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Department of Medicine, the University of Sydney, NSW 2006 [A. C., S. H. M., Q. D.]; Departments of Anatomical Pathology [P. R.] and Urology [J. R.] and Kanematsu Laboratories [D. S. M., S. J. C.], Royal Prince Alfred Hospital, NSW 2050; and ANZAC Research Institute and Departments of Andrology [D. J. H.] and Anatomical Pathology [S. M.], Concord Repatriation General Hospital, NSW 2139, Australia
| ABSTRACT |
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| Introduction |
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| Materials and Methods |
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RNA/DNA Extraction.
Before nucleic acid extraction, fresh cancer specimens and normal
prostate were microselected (5)
. The tissue was
homogenized in TRI-reagent (Sigma Chemical Co., Sydney, NSW,
Australia). Total RNA and DNA were isolated following the
manufacturers protocol with the following modification regarding DNA.
After precipitation of DNA, the pellet was washed 3 times with 75%
ethanol to remove residual phenol. The pellet was then digested
overnight at 55°C in a lysis buffer [50 mM Tris,
100 mM EDTA, 0.5% SDS, and 0.3 mg/ml proteinase K (pH
8)]. DNA was isolated by standard phenol:chloroform:isoamyl alcohol
technique.
Suppressive Subtractive Hybridization.
Poly(A)+ RNA was isolated from total RNA of a
cancer specimen and a normal prostate of an organ donor using Dynabeads
oligo(dT)25 (DYNAL, Oslo, Norway). Using
PCR-Select cDNA subtraction kit (Clontech, Palo Alto, CA), subtracted
libraries were subcloned into pGEM T-easy vector (Promega, Madison,
WI). Individual recombinant colonies were randomly picked and
inoculated into 96-well plates containing L-broth and
ampicillin. Cloudy medium was used as template for PCR amplification of
the insert sequence. PCR products were dot blotted onto membranes.
Duplicate membranes were hybridized to subtracted radiolabeled cancer
and normal cDNA library, respectively. The sequence of differentially
expressed clones was determined by single direction sequencing.
RT-PCR.
Total RNA (2 µg each) was reverse transcribed into cDNA. For p36, PCR
was performed using primers derived from the nucleotides 971991 and
12131229 (GenBank accession no. D00017). For p11, PCR was performed
using primers derived from the nucleotides 138158 and 376394
(GenBank accession no. M38591). HPRT was amplified as a loading control
(5'-TTACTTTTCTAACACACGGTGGTA-3' and 5'-TTGCTGACCTGCTGGATTACATCA-3').
Thermocycling included an initial denaturation at 94°C for 2 min; 24
cycles (p36 and p11) and 30 cycles (HPRT) of denaturation (94°C for
30 s); annealing (30 s) at 55°C (p36), 51°C (p11), and 52°C
(HPRT); and elongation (72°C for 45 s). A water control
consisted of all reagents except template was included in each
experiment.
Northern and Southern Analyses.
Total RNA (15 µg) was denatured for 15 min at 65°C and
electrophoresed using a 1% formaldehyde agarose gel. The RNA was
transferred onto Hybond N nylon membrane. A PCR product (nucleotide
971-1229) of p36 cDNA was used as a probe. The membrane was hybridized
in ExpressHyb solution (Clontech) containing 1 x 106/ml cpm of denatured probe overnight at
68°C. Genomic DNA (10 µg each) was digested using
HindIII, PstI, and BglII. After
overnight digestion at 37°C, DNA was electrophoresed in a 0.8%
agarose gel and transferred onto nylon membrane after depurination,
denaturation, and neutralization. Radiolabeled probes were prepared
from two overlapping PCR products covering the entire open reading
frame of p36 gene. Hybridization condition was same as
Northern.
Immunohistochemistry.
Tissue sections (5 µm) were incubated for 1 h at 37°C after
microwave antigen retrieval with a mouse monoclonal anti-p36 antibody
(Zymed Laboratories) diluted 1/400 in 1% preimmune goat serum.
Biotinylated goat antimouse IgG, diluted 1/200 in 1% preimmune goat
serum, was used as the secondary antibody. The signal was amplified
using the avidin-biotin-peroxidase complex system (Vector Laboratories,
Burlingame, CA) and visualized using the liquid 3,3'-diaminobenzidine
substrate-chromogen system (Dako, Carpinteria, CA). Isotype and method
controls were performed for each sample by substituting the primary
antibody with preimmune mouse IgG (Dako) and 1% preimmune goat serum,
respectively. For p11, a mouse monoclonal anti-p11 antibody
(Transduction Laboratories) diluted 1/1000 was used. For 34ßE12 and
PSA, the antibodies were diluted 1/100 (Dako) and 1/600 (Dako),
respectively. Dako Envision + peroxidase (mouse K4001 for
34ßE12 and rabbit K4003 for PSA) was used as the signal detection
system.
5-Azacytidine Treatment.
LNCaP cells (0.5 x 106) were
cultured in T-medium (6)
with 10% heat-inactivated
fetal calf serum (FCS) for 2 days. A final concentration of 5
µM of 5-azacytadine was added to the culture medium from
a freshly prepared 5 M stock solution in DMSO. After 5 days
the cells were harvested and RNA isolated using TRI-reagent. The RNA
was DNase treated, and RT-PCR was performed as described above using
p36 primers.
| Results |
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Annexin II (p11) Protein in Normal Prostate, BPH, Prostate Cancer,
and PIN.
Because Annexin II light chain (p11) is always in complex with p36, the
absence of p36 expression in prostate cancer and in 65% of PIN
prompted us to examine p11 expression immunohistochemically (Fig. 2)
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In normal and BPH, p11 was expressed in the same cell type as p36.
