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[Cancer Research 62, 708-714, February 1, 2002]
© 2002 American Association for Cancer Research


Carcinogenesis

Identification of Molecular Targets Associated with Selenium-induced Growth Inhibition in Human Breast Cells Using cDNA Microarrays1

Yan Dong, Howard E. Ganther, Carleton Stewart and Clement Ip2

Department of Experimental Pathology, Roswell Park Cancer Institute, Buffalo, New York 14263 [Y. D., C. S., C. I.], and Department of Nutritional Sciences, University of Wisconsin, Madison, Wisconsin 53706 [H. E. G.]


    ABSTRACT
 Top
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Past research indicated that methylseleninic acid (MSA) is an excellent tool for investigating the cancer chemopreventive action of selenium in vitro. The present study was designed to examine the cellular and molecular effects of MSA in the MCF10AT1 and MCF10AT3B premalignant human breast cells. After exposure to MSA, both cell lines exhibited a dose- and time-dependent growth-inhibitory response as determined by the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) cell proliferation assay. Further characterization of cellular and molecular changes was carried out only with the MCF10AT1 cells. Flow cytometry analysis showed that MSA blocked cell cycle progression at the G0-G1 phase. Induction of apoptosis was also observed with the use of either the terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) or the annexin V binding method. cDNA microarray analyses with cell cycle- and apoptosis-targeted arrays were then applied to profile the gene expression changes mediating these two cellular events. The analyses were conducted at 6 and 12 h of MSA treatment using synchronized cells. The expression signals of 30 genes were found to be significantly altered by MSA. These genes fall into three categories: cell cycle checkpoint controllers (e.g., cyclins, cdcs, cdks, E2F family proteins, and serine/threonine kinases), apoptosis regulatory genes (e.g., Apo-3, c-jun, and cdk5/cyclin D1), and signaling molecules [e.g., mitogen-activated protein (MAP)/extracellular signal-regulated protein kinase (ERK) and phosphatidylinositol 3'-kinase (PI3k) cascade genes]. The expression changes of 15 genes were selected for verification by Western or semiquantitative reverse transcription-PCR analyses. An agreement rate of 60% (9 of 15) was obtained from these confirmation experiments. On the basis of the above findings, tentative signaling pathways mediating the outcome of selenium-induced cell cycle arrest and apoptosis are proposed. The present study thus demonstrated the feasibility of applying cDNA microarray technology in delineating the mechanisms of the action of selenium and in pinpointing molecular targets as potential biomarkers for evaluating the efficacy of selenium intervention.


    INTRODUCTION
 Top
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
A milestone in selenium and cancer prevention research is the finding by Clark et al. (1) that selenized yeast supplementation was capable of significantly reducing the incidence of prostate, lung, and colon cancers. The study was unable to show an effect on breast cancer. One reason might be attributable to the fact that there were too few breast cancer cases in this cohort to provide sufficient statistical power for a conclusive analysis of the data. Interestingly, the bulk of the experimental evidence on selenium chemoprevention was derived with the use of mammary tumor models. Our collaborative group developed a novel selenium compound, MSC3 [CH3-Se-CH2-CH(NH2)-COOH], which is more effective than selenized yeast or selenomethionine (a component of selenized yeast) in suppressing chemically induced mammary carcinogenesis in rats (2, 3, 4) . Despite the recent attempts to characterize surrogate markers that are associated with MSC-mediated reduction in cancer risk (5 , 6) , the precise molecular targets underlying the action of MSC have not been defined. Determining the signaling mechanism for the chemopreventive activity of MSC in breast cancer is a key issue in opening new opportunities for disease intervention.

