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Advances in Brief |
Departments of Oncology [J-S. K., H. C., T. G. N., B. S., T. W.], Pathology [B. S.], and Tumor Biology Training Program [T. G. N.], Lombardi Cancer Center, Georgetown University School of Medicine, Washington, DC 20007, and Laboratory of Population Genetics, Center for Cancer Research [T. D., J. J.], National Cancer Institute, Bethesda, Maryland 20892
| ABSTRACT |
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| Introduction |
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| Materials and Methods |
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Homologous recombination in Saccharomyces cerevisiae was then used to replace ß-catenin exons IIIV with a neoR gene, precisely substituting the initiating methionine of ß-catenin with that of the neoR gene. To do this, pRS425-ß-Cat was linearized in ß-catenin exon IV (XhoI). High-fidelity PCR was used to create a neoR gene with various sequence features on each end. These included 50 nucleotides of homology to ß-catenin exons II and IV for directing a specific recombination event with the subcloned ß-catenin genomic region and a PCR priming site to facilitate eventual identification of gene-targeted human cells (Fig. 1A)
. The linearized shuttle vector and the PCR-generated neoR gene were cotransformed into S. cerevisiae. Leu+ colonies were screened by PCR and sequencing to identify and characterize recombinants. The targeting vector was then shuttled into Escherichia coli, and its integrity was confirmed via restriction analysis and resequencing of critical junctions. The specific details of construction and the sequences of all PCR primers used are available from the authors on request.
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18 h after transfection, mixed with media containing 0.6 mg/ml G418 (Invitrogen), and distributed to 96-well plates. After
2 weeks of growth, individual colonies were transferred first to wells in a 24-well plate, then to a 25-cm2 flask. Cells in confluent flasks were trypsinized, and approximately one-third of the cells was used for preparation of genomic DNA, and two-thirds were used for cryopreservation.
Genomic PCR, Southern Blots, and DNA Sequencing.
Preparation of genomic DNA, PCR, Southern blots, and automated sequencing were all performed using standard techniques. Taq Platinum (Invitrogen) was used for PCR, according to the manufacturers instructions. For Southern blots, 5 µg of genomic DNA were digested with SphI, separated on a 1% agarose gel, and transferred to a Zeta-Probe nylon membrane (Bio-Rad, Hercules, CA). The membrane was prehybridized overnight at 60°C, then hybridized for 24 h at 60°C using a radiolabeled, PCR-generated probe for ß-catenin intron VI. The blot was then washed and imaged using a Molecular Dynamics phosphorimager.
Luciferase Assays.
TCF reporter assays were conducted with OT-TOPFLASH/OF-FOPFLASH (generously provided by Bert Vogelstein, Johns Hopkins School of Medicine, Baltimore, MD; Ref. 4
). Confluent HCT116 cells and gene-targeted derivatives were passaged 1:4 into the wells of a six-well plate. Approximately 24 h after plating, the cells were transfected with 600 ng of firefly luciferase reporter plasmids and 12 ng of tkRenilla (Promega, Madison, WI) as an internal control for transfection efficiency. The cells were washed once with PBS and harvested in 500 µl of 1 x passive lysis buffer at 24 h after transfection. Firefly luciferase and Renilla luciferase activities were measured with commercially available luciferase substrates (Promega), as recommended by the manufacturer.
Microarrays.
Total RNA from HCT116 cells and two independently derived, gene-targeted derivatives lacking the ß-catenin oncogene were prepared with TRIZOL Reagent (Invitrogen). The cRNA probes were prepared and hybridized to an U95A Genechip (Affymetrix, Santa Clara, CA), as recommended by the manufacturer. The hybridized array was stained with streptavidin-phycoerythrin conjugates and scanned using a Hewlett Packard GeneArray scanner. The signal intensities for the ß-actin and GAPDH genes were used as internal quality controls. The ratio of fluorescent intensities for the 5' end and the 3' end of these housekeeping genes was <2. Scanned images were analyzed with Microarray Suite 4.0 software (Affymetrix). No normalization was performed because the average intensities of the Genechips differed by less than 10%. Genes identified as absent or whose maximum expression was <200 in all three samples were excluded from the analysis. All expression intensities <50 were set to 50, and the fold change of a particular gene was determined as the average of fold changes between expression levels of the gene in HCT116 cells and in each of the gene-targeted derivatives.
Northern Blots.
Total RNA from HCT116 cells and gene-targeted derivatives was prepared with TRIZOL Reagent (Invitrogen) according to the manufacturers instructions. PolyA RNA was purified using the Messagemaker System (Invitrogen) as recommended by the manufacturer. PolyA RNA (10 µg) was subjected to agarose/formaldehyde gel electrophoresis. After staining and removal of formaldehyde, the RNA was transferred to a Zeta-Probe nylon membrane (Bio-Rad). The membrane was prehybridized in QuikHyb (Stratagene, La Jolla, CA) overnight at 68°C, then hybridized for 24 h at 68°C in QuikHyb containing a radiolabeled, PCR-generated DNA probe for the human BMP4 gene or the human GAPDH gene. The membrane was then washed and imaged using a phosphorimager (Molecular Dynamics). Band intensities were quantified using ImageQuant software (Molecular Dynamics).
