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Tumor Biology |
Department of Internal Medicine, University Mainz, 55131 Mainz, Germany [M. K., Ö. T., C. B., P. K., C. H., U. S.]; Institute of Pathology, University Mainz, 55131 Mainz, Germany [H-A. L., J. B.]; Institute of Pathology, Clinical Center Bamberg, 96049 Bamberg, Germany [G. S.]; and Department of Dermatology, University Hospital Zuerich, 8091 Zuerich, Switzerland [F. O. N.]
| ABSTRACT |
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| INTRODUCTION |
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| MATERIALS AND METHODS |
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Data Mining for Selection of Candidate Genes.
For identification of candidate genes for expression analysis, a keyword search was performed in GenBank (ENTREZ Search and Retrieval System, Release 08/20/2000) at NCBI for genes annotated to be expressed specifically in testis. A nucleotide sequence file was generated searching for testis-specific gene, sperm-specific gene, and spermatogonia-specific gene, respectively, limited to Homo sapiens in the organism field and mRNA for molecule in the GenBank flat-file, excluding all ESTs, genomic sequences, and partial coding sequences. Redundancies were excluded by using sequence homology searching program BLASTN6
with the homology stringency set high and GeneCard database.7
Because the search criterion relies on the uncurated annotation provided by the submitting authors, an additional filter is required. Therefore, PubMed was accessed for additional confinement, disclosing published data proving expression in nontesticular normal organs for several of these genes.
eNorthern.
All remaining genes were tested for their tissue distribution by eNorthern. Briefly, BLAST search of DNA sequences of interest against EST database at NCBI was performed.8
The source libraries of ESTs homologous to GOI allow making inferences on the respective genes tissue distribution. Thereby, genes highly homologous to EST from testis- or tumor-derived libraries, but not to EST from nontesticular normal tissues, except placenta and fetal tissues, were identified.
RNA Isolation and RT-PCR.
Total cellular RNA was extracted from frozen tissue specimens using guanidine isothiocyanate. Four µg of this RNA was primed with a dT18 oligonucleotide and reverse-transcribed with Superscript II (Invitrogen) according to the manufacturers instructions. Integrity of the obtained cDNA was tested by amplification of p53 transcripts in a 30 cycle PCR (sense, 5'-CGTGAGCGCTTCGAGATGTTCCG-3'; antisense, 5'-CCTAACCAGCTGCCCAACTGTAG-3'; annealing temperature 67°C).
For all GOI, individual PCR assays were designed for specific amplification from first-strand cDNA stocks and are listed in supporting Table 1
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For PCR analysis of individual gene transcripts, 0.5 µl of first-strand cDNA were amplified with transcript-specific oligonucleotides (Invitrogen) using 1 unit of HotStarTaq DNA Polymerase (Qiagen) in a 30-µl reaction (after 15-min activation at 95°C, 35 cycles of PCR with 1 min at 94°C, 1 min at the respective annealing temperature, 2 min at 72°C, and a final elongation step at 72°C for 6 min). In each experiment, a template-free negative control and testis as positive control were included.
Quantitation by Real-Time PCR.
Real-time quantitative analysis for LDHC expression was performed using the ABI Prism 7700 Sequence Detection System instrument and software (Applied Biosystems; Ref. 17
). Intron-spanning primers (sense, 5'-GGTGTCACTTCTGTGCCTTCCT-3'; antisense, 5'-CGGCACCAGTTCCAACAATAG-3') and TaqMan probe (probe, 5'-CAAAGGTTCTCCAAATGT-3') were designed with Primer Express software (Applied Biosystems). The PCR assay was designed to coamplify all splice-variants identified with a primer/probe set spanning the junction between exons 1 and 2.
cDNA was generated from 10 µg of total RNA using the High Capacity cDNA Archive Kit (Applied Biosystems) according to the manufacturers instructions. PCR was performed in duplicate with TaqMan Universal PCR Master Mix (Applied Biosystems) using 5 µl of diluted cDNA and gene-specific forward and reverse primers (300 nM) and probe (250 nM; 35 cycles of PCR with 15 s denaturation at 95°C and 1 min at 60°C for annealing/extension). Expression of 18S rRNA in these cDNAs was assessed using the TaqMan RNase Control Reagents (Applied Biosystems) consisting of 18S rRNA specific primers and TaqMan probe. The relative expression level of LDHC transcripts was computed with respect to the internal standard, 18S rRNA, to normalize for variances in the quality of RNA and the amount of input cDNA. The quantity of LDHC transcripts in tumor samples relative to normal tissues was assessed using 
CT calculation (Applied Biosystems).