There is one major problem with performing in vitro studies using MSC. A ß-lyase-mediated conversion of MSC to methylselenol (CH3SeH) is required for this agent to express its anticancer activity (7) . Because ß-lyase is present in abundance in the liver and kidney, animals have an ample capacity to metabolize MSC systemically. Breast cells, on the other hand, have a low ß-lyase activity. Consequently, concentrations of MSC far above physiological levels are necessary to produce growth inhibition in cultured breast cells. MSA (CH3SeO2H) was developed specifically for in vitro studies because it obviates the need for ß-lyase to generate a monomethylated metabolite (8) . Once taken up by cells, MSA is easily reduced to CH3SeH through nonenzymatic and enzymatic processes involving glutathione and NADPH (8 , 9) . Our previous research with mouse mammary premalignant cell lines showed that 5 µM MSA was able to induce a 50% growth inhibition, whereas 50 µM of MSC produced only a marginal effect (8) . Contrary to the in vitro data, MSA and MSC have equal chemopreventive efficacy in vivo (8) , and they behave similarly in modulating a panel of cell cycle- and apoptosis-regulatory biomarkers in premalignant lesions of the rat mammary gland (10) . Thus, these two reagents are interchangeable when ß-lyase is not a limiting factor. However, because of the high sensitivity of cultured epithelial cells to MSA, we believe that MSA is an excellent agent for molecular mechanistic studies in vitro.

To date, MSA has been evaluated only in rodent mammary cells. It is critical to find out whether human cells respond equally well to a monomethylated selenium compound such as MSA. In this study, we examined the growth inhibitory effect of MSA on two premalignant human breast cell lines. Our results indicated that these cells are exquisitely sensitive to MSA with respect to growth inhibition, which is achieved mainly by G0-G1 arrest coupled with an induction of apoptosis. We also made use of the cDNA microarray technology to gain a global view of the pool of genes that might play an important role in growth inhibition by selenium. A set of 30 potential selenium-responsive genes was defined by this method. As an epilogue, these genes are then integrated into a schematic diorama of signaling pathways that provide the supportive framework for understanding the molecular mechanism of selenium chemoprevention.


    MATERIALS AND METHODS
 Top
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Selenium Reagents and Cell Lines.
MSA was synthesized as described previously (8) . The premalignant human breast epithelial cells, MCF10AT1 and MCF10AT3B (11) , were obtained from the Karmanos Cancer Institute (Detroit, MI). These cells were cultured in DMEM/F12 (1:1) supplemented with 5% equine serum, 100 units/ml penicillin, 100 µg/ml streptomycin, 0.5 µg/ml fungizone, 10 µg/ml insulin, 20 ng/ml epidermal growth factor, 0.5 µg/ml hydrocortisone, and 100 ng/ml cholera enterotoxin, and maintained in an atmosphere of 5% CO2 in a 37°C humidified incubator. The MCF10AT1 cells were derived from MCF10A cells by transfection with a mutated Ha-ras (11) . The 10A cells do not form persistent xenografts in immunodeficient mice; the transplant usually disappears from the injection site after 3–4 weeks. On the other hand, the AT1 cells will initially form normal ductal structures on transplantation. Over a period of time, these ducts progress through sequential stages of proliferative breast disease including atypical ductal hyperplasia, ductal carcinoma in situ, and invasive carcinoma. The MCF10AT3B cells were derived from a third generation transplant of 10AT1 cells. With each succeeding passage, there was an increase in the percentage of mice developing proliferative lesions. Therefore, the 10AT3B cells are considered pathologically more advanced than the 10AT1 cells.

MTT Cell Proliferation Assay.
The assay, based on the conversion of the yellow tetrazolium salt MTT to purple formazan crystals by metabolically active cells (12) , provides a quantitative determination of viable cells. As part of the design to evaluate the activity of MSA in modulating cell growth, we also compared it with MSC (Sigma Chemical Co., St. Louis, MO). Cells were seeded in 24-well plates at a density designed to reach 70–80% confluency at the time of assay. At 48 h after seeding, cells were treated with various concentrations of MSC or MSA in triplicate. After 24, 48, or 72 h of treatment, 200 µl of MTT was added to each well of cells, and the plate was incubated for 4 h at 37°C. The medium was removed, and the MTT crystals were solubilized in isopropanol and subjected to centrifugation to pellet the cellular debris. Spectrophotometric absorbance of each sample was measured at 570 nm using a Spectra Microplate Reader (SLT, Australia).

