene and functional analyses of the two fusion proteins will provide new insights into the mechanism of leukemogenesis.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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1 Supported by a grant from the Roswell Park
Cancer Institute Alliance Foundation and NIH Grant CA-30206. ![]()
2 To whom requests for reprints should be
addressed. Present address: University of Wisconsin Cancer Center,
Wausau Hospital, 215 North 28th Street, Wausau, WI 54401.
Phone: (715) 847-2866; Fax: (715) 847-2869; E-mail: harisha{at}waushosp.org ![]()
3 The abbreviations used are: AML, acute
myelogenous leukemia; FISH, fluorescence in situ
hybridization; RACE, rapid amplification of cDNA ends; HDGF,
hepatoma-derived growth factor; PAC, P1 artificial
chromosome. ![]()
Received 5/19/00. Accepted 10/ 3/00.
| REFERENCES |
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