BMP4 ELISA.
Equivalent numbers of human cells were plated in 25-cm2 flasks and allowed to grow to confluence (generally 23 days). The media were then changed to 2.5 ml of serum-free media and allowed to incubate on the cells for 48 h. The cells remained healthy during the conditioning period, despite the absence of serum. The conditioned media were then removed, centrifuged to remove any floating cells, and tested for the presence of BMP4 using a commercially available BMP4 ELISA according to the manufacturers instructions (R&D Systems, Minneapolis, MN). Dilutions of purified BMP4 protein standard were used to calibrate the assay.
| Results |
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To create gene-targeted clones, HCT116 cells were transfected with linearized ß-catenin targeting vector and individual drug-resistant clones isolated by limiting dilution. A group of 216 individual clones was obtained. Each clone was cryopreserved and used for the preparation of genomic DNA.
A PCR-based strategy was used to identify clones in which the targeting vector had integrated by homologous recombination. The sense primer (5'-TTTCATCACTGAGCTAACC-3') was located in intron II, and the antisense primer (5'-CTGGCACTTAACTCCTCATC-3') was located in intron VI, just outside the right homology arm of the targeting vector. The targeting vector was designed such that homologous integration would alter the size of the PCR product by deleting the endogenous intron II priming site and moving it 0.7 kb downstream (Fig. 1, A and B)
. As such, PCR products derived from wild-type ß-catenin alleles were predicted to be 2.5 kb, and PCR products generated from targeted alleles were predicted to be 1.8 kb. This recently developed PCR strategy was chosen because it provides an internal positive control in each PCR reaction without multiplexing (7)
. Twenty-six of the 216 clones were knockouts, a targeting frequency of 12%.
A Southern blot strategy was used to further confirm the knockouts, using SphI and a PCR-generated, radiolabeled probe located just downstream of the right homology arm. Wild-type alleles were predicted to be 3 kb, and targeted alleles were predicted to be 3.3 kb (Fig. 1C)
. As expected, parental HCT116 cells contained only wild-type alleles, and ß-catenin gene-targeted derivatives contained both wild-type and targeted alleles.
To determine which allele of ß-catenin had been deleted, PCR products derived from the untargeted allele were sequenced. Because the sequencing primer (5'-TGTTCTTGAGTGAAGGACTG-3') was located in the region deleted by the targeting vector, only the untargeted allele was sequenced. The wild-type allele remained in 58% of the clones, and the mutant (oncogenic) allele remained in 42% of the clones. Examples are shown in Fig. 1D
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Endogenous-activated ß-Catenin Is Required for TCF Reporter Activation.
Oncogenic ß-catenin is known to bind to members of the TCF family of transcription factors and provide a transcriptional activation domain, enabling the activation of TCF-responsive reporters. As such, TCF reporter assays were performed to provide functional verification of the genotypes of the HCT116 parental cells and gene-targeted derivatives and to test whether endogenous activated ß-catenin is necessary for TCF-mediated transcriptional activation. As depicted in Fig. 1E
, a TCF-responsive reporter was strongly activated in HCT116 parental cells (+/*). Reporter activity was decreased slightly in gene-targeted cells with only oncogenic ß-catenin (ko/*). As expected, reporter activity was completely abolished in gene-targeted cells with only wild-type ß-catenin (+/ko). Reporter activity was restored by cotransfection of an activated ß-catenin expression vector (data not shown; Ref. 8
). Similar results were obtained using other TCF-responsive reporters as well (data not shown). These results provided independent confirmation of the genotypes described above and demonstrate that activated ß-catenin is absolutely necessary for TCF-mediated transcriptional activation in human cancer cells.
Identification of ß-Catenin-regulated Genes.
Affymetrix U95A Genechips (containing probes for approximately 9,000 human genes) were used to identify genes more highly expressed in HCT116 cells than in gene-targeted derivatives lacking the oncogenic allele of ß-catenin. Two gene-targeted clones of identical genotype were studied to reduce the potential for identifying clone-specific artifacts. The gene expression profiles were remarkably uniform between the three samples, with correlation coefficients between pairs of samples > 0.967. Genes whose expression was
3-fold higher in HCT116 cells than in each of the gene-targeted clones are depicted in Table 1
. The gene encoding BMP4 was expressed
15-fold more highly in parental HCT116 cells than in either of the gene-targeted derivatives lacking oncogenic ß-catenin. The expression difference was detected by probe sets for both the BMP4 and BMP2B genes, two different identifiers for the same gene (BMP2B; data not shown). Other intriguing genes include a putative methyltransferase, several genes involved in immune system function, and motor proteins involved in cytokinesis.
