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Molecular Biology and Genetics |
Department of Pulmonary Diseases, University Hospital, 9713 GZ Groningen [J. W. G. v. P., H. J. M. G.]; Department of Internal Oncology, University Hospital Vrije Universiteit, 1007 MB Amsterdam [K. S., G. J. P.]; and Department of Radiation and Stress Cell Biology, University of Groningen, 9713 AV Groningen, the Netherlands [H. H. K.]
| ABSTRACT |
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| INTRODUCTION |
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dFdC itself is not active; its transport into the cell is mediated by facilitated diffusion (3) . Intracellularly, dFdC is phosphorylated to its active metabolites by deoxycytidine kinase to dFdCMP, dFdCDP, and dFdCTP. All three of the metabolites interfere with different steps in the processing of DNA. dFdCTP is incorporated into DNA and as such can obstruct DNA replication and repair (4) . dFdCTP can also be incorporated into RNA (5) and can inhibit CTP-synthetase (6) . dFdCMP can also inhibit dCMP-deaminase (7) . dFdCDP is an inhibitor of ribonucleotide reductase, and its action was shown to lead to depletion of the DNA precursor pool, dNTP (2 , 8 , 9) . These actions of dFdC will result in a self-potentiating mechanism because breakdown of dFdCMP is inhibited, whereas a reduction of dCTP will reduce feedback inhibition of deoxycytidine kinase, and inhibition of CTP-synthetase will also enhance incorporation of dFdC into RNA.
Ionizing radiation induces an array of lesions in DNA, including base damage, single-strand breaks and DSBs, and damage to the phosphodiester backbone. DNA DSBs are generally thought to be the most relevant lesion in radiation-induced killing of cells. In lower eukaryotes, such as yeast, DSBs are repaired by Rad52-dependent HR. Rad52 binds to DNA ends, thereby protecting them from exonuclease activity and activating end-to-end interactions and HR (10) . In vertebrates, DSBs are primarily repaired by Ku-dependent NHEJ (11) . Ku also binds to DNA ends, and NHEJ is facilitated by activating the DNA-PK (12) . DNA-PK consists of three subunits: the Ku protein being a heterodimer of the Mr 70,000 Ku70, the Mr 86,000 Ku80, and the large, Mr 450,000 DNA-PKcs.
In preliminary experiments with human small cell lung carcinoma cells, we found that dFdC treatment retarded the rate and extent of repair of DNA DSBs as detected by PFGE. However, others have reported no detectable effect on DNA DSB repair by dFdC (13) . To get a more clear insight into the possible role of DSB repair inhibition as a cause for dFdC radiosensitization, we measured the extent of sensitization by dFdC in cell lines defective in NHEJ. Rodent cell lines mutated in the gene XRCC5 encoding Ku80 (e.g., xrs5 and 6) or in the gene XRCC7 encoding DNA-PKcs (e.g., V3) have been found to be deficient in DNA DSB rejoining (14, 15, 16, 17, 18) . Also, isogenic xrs cell lines complemented with either the human Ku80 gene (xrs5+huKu80) or hamster Ku80 gene (xrs6+haKu80) that restored their radiosensitivity and DSB repair ability were included in the study (15 , 19 , 20) Finally, a DNA-PKcs-deficient cell line complemented with a YAC carrying the gene for DNA-PKcs (V3+YAC) was included in the experiments (18 , 21) . Results obtained with these mutated and complemented cell lines were compared with the parental wild-type cell lines (CHO-K1 and AA8).
| MATERIALS AND METHODS |
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All of our standard laboratory chemicals were purchased from Sigma (St. Louis, MO) or Merck (Darmstadt, Germany).
Gemcitabine Incubation and Irradiation Treatments.
Exponentially growing cells were incubated with 0.5 and 5
µM gemcitabine (dFdC; Eli Lilly, Nieuwegein, the
Netherlands) for 4 h. Thereafter, cells were trypsinized, followed
by neutralization of the trypsin with medium. Cell suspensions were
diluted in fresh complete medium to a density of about
106 cells/ml. Immediately thereafter, cells were
irradiated, using a 137Cs gamma-ray machine (IBL
637; CIS Biointernational, Gif-sur-Yvette, France) at a dose
rate of 0.9 Gy/min. The dosimetry was performed with an ionization
chamber (Philips 37489/19; Eindhoven, the Netherlands)
calibrated with a 90Sr source (Philips2011/00).
