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Molecular Biology and Genetics |
Division of Medical and Molecular Genetics, Guys, Kings and St. Thomas School of Medicine, London SE1 9RT [D. G., R. F., E. S.]; Department of Biology, Imperial College of Science Technology and Medicine, London SW7 2AZ [S. V. O.]; Department of Academic Haematology, Royal Marsden Hospital, London SW3 6JJ [R. M.]; Department of Haematology, University of Birmingham, Birmingham B15 2TH [C. F. C.]; and Department of Haematology, University College London Medical School, London WC1E 6M2C, [D. G., S. J. I., A. R. P., D. C. L.], United Kingdom
| ABSTRACT |
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| INTRODUCTION |
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oncoprotein (reviewed in Ref. 1
). This subtype of AML is of particular interest, being the first leukemia for which differentiation therapy, in the form of all-trans-retinoic acid, which directly targets the underlying molecular lesion, has been successfully used in clinical practice (1)
. The nature of the hemopoietic stem cells subject to leukemic transformation in AML has not been firmly established. Studies concerning engraftment characteristics of primary AML blasts in nonobese diabetic/severe combined immunodeficiency mice support the concept of a leukemic stem-cell pool that gives rise to leukemic blasts that retain a limited differentiation capacity (2)
. However, in contrast to the majority of cases of AML, blasts from patients with APL fail to engraft in NOD/SCID mice, which suggests that, in this particular subgroup, leukemic transformation may occur in committed myeloid progenitors (2)
. This is in agreement with the conclusions drawn from population-based mathematical modeling of APL development (3)
and the finding that the PML-RAR
fusion is detected within the CD34+CD38+ bone marrow subset and not within more primitive CD34+CD38- progenitors (4)
. Intriguingly, given that APL is generally considered one of the most differentiated subsets of AML, a proportion of cases have been reported to express the T-lymphoid affiliated glycoprotein CD2 at the cell surface (5, 6, 7, 8, 9)
. Mechanisms underlying surface expression of lymphoid-affiliated antigens in AML are currently unknown. There has been a longstanding debate as to whether this phenomenon indicates that such leukemias represent expansions of rare stem cells that coexpress lymphoid and myeloid antigens ("lineage promiscuity"; Ref. 10 ) or alternatively arise in lineage-committed cells in which the presence of "inappropriate" surface markers reflects aberrant gene expression associated with leukemogenesis ("lineage infidelity"; Ref. 11 ). However, it is now apparent that there is greater plasticity in hemopoietic stem cells than previously envisaged (reviewed in Ref. 12 ), raising the possibility of further models that involve "de-differentiation" or "trans-differentiation" of progenitors after the acquisition of leukemogenic oncogenes before leukemic expansion. Such processes could entail reexpression of other lineage-associated genes.
Understanding the molecular basis of expression of lymphoid-affiliated genes in AML may provide insights into the progenitors subject to leukemic transformation. Previous studies of chromatin structure in leukemia have had a potential disadvantage in that they have been entirely restricted to established cell lines and, therefore, may not be fully representative of the regulation of lineage-affiliated genes during normal hemopoietic development or, indeed, in primary leukemic blasts. For these reasons it is critical to examine these phenomena in primary leukemias; therefore to serve as a model, we have studied long-range chromatin structure surrounding the CD2 gene by a DNase I hypersensitivity assay in APL.
In cells of T-cell lineage, hypersensitive sites have been identified in the 5' and 3' flanking regions of CD2 corresponding to key regulatory elements (see Fig. 1
); whereas the CD2 locus is inaccessible to DNase I in cells of B-cell lineage and nonhemopoietic tissues (13, 14, 15, 16, 17, 18)
. Hypersensitivity in the 3' flanking region corresponds to the LCR and has been detected in lymphomyeloid progenitors (KG1 cells) and cells of T-lineage (13, 14, 15
, 17)
. Functional activity of the LCR in overcoming repressive effects mediated by constitutive heterochromatin has recently been shown to be dependent on the integrity of a binding site for HBP1 (19)
, which is implicated in chromatin remodeling and which also enhances activity of the promoter of the MPO gene (20)
. Two 5' hypersensitive sites have been identified in the CD2 locus and have also been reported to be restricted cells of T-lineage. DHS 2 is located
50 bp upstream from the transcription start site and relates to the minimal promoter (16)
. DHS 1 is situated 1.8 kb farther toward the 5' end, related to a region that includes downstream silencer and upstream activator (derepressor) activities (18)
. In the present study, we demonstrate that the CD2 locus lies within an open chromatin domain in all of the APL cases examined, which suggests that this subtype of AML may arise in more primitive progenitors than previously considered to be the case.