Prostate cancer cells had also lost p11 expression. The small fraction
of p36-positive cancer cells in three cases also expressed p11.
However, we noticed in a few cancer cells that weak p11 expression was
present, whereas p36 was lost. p36-negative or -positive PIN remained
negative or positive for p11. Interestingly, despite the absence of p11
protein in prostate cancer, p11 mRNA levels remained unchanged when
compared with normal prostate (Fig. 1C)
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Association of Hypermethylation with Silencing of Annexin II (p36)
Gene Expression.
To address the question of whether the decrease in p36 mRNA level is a
result of a homozygous deletion in p36 coding regions in cancer DNA,
Southern analysis with three different endonucleases was conducted
using p36 open reading frame sequence as the probe on genomic DNA from
paired cancer tissue and blood leukocyte of the same patients
(n = 8). We found no difference between
cancer and blood DNA (data not shown). To establish if the
p36 gene has a CpG island spanning the promoter region and
could therefore be susceptible to hypermethylation, we used the
full-length p36 cDNA sequence to search for p36 genomic DNA sequences
from a high throughput genomic DNA database and obtained a sequence
from clone AC019146. Analysis of the upstream region of the gene has
shown a CpG island spanning the promoter, first exon, and intron of the
gene (Fig. 3)
. To determine whether methylation is associated with Annexin II
silencing in prostate cancer, we treated prostate cancer LNCaP cells,
which do not express p36, with 5-azacytidine (Fig. 4)
. p36 is expressed in normal prostate, blood, and DU145 prostate cancer
cells but is silent in prostate cancer and LNCaP cells. Annexin II
expression was reactivated in LNCaP cells after 5-azacytidine treatment
suggesting that methylation is associated with Annexin II silencing in
prostate cancer.
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| Discussion |
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To address the question of whether the >50% decrease in p36 mRNA level is a result of a homozygous deletion in the p36 coding region in cancer DNA, we conducted Southern analysis on genomic DNA from paired cancer tissue and blood leukocyte. Because our prostate cancer cases are sporadic, a somatic homozygous deletion in the p36 coding region in the cancer DNA should be revealed by comparing it with the paired blood DNA. Any point mutations or small deletions within the coding region of the p36 gene, which Southern analysis may not be able to detect, should not cause such a substantial decrease in p36 mRNA levels. We found no difference thus far between cancer and blood DNA, suggesting that the decrease in p36 mRNA level is likely attributable to alterations affecting the expression or processing of mRNA. Because DNA hypermethylation is commonly associated with silencing of tumor-related genes (1, 2, 3) , a preliminary study was conducted to examine the possible association of methylation with Annexin II silencing in prostate cancer. The finding that the p36 gene does have a CpG island in the promoter region and in the first exon and, more importantly, that p36 expression could be reactivated by treatment of prostate cancer LNCaP cells with a demethylation agent indicates that hypermethylation could be responsible for silencing of the p36 gene in vivo. However, because 5-azacytidine can also affect Sp1 transcriptional activity (18) , additional study by bisulphite sequencing of normal and cancerous prostate-derived DNA is needed to verify and identify methylation sites that distinguish cancer cells from normal cells. Although p36-positive cancer cells of case 5 was demonstrated by both Northern analysis and immunohistochemistry, it remains to be seen whether additional mechanisms besides mRNA transcription are involved in the down-regulation of the p36 protein, considering the fact that 28 of 31 cases had no p36 protein, whereas one of five cases showed unchanged p36 mRNA.
This study also provides evidence that high-grade PIN is not biochemically homogenous. It is known that not all PIN will progress to cancer (19) ; however, the lack of a progression-associated "marker" has prevented pathologists from stratifying the morphologically undistinguishable PIN. Although additional studies are required to correlate the p36-negative and -positive PIN with the incidence of cancer and prognosis, the fact that the vast majority of cancer cells show negative expression for p36 suggests that the p36-negative PIN is the true precursor of cancer. We speculate that p36-positive PIN cannot progress to cancer without loss of p36 expression first. However, because we have encountered three cases containing a small fraction of p36-positive cancer cells, it remains a possibility that p36-positive PIN can develop directly to p36-positive cancer.
A differential diagnosis among well-differentiated cancer, PIN, and non-neoplastic lesion is often required for needle-core biopsy, in particular when the number of glands is insufficient and/or the quality of a specimen is unsatisfactory (20) . Currently, 34ßE12 is the "gold standard" by highlighting the absence of basal cells in infiltrating cancer. However, it is problematic to additionally differentiate PIN from non-neoplastic glands because basal cells are present in both. The unique expression pattern of Annexin II-negative PIN, absent in glandular epithelial but present in basal cell, is in contrast to benign hyperplasia in which Annexin II is expressed in both cells and to the vast majority of cancer cells in which Annexin II expression is abolished and basal cells are no longer attached. Thus, identification of Annexin II provides a potential diagnostic marker for needle-core biopsy specimens.
| FOOTNOTES |
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1 This study was supported by the Medical
Foundation, and Endocrinology & Diabetes Research Foundation,
University of Sydney and National Health Medical Research Council. ![]()
2 To whom requests for reprints should be
addressed, at Department of Medicine, D06, University of Sydney, NSW
2006, Australia. Phone: 612-95155186; Fax: 612-95161273; E-mail: qhd{at}med.usyd.edu.au ![]()
3 The abbreviations used are: PIN, prostate
intraepithelial neoplasia; RT-PCR, reverse transcription-PCR; HPRT,
hypoxanthine phosphoribosyltransferase; DAB,
3,3'-diaminobenzidine; PSA, prostate-specific antigen; BPH, benign
prostatic hyperplasia. ![]()
Received 4/27/01. Accepted 7/11/01.
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