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21-fold more highly in both HCT116 and SW837 cells (381 and 409 tags/million, respectively) than in normal colonic mucosa (19 tags/million). On the basis of: (a) the magnitude and consistency of the Affymetrix Genechip and SAGE data; (b) the potential biological ramifications of a linkage between Wnt and BMP signaling in human cancer pathogenesis; and (c) the recent report of BMP4 receptor mutations in a rare gastrointestinal cancer predisposition syndrome (10) , we decided to focus our efforts on better characterizing the regulation of BMP4 by oncogenic ß-catenin in human cancer.
Oncogenic ß-Catenin Is Required for BMP4 Expression.
Northern blots were performed to confirm the BMP4 expression difference and determine whether it was specific for deletion of the mutant, oncogenic allele of ß-catenin. BMP4 expression was measured using polyA RNA derived from HCT116 parental cells and two independently derived gene-targeted clones of each genotype, using a PCR-generated, radiolabeled probe specific for human BMP4 (Fig. 2)
. Expression of BMP4 was highest in HCT116 parental cells. BMP4 expression was reduced
30% in HCT116 cells in which the wild-type allele of ß-catenin had been deleted. This result is consistent with the TCF reporter assays described above and suggests an unexpected synergy between the oncogenic and wild-type forms of ß-catenin protein. Strikingly, expression of BMP4 was virtually extinguished in HCT116 cells in which the oncogenic allele of ß-catenin had been deleted.
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Levels of secreted BMP4 were measured in four colon cancer cell lines with well-characterized APC gene mutations and concomitant activation of ß-catenin: (a) SW480; (b) HT29; (c) DLD1; and (d) LoVo (11)
. As shown in Fig. 3B
, each cell line secretes high levels of BMP4, consistent with the hypothesis that cancers with activated ß-catenin overexpress BMP4. Of note, 293 cells, a nontransformed human cell line lacking activated ß-catenin, failed to secrete measurable levels of BMP4 protein.
| Discussion |
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BMP4 is a member of the TGF-ß superfamily of growth factors and was initially identified by its ability to induce bone formation (15) . Studies of BMP4 orthologs have revealed that the growth factor has pleiotropic activities in cellular differentiation and organismal development, e.g., classic embryological studies in Xenopus laevis embryos have demonstrated that BMP4 is critical for dorsal-ventral patterning of both mesoderm and ectoderm (16) . Of note, ventral ectoderm is the precursor to epithelial cells. Additionally, the Drosophila melanogaster BMP4 ortholog decapentaplegic plays critical roles in developmental processes, such as formation of the embryonic dorsal-ventral axis and dorsal closure (17) .
Members of the TGF-ß family of signal transduction molecules are well known to play important roles in cancer pathogenesis. Mutations have been found in two general classes of TGF-ß signal transduction molecules: (a) receptors; and (b) intracellular signal transduction molecules known as SMADs (reviewed in Ref. 18 ). In addition, perhaps most intriguing in light of our finding, it was reported recently that inactivating mutations in the BMP receptor subunit BMPR1A can cause juvenile polyposis syndrome, a rare gastrointestinal cancer predisposition syndrome (10) .
As described above, the vast majority of genetic data suggests that inactivation of signaling by TGF-ß family members is a pathogenic mechanism in human cancer. However, the data reported here suggest that activation of BMP4 might be an important mechanism in the pathogenesis of sporadic human colon cancers. We cannot yet reconcile these seemingly disparate observations but expect that they will point us in the direction of underlying fundamental simplification.
In summary, we have identified BMP4 as a gene potently regulated by activated ß-catenin in human cancer cells. As a molecule well known to be involved in epithelial cell differentiation, BMP4 is a particularly intriguing candidate as a mediator of early events in epithelial cell transformation. Additional work will attempt to identify the biochemical basis for the regulation described herein, correlate BMP4 overexpression with the presence of activated ß-catenin in a wide variety of human tumor types, and study the phenotypic consequences of BMP4 overexpression in the pathogenesis of human cancer.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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1 Supported by NIH Grant K01 CA87828 (to T. W.), ACS Grant IRG-97-152-04 (to T. W.), and the Lombardi Cancer Center Support Grant (P30 CA51008). T. W. is a V Foundation Scholar and the recipient of a Career Development Award from the American Society of Clinical Oncology. ![]()
2 To whom requests for reprints should be addressed, at Lombardi Cancer Center, Georgetown School of Medicine, Research Building, Room E304, 3970 Reservoir Road, N.W., Washington, D.C. 20007. Phone: (202) 687-1340; Fax: (202) 687-7505; E-mail: waldmant{at}georgetown.edu ![]()
3 The abbreviations are: TCF, T-cell factor; BMP, bone morphogenetic protein; SAGE, serial analysis of gene expression; GAPDH, glyceraldehyde-3-phosphate dehydrogenase; APC, adenomatous polyposis coli; TGF, transforming growth factor. ![]()
4 Internet address: http://repeatmasker.genome.washington.edu. ![]()
5 Internet address: http://www.ncbi.nlm.nih.gov/SAGE/. ![]()
Received 1/18/02. Accepted 4/ 1/02.
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