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| MATERIALS AND METHODS |
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fusion gene and distinguish 5' (bcr 3) and 3' (bcr 1, bcr 2) PML breakpoint patterns was performed as described previously (24)
. In addition, two cases of AML FAB type M1 and a case of B-lineage leukemia, B-PLL, were also studied, after informed patient consent.
Immunophenotype Analysis.
Immunophenotyping was performed as described previously (25)
. All flow cytometry measurements were performed on a FACScan flow cytometer (Becton Dickinson, San Jose, CA) using the Cell Quest software for data acquisition and analysis. A gate was set on the FSC/SSC plot to analyze data on the blast gate. Double labeling was performed using FITC-conjugated anti-CD2 (Caltag Laboratories, Burlingame, CA) in combination with phycoerythrin-conjugated antibodies against CD3 (T-lineage), CD34 (hemopoietic stem cell), CD117 (c-kit), B-lineage marker CD19 (Caltag; Coulter), or early myeloid markers CD13 and CD33 (Coulter, Hialeah, FL). The after combinations of antibodies were selected to establish CD2 expression in APL and other AML samples (CD2/CD34, CD2/CD13, CD2/CD33, and CD2/CD117), to determine the degree of T-cell contamination in clinical samples used for DNase I hypersensitivity assays (CD2/CD3), and to characterize B-lymphoid leukemias used as negative controls in this assay (CD2/CD19). CD2 positivity was defined on the basis of the antigen being detectable at the surface of at least 20% leukemic cells. Relative expression of CD2 on the cell surface of APL blasts, T-lymphoid cell lines, and normal T-lymphocytes was determined by fluorescence quantification using the Quantum Simply Cellular (QSC) Microbeads kit (Sigma, St. Louis, MO). This system converts the peak channel reading relating to positive cells into a measure of ABC, thereby providing an indication of the relative number of molecules expressed on the cell surface, as described previously (25
, 26)
. For clinical samples and cell lines, at least 5000 events were acquired using identical instrument settings for FL1 and FL2 to those used for microbead analysis.
RQ-PCR.
CD2 and HBP1 mRNA expression levels in cell lines, primary APL blasts, and normal peripheral T-cells were determined by RQ-PCR, using Taqman technology and an ABI 7700 (Applied Biosystems, Foster City, CA). Primer/probe sets to detect CD2 and HBP1 cDNA were designed using the Primer Express software (Applied Biosystems), in accordance with the manufacturers instructions: CD2, forward primer, 5'-ACAGAGGAGTCGGAGAAATGATG-3', and reverse primer, 5'-CAGGTGGTGGAGGAGGATGT-3', and Probe, 5'-FAM-TCAACCCCTCAGAATCCAGCAACTTCC-TAMRA-3'; and HBP1, forward primer, 5'-GAAGGCTGTGATAATGAGGAAGATC-3', and reverse primer, 5'-TACACTTTCTTCATGTGATAACAACTTTAGA-3'; and Probe: 5'FAM-CAGAACCATAGCCCTTGTGAATGCCCA-TAMRA-3'.
Expression of CD2 and HBP1 was compared with two different endogenous controls: ABL and ß2-microglobulin (ß2M), using published primers and probe sets (27) for which comparable expression has been documented between normal hemopoietic cells and acute and chronic leukemias (28) . All of the RQ-PCR assays were confirmed to specifically amplify cDNA. Primer and probe concentrations were optimized according to the manufacturers protocol. PCR reactions were performed in a 25-µl volume, containing 2x PCR universal mastermix (Applied Biosystems), 300 nM primers, 200 nM probe, together with 100 ng of cDNA as template. cDNA synthesis and the thermocycling conditions for PCR were as described (29) ; water controls were included for both the reverse transcriptase and PCR steps. Reactions were performed in triplicate, and gene expression level was derived from the respective standard curve run in parallel. Plasmid standards for each target gene were generated and serially diluted to encompass the range of expression levels encountered in hemopoietic cells (29) . To control for variations in RNA quality or quantity and efficiency of the reverse transcriptase step, expression of CD2 and HBP1 were normalized for that of the control genes.
DNase I Hypersensitivity Assays.