Cell Cycle Analysis.
MCF10AT1 cells were plated at a density of 3000 cells/cm2 in T75 culture flasks and allowed to grow for 48 h to reach 50–60% confluency. To achieve synchronization, cells were starved in serum-free and growth factor-free medium for 48 h. On returning to regular growth medium for 6 h, cells were exposed to 5 µM MSA. After treatment for 6, 12, or 24 h, cells were trypsinized, washed in PBS, and fixed overnight in 70% ethanol at 4°C. At the time of harvest, the cultures were 70–90% confluent, although they were maintained for various lengths of time. The ethanol solution was subsequently removed after centrifugation, and cells were resuspended in a buffer containing 10 mM Tris (pH 7.5), 125 mM sucrose, 2.5 mM MgCl2, 0.185% NP40, 0.02 mg/ml RNase A, 0.05% sodium citrate, and 25 µg/ml PI. After incubation on ice for 1 h, cells were subjected to DNA content analysis using a FACScan cytometer (Becton Dickinson).

TUNEL Detection of Apoptosis.
MCF10AT1 cells were plated at a density of 4000 cells/cm2 in Lab-Tek chamber slides suitable for tissue culture (Nalge Nunc, Rochester, NY). At 48 h after seeding, cells were exposed to 5 or 10 µM MSA for 18, 21, or 24 h. Cells were then fixed in 1% paraformaldehyde, and apoptosis was detected by the TUNEL method using the ApopTag Peroxidase in Situ Apoptosis Detection kit (Intergen, Purchase, NY) according to the manufacturer’s instructions. Color pictures were taken with a camera mounted on top of a microscope under a x40 objective. All hard-copy images were scored by an observer blinded to the identity of the sample to avoid bias. The quantification of apoptotic cells was calculated as a percentage of the total cells evaluated (>200 cells/sample).

Quantitation of Apoptosis by Flow Cytometry.
MCF10AT1 cells were plated at a density of 4000 cells/cm2 in T175 culture flasks. At 48 h after seeding, cells were exposed to 5 µM MSA for 18, 21, or 24 h. Adherent cells harvested by mild trypsinization were pooled together with detached cells. Cells were stained with biotin-conjugated Annexin V, FITC-conjugated streptavidin, and PI using the Annexin V-Biotin Apoptosis Detection kit (Oncogene Research Products, Boston, MA) as per manufacturer’s protocol. Apoptotic cells were subsequently counted by flow cytometry, and the data were analyzed with the WinList software (Variety Software House, Topsham, ME).

cDNA Microarray Analysis.
MCF10AT1 cells were plated at a density of 4000 cells/cm2 in 15-cm culture dishes. Synchronization was achieved as described above. Again, the cultures for the microarray analysis were grown to 80–90% confluency at the time of harvest. After exposure to 5 µM MSA for 6 or 12 h, total RNA and protein were isolated using TRIzol (Life Technologies, Inc.). 32P-cDNA probes were generated from total RNA using the Atlas Pure Total RNA Labeling system (Clontech, Palo Alto, CA) as per manufacturer’s protocol. The probes synthesized from the treatment samples and their corresponding controls were hybridized side-by-side to two identical Atlas Human Cell Cycle Arrays or Apoptosis Arrays (Clontech, Palo Alto, CA). After overnight hybridization and a high-stringency wash, the arrays were scanned by a Storm PhosphorImager (Molecular Dynamics, Sunnyvale, CA) after a 3-day exposure. The two array images were analyzed and compared using the Clontech AtlasImage 1.5 software as reported previously (13) . The entire synchronization and treatment experiment was repeated, and the total RNA collected from the replicate was subjected independently to microarray analysis. Only those genes that were modulated in both experiments were considered to minimize intervariation errors.