Cell Survival.
Cell survival (colony-forming ability) was determined by plating 100
µl of an appropriately diluted sample to triplicate plastic Petri
dishes (Nunc, Roskilde, Denmark), containing 5 ml of complete growth
medium. After 68 days of incubation, colonies were fixed with 70%
ethanol and stained with 0.5% crystal violet. Colonies containing more
than 50 cells were counted. The dose-enhancement ratio
(DER10%) was calculated by taking the
following ratio:
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PFGE Assay.
PFGE was used as developed by Blöcher et al.
(22)
. After incubation with or without 5
µM dFdC for 4 h, cells were irradiated on
ice and either processed immediately for estimating induction of DNA
DSBs or incubated up to 24 h at 37°C to allow for DNA repair.
For each individual sample, 2 x 107 cells were mixed with 1% low melting
point agarose (Bio-Rad, Hercules, CA) at 37°C to form
plugs. Next, cells were lysed by SDS-proteinase K treatment [2%
sarkosyl, 0.5 mg/ml proteinase K (Sigma), and 500
mM EDTA (pH 7.6) in PBS] for 2 h at 0°C
followed by 16 h at 37°C; they were then washed with PBS and
treated for 1 h with RNase A (0.2 mg/ml in PBS; Sigma) at 37°C.
After washing with TBE [45 mM Tris-base, 45
mM boric acid, and 2 mM
EDTA (pH 8.2)], the plugs were inserted into the wells of 0.5%
agarose gels (Chromosomal Grade; Bio-Rad). After clamped homogeneous
electric field (CHEF) electrophoresis (at 14°C and 40 V for 25 h
with switching interval of 75 min), the gel was stained with ethidium
bromide. The fraction of DNA migrating from the plug into the lane (%
DNA extracted) was measured using a UV-transilluminator (312
nM) and image analysis, as described previously
(23)
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Deoxyribonucleotide Extraction and Measurement.
Levels of dATP, dTTP, dCTP, and dGTP were measured in one run using the
DNA polymerase elongation assay method. dNTPs were extracted as
described previously (24)
. Briefly, cells were suspended
in 150 µl of ice-cold PBS, followed by adding 50 µl of 40%
trichloro-acetic acid (10% final concentration) to precipitate
proteins and nucleic acids; the cells were then chilled on ice for 20
min and centrifuged for 10 min at 10,000 x g
at 4°C. A 2-fold excess of freshly prepared trioctylamine and
1,1,2-trichlorotrifluoroethane (1:4) was added to neutralize the
supernatant. After centrifugation for 1 min at 10,000 x g at 4°C, the cellular extract containing dNTPs (upper
aqueous layer) was carefully taken off, divided in equal parts, and
stored at -20°C. Before assaying, the trichloro-acetic acid extract
was dried using a Speedvac drying system at room temperature and, if
necessary, stored at -20°C until analysis. The assay for dNTP was
based on the original DNA polymerase assay (25)
, optimized
by the use of 96-well plates (26)
and tailor-made
oligonucleotides (27
, 28)
and was performed as previously
described for dCTP (29)
. Dried samples were reconstituted
in assay buffer [200 mM HEPES and 20
mM MgCl2 (pH 7.3)] to a
final concentration equivalent to 107 cells/ml.