Analysis of LDHC Transcripts.
Amplification was performed from first-strand cDNA derived from a melanoma specimen (Fig. 2B
, lane 25) scoring as LDHC positive upon typing with primers listed in supporting Table 1
. Primers (sense, 5'-TAGCGCCTCAACTGTCGTTGG-3') and (antisense, 5'-CAACATCTGAGACACCATTCC-3') used for amplification cover nearly the entire ORF. Amplification products were cloned in pCR2.1 after excision and purification from gel and sequenced. Transcript sequences obtained were aligned to the mRNA sequence of LDHC (NM_002301/NM_017448) and compared with the genomic clones for dissection of the pattern of exon assembly. ORF finder at the NCBI9
was used for determination of ORFs in splice variants and CLUSTALW software for alignments.
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| RESULTS |
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Distribution of Expression Analyzed by RT-PCR.
Sixty-seven GOI appeared testis specific by eNorthern in the sense that matching ESTs derived from nontesticular normal tissues were not found. They were subjected to a two-step analysis by RT-PCR. First, a panel of multiple normal tissue RNA samples (spleen, thymus, mammary gland, liver, ovary, prostate, lymph node, uterus, kidney, thyroid, small intestine, colon, adrenal gland, esophagus, lung, skin, activated peripheral blood mononuclear cells, brain, and testis) was screened with primer sets specific for the respective GOI to reassess testis specificity experimentally. Forty-six genes were detected in normal tissues (supporting Table 2, column C). Several of these gene products like SPAG4, SPAG8, and CCT6B were found to be expressed ubiquitously or in multiple different tissues. Other genes were selectively expressed in single tissues, e.g., TBX22 in testis and thyroid. All these transcripts were excluded from additional analysis because of their expression in normal nontesticular cells.
In a second step, the remaining 21 transcripts without expression in nontesticular normal tissues were additionally analyzed in a panel of cDNAs from different tumor samples (17 lung cancer, 20 breast cancer, 20 colon cancer, 16 melanoma, 8 prostate cancer, 7 renal cell carcinoma, 7 ovarian cancer, 6 cervical cancer, and 4 thyroid cancer) and 14 cancer cell lines (8 melanoma and 6 lung cancer).
Fifteen GOI were not detected in the panel of tumors and therefore classified as strictly testis specific (supporting Table 2, column D), whereas 6 GOI qualified as novel CT genes in that they were detected in various frequencies in different tumor entities (supporting Table 2, column E). All these GOI are not detectable in the normal nontesticular tissues tested with the exception of TPX-1, showing a very faint and inconsistent signal in endometrium (Fig. 2A)
. In tumors expression levels seemed to be heterogeneous (Fig. 2B)
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Characterization of Novel CT Genes.
The group of novel CT genes includes LDHC, a testis-specific lactate dehydrogenase isoenzyme (19)
, TPX-1, an integral protein of the outer dense fibers and the acrosome of spermatids (20)
, ADAM2, also known as the metalloproteinase member Fertilin ß (21)
, MORC, the human orthologue of the microrchidia gene (22)
, SGY-1 (soggy-1), a secreted protein related to the Dickkopf protein family suppressing Wnt-mediated effects during early embryonic development (23)
, and SPO11, a meiosis-specific protein binding covalently to DNA double-strand breaks (Ref. 24
; Table 1
, Fig. 2, A and B
). From these, LDHC was detected in virtually all of the tumor types tested, with highest expression frequencies in lung cancer (8 of 17, 47%), melanoma (7 of 16, 44%), and renal cell cancer (4 of 7).