Western Blot Analysis.
Western blot analysis was performed as described previously (14) using the TRIzol isolated protein. Briefly, ~20 µg of protein was resolved over 10–15% SDS/PAGE and transferred to polyvinylidene fluoride membrane. The blot was blocked in blocking buffer [5% nonfat dry milk, 10 mM Tris (pH 7.5), 10 mM NaCl, and 0.1% Tween 20] overnight at 4°C, incubated with the primary antibody at 37°C for 1 h, followed by incubation with an antimouse or antirabbit horseradish peroxidase-conjugated secondary antibody (Bio-Rad, Hercules, CA) at 37°C for 30 min. Individual proteins were visualized by an enhanced chemiluminescence kit obtained from Amersham Pharmacia Biotech (Piscataway, NJ). Immunoreactive bands were quantitated by volume densitometry using the ImageQuant software (Molecular Dynamics, Sunnyvale, CA), and normalized to actin. The following monoclonal antibodies were used in this study (source): anti-actin (Sigma Chemical Co., St. Louis, MO); anti-cdc6, DP1, and c-jun (Oncogene Research, Boston, MA); anti-cyclin A, cyclin D1, cdc25A, and cdk5 (NeoMarkers, Fremont, CA); anti-cdc2, cyclin B1, and proliferating cell nuclear antigen (Santa Cruz Biotechnology, Santa Cruz, CA). Polyclonal antibodies to four other proteins were obtained from Cell Signaling Technology (Beverly, MA): anti-MAPKK1/2, phospho-ATF-2, SAPK/JNK, and phospho-SAPK/JNK.

Semiquantitative RT-PCR.
Total RNA from the TRIzol isolate was treated with RNase-free DNase I (Roche, Indianapolis, IN). After removal of the DNase I, cDNA was reverse transcribed from 1 µg of RNA using an oligo(dT)12–18 primer. The genes of interest (GADD153, E2F1, or E2F5) and the invariant housekeeping gene control, GAPDH, were amplified for 18 cycles from 5% of synthesized cDNA. Primer pairs for each gene spanned at least an intron to distinguish amplified cDNA products from amplified genomic DNA. The following primer pairs were used to amplify GADD153, E2F1, E2F5, and GAPDH respectively: (sense) 5'-GTCATTGCCTTTCTCCTTCG-3'/(antisense) 5'-GCTAGCTGTGCCACTTTCCT-3'; (sense) 5'-TCGCAGATCGTCATCATCTC-3'/(antisense) 5'-CTCAGGGCACAGGAAAACAT-3'; (sense) 5'-GGGCTGCTCACTACCAAGTT-3'/(antisense) 5'-GCCACTGTTTTGATGACCTG-3'; (sense) 5'-TCGGAGTCAACGGATTTGGTCG-3'/(antisense) 5'-AACTGTGAGGAGGGGAGATTCAG-3'. At the end of 18 cycles, 5 µl of each PCR reaction were removed, and the rest of the reaction subjected to five more PCR cycles. This step was repeated until 38 cycles of amplification was reached. The 5-µl aliquots removed from each reaction after 18, 23, 28, 33, and 38 cycles were analyzed on a 2% agarose gel, and the intensity of each band was quantitated with AlphaImager 1220 Documentation and Analysis system (Alpha Innotech, San Leandro, CA). An optimal number of PCR cycles that provided a linear range of amplification was determined by plotting the intensity of each band against the number of PCR cycles. The RT-PCR signal obtained with the optimal cycling parameters for each gene was normalized to the one for the GAPDH gene.

Statistical Analysis.
Student’s t test was used to determine the significance between treatments and untreated controls, and P < 0.05 was considered significant.