Samples and standards of 0, 1, 2.5, and 5 pmol of each dNTP were added
to DEAE filter plates (Millipore, Etten-Leur, the Netherlands). To all
wells, demiwater was added up to 30 µl, followed by 70 µl of
a reaction mix, consisting of 10 µl of
{[8-3H]dATP (25 µM;
1.6 Ci/mmol; 0.04 µCi/µl) for detection of dCTP, dTTP, and dGTP and
10 µl of [CH3-3H]dTTP
(25 µM; 30 Ci/mmol; 0.04 µCi/µl) for dATP
detection, 5 µl T-P mix [primer annealed to a tailor-made (for each
dNTP) oligo template], 5 µl of Klenow DNA pol I, and 50 µl of
assay buffer}. Filter plates were gently vortexed and
incubated at room temperature for 2 h. Each well was washed 4
times [in 0.25 M
KH2PO4 and 0.5
M KCl (pH 4.3)], the wet filters were punched
out in LSC vials, using a Multiscreen assay system as described
previously (29)
, Thereafter, 500 µl of 2
M NaOH was added to each vial, followed after 3-h
shaking by 4.5 ml of LSC fluid (Ultima Gold; Packard, Groningen, the
Netherlands). Samples were counted in a LSC counter (1900TR; Packard).
Levels were expressed as pmol/106 cells and, for
each experiment, were calculated as a percentage of the levels measured
in untreated cells.
Cell Cycle Analysis.
The amount of cells in a particular cell cycle phase was measured by
DNA flow cytometry (using FACSSTAR; Becton Dickenson) using the
histogram analysis software ModFit (Verity Software House; Topsham,
ME). Cells were diluted to a concentration of
106/ml, washed with PBS and 5 mM
MgCl2, and afterward dissolved in 80%
ethanol/acetone in a 1:1 ratio. This solution was stored for at least
18 h below 5°C. Cells were stained with propidium iodide for at
least 30 min at 37°C, followed by 10 µl RNase A using the
manufacturers protocol. Individual histograms of cells incubated with
and without dFdC were compared.
Measurement of Ku80 Protein Expression.
Cell lysates from CHO-K1, xrs6, and xrs6+haKu80 were loaded onto a
denaturing polyacramide gel. After electrophoresis, the proteins were
electrotransferred onto nitrocellulose (Bio-Rad) and probed for total
Ku80 protein using the anti-Ku80 antibody (kindly provided by Prof.
Steve Jackson, Wellcome/CRC Institute, Cambridge, United
Kingdom) at a 1:2500 dilution. As a loading control, anti-
-tubulin
(T5168; Sigma) was used at a 1:5000 dilution. This was followed by
binding of 1:2000 diluted peroxidase-conjugated donkey-antirabbit for
Ku80 (Amersham, Roosendaal, the Netherlands) or 1:5000 diluted
peroxidase-conjugated sheep-antimouse for
-tubulin (Amersham) and
detection of the proteins by enhanced chemiluminescence (Amersham).
Statistical Analysis.
Data of cell survival were analyzed using ANOVA in a repeated
measurement design with dose dFdC as factor. A P < 0.05 was
considered significant. Differences between
DER10% and changes in dNTP pools between
the different cell lines were compared with Levenes t test
for independent samples assuming equality of variances.
| RESULTS |
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Relationship between Different Ku80 Status and the Extent of
dFdC-mediated Radiosensitization.
xrs5 cells and xrs6 cells that are complemented with human or
hamster Ku80, respectively, have full complementation of cellular
radiosensitivity compared with xrs5 and xrs6. Xrs6+haKu80 has been
reported to express even higher levels of Ku80 protein than the
parental CHO-K1 (14)
. These higher Ku80 levels could
suggest the possibility of an inverse relationship between the level of
Ku80 expression and the extent of dFdC-induced radiosensitization (as
might be suggested from Fig 4
). To investigate this, Ku80 protein
levels were analyzed in CHO-K1, xrs6, and xrs6+haKu80. Using serial
dilutions and
-tubulin as a loading control, we confirmed the
absence of Ku expression in xrs6 cells. However, in our hands, Ku80
expression levels were similar in wild-type and complemented cells (Fig 7)
. Thus, an increase in Ku80 expression levels does not seem to explain
the observed differences in radiosensitization by dFdC. Direct
comparison of levels of Ku80 expression is not possible in the xrs5 and
xrs5+huKu80 panel because of differences in cross-reactivity of the
antibody to human Ku80 as present in the xrs5+huKu80 cells.