TPX-1 was expressed for example in prostate cancer (3 of 8) and breast cancer (3 of 20, 15%) and Soggy-1 in melanoma (4 of 16, 25%), lung cancer (2 of 17, 12%), breast cancer (4 of 20, 20%), as well as others (Table 1)
. ADAM2, SPO11, and MORC were detected less frequently, being identified in 4, 5 and 9, respectively, of the total of 119 tumor specimen and cell lines investigated per gene. During preparation of the manuscript, we became aware of a paper reporting expression of ADAM2 in some cases of renal cell carcinoma (25)
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Detection and Characterization of New Splice Variants of LDHC.
The gene with the highest prevalence of aberrant expression in neoplasms investigated was LDHC. We had taken care that primers were specific for LDHC without cross-amplification of the related ubiquitously expressed isoenzymes LDHA and LDHB. These oligonucleotides coamplified LDHC variant 1 (NM_002301) and variant 2 (NM_017448), both reported to be expressed specifically in testis. They differ in their 5' untranslated region because of an alternative splicing of exon 1 (Fig. 3)
. Both variants give rise to the same protein of 332 amino acids. The expected size of the PCR amplification product was 824 bp. Unexpectedly, exclusively in tumor samples at least three additional amplification bands of smaller size were regularly observed (Fig. 2)
, indicative of the existence of additional splice variants to which we refer as splice variants 3, 4, 5, and 6. To obtain the full lengths of these variants, we amplified the entire ORF from tumor-derived first-strand cDNA. Alignment of the respective products with prototype ORF of LDHC variant 1 and variant 2 and the genomic clones from chromosome 11 showed either pending of exon 3 (variant 3) or omission of both exon 3 and 4 (variant 4), of exons 3, 6 and 7 (variant 5) or of exon 7 only (variant 6; Fig. 3
). The cDNA sequences of the new variants were deposited in GenBank with accession numbers AF401094, AF401095, AF401096 and AF401097.10
As pointed out, splice variants 3, 4, 5, and 6 were exclusively detected in cancer but not in testicular tissue. The alternative splicing events in cancer cells affect the reading frames and give rise to seven new putative ORFs (Fig. 3
, supporting Fig. 1
). In addition to the previously described start site, downstream initiation in exon 4 may occur, resulting in an ORF that is a NH2-terminally truncated form of the prototype LDHC (ORF 2 of variant 3) or is additionally truncated as well as altered at its COOH terminus (ORF 3 of variant 5). Initiation from a potential start codon in exon 5 (ORF 2 of variant 5) and one in exon 6 (ORF 2 of variant 4) may also result from the depicted splicing events, leading to short proteins missing large parts of the NH2 terminus.
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Of these new putative polypeptides, ORF 2 of variant 3, ORF 3 of variant 5, and ORF 6 (variant 6) bear the catalytic L-lactate dehydrogenase domain for NAD-dependent metabolization of lactate to pyruvate, representing the last step of anaerobic glycolysis (Fig. 3
, supporting Fig. 1
). Additional analysis using the TMpred and PSORT II algorithm predicted that the putative proteins translated from alternative ORFs might differ in their subcellular localization. Future studies have to dissect whether the predicted proteins indeed are translated and do result in altered structural and enzymatic properties.
Quantification of LDHC Transcript Levels.
For comparative quantification of expression levels, a real-time quantitative RT-PCR assay was designed to coamplify all LDHC variants. Amplification of LDHC was performed in a duplex PCR together with 18S rRNA as reference. Because all normal tissues tested, except testis and unexpectedly ovary, displayed undetectable levels of LDHC, their modal was used as calibrator.
Real-time PCR results correlated with findings in RT-PCR and confirmed significant expression of LDHC transcript in tumors (Fig. 4)
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| DISCUSSION |
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At least two of the LDHC variants expressed in cancer encode previously described fully active molecules. Our report is therefore the first description of a lactate dehydrogenase activity selectively expressed in tumor but not normal somatic cells. Lactate dehydrogenase catalyzes the interconversion of lactate and pyruvate in the glycolytic pathway. A number of studies have dealt with the tissue specificity and enzymatic properties of the lactate dehydrogenase isoenzymes (31, 32, 33) , which are encoded by three different genes and have distinct physicochemical, enzymatic, and immunological properties. The LDHA (m-chain) and LDHB (h-chain) gene products combine in vivo to give rise to five forms of tetrameric isoenzymes in many somatic tissues (LDH1-LDH5). Despite the widespread use of serum lactate dehydrogenase activity as a prognostic tumor marker (34) , the contribution of the individual isoenzymes to this has never been clearly dissected. The homotetrameric LDHC isoenzyme has never been considered as being involved because of its restriction to spermatogenic cells (35) .