Assays were performed, based on the method of Wotton et al., (13)
using a variety of hemopoietic cell lines, peripheral blood T-lymphocytes (cultured in the presence of 2 µg/ml PHA, 20 ng/ml IL-2 (courtesy of V. Morales, A. Lawrence, and D. Cantrell, Imperial Cancer Research Fund, London), and cells derived from patients with newly diagnosed (untreated) acute or chronic leukemia. Typically, 27 x 108 cells were used for each assay. Blast percentages exceeded 90% of the mononuclear cell fraction in all of the primary leukemia cases examined (median, 98%; range, 9199%). DNA was prepared from nuclei that were digested with a series of DNase I concentrations, including an untreated control; then it was digested with an appropriate restriction enzyme (BamHI for 5' sites, DHS 1 and 2, and EcoRI for analysis of DHS 3). Positions of the cDNA probes, relative to the hypersensitive sites are shown in Fig. 1
. Probe A, which detects a 9-kb genomic fragment containing the first and second exons, was used to identify 5' hypersensitive sites; the presence of additional bands of 2.6 and 0.8 kb in digests of DNA prepared from DNase I-treated nuclei was indicative of the presence of DHS 1 and DHS 2, respectively. Probe B, which detects a 20-kb genomic fragment including the fourth and fifth exons, was used to identify DHS 3, which was indicated by an additional 3.6-kb band in digests of DNA prepared from DNase I-treated nuclei. DHS 3 corresponds to the strong tissue-specific enhancer in the region of the LCR (13, 14, 15)
. In samples lacking detectable hypersensitive sites, efficacy of DNase I and restriction enzyme digestions was confirmed by rehybridization of filters to probes L1 and 
(gift from Prof. D. R. Higgs, Institute of Molecular Medicine, Oxford) designed to detect constitutive hypersensitive sites within the
-globin promoter and the upstream regulatory element, HS-40 (30)
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| RESULTS |
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Determination of the Chromatin Structure Surrounding the CD2 Gene in APL.
To serve as controls for the analysis of primary leukemic samples, DNase I hypersensitivity assays were performed in CD2-positive T-lineage Jurkat cells and normal donor peripheral T-lymphocytes cultured in IL-2 and PHA, as well as in CD2-negative B-lineage Daudi cells. The CD2 locus was found to lie within open chromatin in T-lineage cells (Table 1
; Fig. 3A
), whereas 5' and 3' flanking regions were inaccessible to DNase I in Daudi cells (Table 1
; Fig. 3C
), in accordance with previous studies (13)
. Analysis of leukemic blasts derived from five patients with CD2-positive APL, revealed an identical pattern of hypersensitive sites to that detected in normal T-lymphocytes and Jurkat cells (Table 1
; Fig. 3, E and F
). Interestingly, all three sites were also detected in each of the six cases of APL studied that were found to lack surface expression of CD2 (Table 1
; Fig. 3, G and H
). In all of these cases, immunophenotype analysis of mononuclear cells used for DNase I hypersensitivity assays revealed that T-lymphocytes comprised <2%, such that it can be assumed that the hypersensitive sites that were detected were a true reflection of the chromatin structure surrounding CD2 in the leukemic population, rather than an effect caused by contaminating lymphocytes. This was confirmed by an analysis of a chronic B-cell neoplasm (PLL), revealing a closed chromatin pattern (Fig. 3D)
identical to that detected in the Daudi cell line (Fig. 3C)
.
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| DISCUSSION |
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The presence of hypersensitivity in the 3' regulatory region of CD2 has previously been correlated with T-lineage potential (13) . This region contains a LCR that includes enhancer elements that together are able to confer high-level tissue-specific expression of a CD2 transgene, independent of the site of integration (14 , 32) . Hence, it was of interest to detect hypersensitivity in this region in myeloid leukemia cells and primary APL blasts, because a variety of experimental data have suggested that this latter form of leukemia arises from committed myeloid progenitors (2, 3, 4) . Recently, evidence has emerged supporting a role for HBP1 in the functional integrity of the LCR, although other factors binding in this region may also be implicated (19) . In the present study, we found no correlation between HBP1 mRNA expression and the presence of DHS 3. Furthermore, there was no relationship between HBP1 expression and that of CD2 mRNA or protein. Therefore, transcriptional regulation of HBP1 is unlikely to account for lineage-associated differences in CD2 expression, which may depend on tissue-specific factors interacting with 5' and/or 3' regulatory elements (17 , 33) .