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| DISCUSSION |
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A remarkable finding was that the Ku80-complemented cells were significantly less sensitized to radiation by dFdC compared with parental cells, and Ku80-deficient cells even showed the highest levels of radiosensitization. Although this demonstrates that Ku80 is not the target for dFdC-mediated radiosensitization, it does suggest that Ku80 somehow interferes with the radiosensitizing action of dFdC. This interference is not attributable to different effects of dFdC on dNTP pools or cell cycle (re)distribution because these changed to the same extent in Ku80-complemented cells as in parental CHO-K1 cells. Although dFdC effects on cell cycle redistribution and dNTP pools may contribute to, or even be necessary for, dFdC-mediated radiosensitization (13) , we showed that they do not ultimately determine whether or not dFdC treatment is going to result in enhanced cellular radiosensitivity.
So, what could possibly be the critical action of dFdC leading to radiosensitization, and why is it strongly reduced in Ku80-complemented cells? If the observed decline in dATP is crucial for the radiosensitizing effect as has been suggested (2 , 30) , it is rather unlikely that this would affect a short-patch repair like NHEJ or base excision repair, both crucial for the repair of DNA damage induced by ionizing irradiation. Rather, effects on long-patch repair pathways such as nucleotide excision repair or HR would be expected. Indeed, recent data suggest that dFdC interferes with nucleotide excision repair (32) . However, because nucleotide excision repair plays no role in the repair of ionizing radiation-induced DNA damage, the most likely pathway remaining as a target for dFdC-mediated radiosensitization is HR. Although, in mammalian cells, HR is thought to be less dominant than NHEJ in the repair of DSBs, defects in HR do enhance cellular radiosensitivity (33) . It is currently thought that in mammalian cells HR is especially operational in (late) S and G2 phases of the cell cycle (10) . Interestingly, the extent of dFdC-induced radiosensitization was also shown to be higher for cells in late S phase and G2 phase than for the same cells in G1 phase (31) . Xrs5 and xrs6 are proficient in HR and still show radiosensitization after induction with dFdC. They have also shown to have near-to-normal S-phase radiosensitivity (34 , 35) . Taken together, these observations suggest that HR is involved in radiation sensitivity and in radiosensitization by dFdC. Along with this assumption, one may postulate why dFdC-mediated radiosensitization is higher in cells without Ku80 and lower in cells with Ku80. In the nucleus, Ku80 (NHEJ) competes with Rad52 (HR) for the DNA DSB ends (10) . In the absence of Ku80, a higher fraction of DNA DSBs may be processed by HR rather than by NHEJ. By assuming that HR is a target for dFdC, the proportion of DSBs processed by either NHEJ or HR determines the radiosensitizing efficacy of dFdC. This will result in higher levels of dFdC-mediated radiosensitization in Ku80-deficient cells. Inversely, higher levels of Ku80 could reduce the fraction of DNA DSBs being processed by HR, resulting in less dFdC-mediated radiosensitization. Although, we did not find higher expression levels of Ku80 in the Ku80-complemented xrs cells that showed the lowest level of radiosensitization, one could still assume that in the Ku80-complemented cells, the functional level of end-binding activity of Ku80 is higher.
| FOOTNOTES |
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1 To whom requests for reprints should be
addressed, at Department of Pulmonary Diseases, University Hospital,
Hanzeplein 1, 9713 GZ Groningen, the Netherlands. Phone: 31-50-3612357;
Fax: 31-50-3619320; E-mail: j.w.g.van.putten{at}int.azg.nl ![]()
2 The abbreviations used are: dFdC,
2',2'-difluoro-2'-deoxycytidine; dFdCMP, dFdC monophosphate; dFdCDP,
dFdC diphosphate; dFdCTP, dFdC triphosphate; dNTP, deoxynucleotide
triphosphate; DSB, double-strand break; HR, homologous recombination;
NHEJ, nonhomologous end-joining; DNA-PK, DNA-dependent protein kinase
complex; DNA-PKcs, DNA-PK catalytic subunit; PFGE, pulsed field gel
electrophoresis; YAC, yeast artificial chromosome; LSC, liquid
scintillation counting; CHO, Chinese hamster ovary. ![]()
Received 1/13/00. Accepted 12/ 7/00.
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