LDHC is generally more sensitive to pyruvate inhibition and less sensitive to lactate than the other isoenzymes (36) . This adaptation seems to be physiologically useful because lactate concentrations in both the male and female reproductive tract fluids are high. Furthermore, spermatids prefer lactate as an energy source over glucose, fructose, and pyruvate (37) . The preferred metabolism of lactate by LDHC provides pyruvate as the starting substrate for the citric acid cycle. Accordingly, spermatids use the citric acid cycle as the major source for energy production (38 , 39) .
On the other hand, for more than seven decades it is known that a variety of human and animal tumor cells have an increased rate of glycolysis, resulting in the excessive production of lactic acid from glucose. This so-called Warburg effect was a subject of intense investigation, yet its molecular basis is not fully understood.
One of the unanswered questions is as to why some of the energy demand is satisfied by aerobic glycolysis, rather than by mitochondrial oxidative phosphorylation. Besides mitochondrial deficiency in tumors, overexpression of key glycolcytic enzymes has been suggested as underlying mechanism. In this regard, the substrate preferences of LDHC, which is not inhibited even by higher concentrations of lactate, may be beneficial for the metabolism and survival of tumor cells providing a metabolic rescue pathway by using lactate for ATP delivery.
In this study, we also tried to resolve the mechanism of LDHC activation in cancer. It has previously been shown that germ cell-specific genes may escape transcriptional repression in adult somatic tissues in the course of malignant transformation by promotor demethylation (40) . However, by experimental treatment of normal and tumor cells with the genome demethylating agent DAC, we could not induce LDHC expression. Recently, a widespread system of oxygen-related gene expression, based on the activation of the transcription factor HIF-1, has been defined (41 , 42) . Intriguingly, it has been revealed that a short consensus motif in the promotor region of genes for glycolytic enzymes, e.g., the isoenzyme LDHA, could provide the basis for coordinated up-regulation of the pathway upon hypoxic conditions. Although the consensus motif is present in the LDHC promotor region, treatment of cell lines with desferrioxamine, a strong inductor of HIF-1, did not result in expression of LDHC. Activation mechanisms of LDHC might be similarly sophisticated as described for its isoenzyme LDHA for which recent studies unraveled transactivation by c-Myc (43) . The availability of LDHC-specific monoclonal antibodies and studies with ectopically expressed LDHC will provide the basis to dissect whether LDHC has a biological significance in the specific metabolic processes observed in tumors.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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1 Supported, in part, by the Sonderforschungsbereich 432, by Deutsche Forschungsgemeinschaft Grants TU 115/1-2 (to Ö. T.) and SA 776/2-1 (to U. S.), and the 5th Framework Program of the European Commission (EUCIP). ![]()
2 Supplementary data for this article is available at Cancer Research Online (http://cancerres.aacrjournals.org). ![]()
3 To whom requests for reprints should be addressed, at University Mainz, 3rd Department of Internal Medicine, Obere Zahlbacher Street 63, 55131 Mainz, Germany. ![]()
4 The abbreviations used are: CT, cancer-testis; NCBI, National Center for Biotechnology Information; RT-PCR, reverse transcription-PCR; LDHC, lactate dehydrogenase C; DAC, 5'-Aza-2'-deoxycytidine; DFO, desferrioxamine mesylate; eNorthern, electronic Northern; GOI, gene of interest; ORF, open reading frame; HIF-1, hypoxia inducible factor 1; EST, expressed sequence tag. ![]()
5 Internet address: www.ncbi.nlm.nih.gov. ![]()
6 Internet address: ncbi.nlm.nih.gov/blast. ![]()
7 Internet address: bioinfo.weizmann.ac.il/cards. ![]()
8 Internet address: www.ncbi.nlm.nih.gov/BLAST. ![]()
9 Internet address: www.ncbi.nlm.nih.gov/gorf/gorf.html. ![]()
10 Data deposition: GenBank entries AF401094, AF401095, AF401096, and AF401097. ![]()
Received 5/16/02. Accepted 9/19/02.
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