There are currently no data regarding the chromatin configuration of lineage-affiliated genes in human bone marrow progenitors. However, DNase I hypersensitivity assays performed in multipotential, mouse bone-marrow progenitor cell lines have demonstrated that the regulatory regions of a number of genes the products of which have been considered lineage restricted, including ß-globin, CD3
, IgH, and MPO, lie within open chromatin before lineage commitment (34, 35, 36)
. Interestingly, the CD3
enhancer was found to remain accessible to DNase I after the differentiation of FDCP cells into mature granulocytes (34)
; the possibility that regulatory regions of the CD2 locus are accessible to DNase I in the same experimental system remains to be addressed. Single-cell reverse transcriptase-PCR approaches have also established that multiple-lineage-associated gene products are coexpressed in multipotential hemopoietic progenitors derived from human or mouse bone marrow (37
, 38)
. There are a number of ways in which our data can be interpreted. However, the identification of T-lineage chromatin features in APL, taken together with the experimental evidence suggesting that multiple lineage-affiliated genes are poised for transcription in early progenitors, is in accordance with the "lineage promiscuity" model to account for the inappropriate lineage-marker expression in acute leukemia (10)
. This hypothesis suggests that such leukemias originate in hemopoietic stem cell progenitors that coexpress various lineage-associated antigens (10)
. Further support for this view is derived from the identification of rare stem cells coexpressing CD2 and myeloid-associated antigens in normal marrow (39)
, and from studies correlating CD2 expression in APL with the presence of the B-lineage surface marker CD19 (7
, 8)
. Taken together, these data would imply that APL may arise in more primitive progenitors than previously considered to be the case (2, 3, 4)
. Indeed, a recent study in which highly purified human bone marrow progenitors were transduced with retroviral vectors carrying the PML-RAR
fusion lends support to such a concept, being consistent with the possibility that expression of the fusion protein in early progenitors could induce the APL phenotype (40)
.
An additional key question relates to the reason why approximately one-fourth of APL cases express detectable levels of cell-surface CD2, whereas the remainder do not (7)
. In this regard, it is of interest that CD2 expression is closely correlated with hypogranular variant morphology and expression of the stem cell marker CD34; this contrasts with the classical hypergranular form of APL, which typically expresses neither surface marker (6, 7, 8, 9)
. This raises the possibility that these morphological subsets of APL, which are both characterized by the PML-RAR
fusion, could arise from different hemopoietic progenitor populations. Therefore, the potential for CD2 expression in APL could be determined by the nature of the progenitor subject to leukemic transformation, particularly its stage along the myeloid differentiation pathway. According to this scheme, CD2+CD34+ APL variant cases would arise from the most primitive precursors, whereas CD2-CD34- classical cases are derived from the least primitive progenitors. If this is shown to be the case, it could reconcile contradictory data as to whether PML-RAR
expression is detectable in multipotential progenitors (4
, 41)
and also account for differences in sensitivity of hypergranular M3 and M3v cases to ATRA in vitro (42)
. It would, therefore, be of interest to determine the chromatin environment surrounding the CD2 locus in a larger series of primary cases of hypergranular APL; however, this would be technically difficult because such cases typically present with pancytopenia, which limits the possibility of obtaining sufficient blasts to perform DNase I hypersensitivity assays. Nevertheless, in agreement with the findings in primary M3v, 5' and 3' flanking regions of CD2 were accessible to DNase I in the single case of primary classical M3 examined and in the NB4 cell line that was originally derived from a patient with hypergranular APL (43)
. It would also be interesting to determine to what extent other epigenetic mechanisms, particularly subnuclear location and relationship to pericentric heterochromatin (44
, 45)
, play a role in CD2 regulation in normal hemopoiesis in humans and whether this is disturbed during leukemogenesis. It is hoped that addressing these possibilities will not only establish mechanisms accounting for the detection of lymphoid markers in AML but will also provide additional insights into the processes determining expression of lineage-affiliated genes, the nature of the progenitors targeted by the t(15;17), and, hence, the pathogenesis of APL.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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1 Supported by the Medical Research Council, Imperial Cancer Research Fund, Leukaemia Research Fund, European Union (BMH4CT983745), and Special Trustees of Guys Hospital. ![]()
2 To whom requests for reprints should be addressed, at Division of Medical and Molecular Genetics, Guys, Kings and St. Thomas School of Medicine, Cancer Genetics Laboratory, 8th Floor, Guys Tower, Guys Hospital, London SE1 9RT United Kingdom. Phone: 44-207-955-5000, extension 5585; Fax: 44-207-955-8762; E-mail: david.grimwade{at}kcl.ac.uk ![]()
3 The abbreviations used are: APL, acute promyelocytic leukemia; AML, acute myeloid leukemia; LCR, locus control region; HBP1, HMG-Box containing protein 1; MPO, myeloperoxidase; FAB, French-American-British; FSC/SSC, forward scatter/side scatter; ABC; antibody-binding capacity; RQ-PCR, real-time quantitative reverse transcriptase-PCR; PHA, phytohemagglutinin; IL, interleukin; PLL, prolymphocytic leukemia; M3, classical hypergranular APL; M3v, hypogranular/microgranular variant form of APL. ![]()
Received 12/ 6/01. Accepted 6/20/02.
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