    RESULTS
 Top
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Sensitivity of Cultured Human Breast Cells to MSA.
The inhibitory effects of MSC and MSA on the accumulation of MCF10AT1 and MCF10AT3B cells were assessed by the MTT assay. As shown in Tables 1Citation and 2Citation , MSA was able to significantly suppress the growth of both cell lines in a time- and dose-dependent manner. The inhibitory response was apparent as early as 24 h of treatment with a concentration range between 2.5 and 10 µM. At 48 h, concentrations of 2.5 and 5 µM MSA were found to reduce the cell number of both cell lines to ~30% and ~12% of the untreated control, respectively. In contrast, a concentration of 200 µM MSC was required to produce at best a very modest decrease in cell number after 72 h. This concentration of MSC was much higher than that required for MSA to produce growth inhibition. We decided to choose the MCF10AT1 cell line for additional studies because we felt that a less pathologically advanced premalignant cell line would be more appropriate for investigating the molecular targets of selenium chemoprevention.


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Table 1 Effect of MSA or MSC on the accumulation of MCF10AT1 cellsa

 

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Table 2 Effect of MSA or MSC on the accumulation of MCF10AT3B cellsa

 
Cell Cycle Arrest at G0-G1 Phase by MSA.
To determine whether decreased cell number accumulation was related to cell cycle arrest by MSA, we proceeded to assess the effect of MSA on cell cycle perturbation by flow cytometry. The data in Fig. 1Citation clearly show a significant block in G0-G1 phase of the cell cycle, especially at 12 h after treatment with 5 µM MSA. The increase in the G0-G1 population was accompanied by a delay of passage of cells to S phase. Synchronized control cells, but not the treated population, moved into S phase. The enhancement in the proportion of G0-G1 cells was most prominent after 12 h of treatment (70 versus 26%); the effect was attenuated after 24 h (56 versus 27%), as cells moved into G2-M and G1 and became more randomized in their progression through the cell cycle.



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Fig. 1. Cell cycle distribution in MCF10AT1 cells treated with MSA. Results are expressed as mean ± SE (n = 3). The increase in G0-G1 phase and the decrease in S phase by MSA at all time points are statistically significant (P < 0.05).

 
Induction of Apoptosis by MSA.
In an attempt to characterize MSA-induced cell death, we performed the TUNEL assay on formalin-fixed MCF10AT1 cells grown on plastic chamber slides. As demonstrated in Fig. 2Citation , a concentration-dependent induction of apoptosis was apparent at 18 h of MSA treatment; this occurred at a time point succeeding the G0-G1 block seen at 12 h. The increase in apoptosis continued at 21 and 24 h. The TUNEL data were confirmed by flow cytometric analysis of cells labeled with annexin V and PI (Fig. 3)Citation . Phosphatidylserine externalization is a characteristic of cells undergoing apoptosis. Annexin V has a strong affinity for phosphatidylserine. Staining cells simultaneously with annexin V and PI allows the resolution of intact cells (double-negative), early apoptotic cells (annexin V-positive and PI-negative), and late apoptotic or necrotic cells (double-positive), which can be located in the lower left, lower right, and upper right quadrants of the cytograms of Fig. 3ACitation , respectively. Because only cells that are annexin V-positive and PI-negative are truly representative of apoptotic cells, the percentage of this cell population was quantitated from four individual experiments and shown in a bar graph form in Fig. 3BCitation . It is clear that MSA was able to induce progressive apoptosis in a time-dependent manner, resulting in a 5-fold increase in the number of apoptotic cells at the 24-h time point. This magnitude of change was comparable with the 4-fold induction detected by the TUNEL assay (Fig. 2)Citation .



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Fig. 2. MSA induction of apoptosis in MCF10AT1 cells as determined by the TUNEL assay. Percentages of apoptotic cells were quantitated from four independent experiments performed in triplicate. Data are presented as means ± SE. *, statistically significant (P < 0.05) versus untreated control.

 


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Fig. 3. Quantitation of apoptotic cells by flow cytometric analysis of MSA-treated MCF10AT1 cells labeled with annexin V and PI. A, cytograms from flow cytometric analysis. Intact cells, early apoptotic cells, and late apoptotic and necrotic cells are located in the lower left, lower right, and upper right quadrants of the cytograms, respectively. B, percentages of early apoptotic cells as a function of time after MSA treatment. Data are presented as means ± SE (n = 4). The induction of apoptosis is statistically significant (P < 0.05) and is time dependent.

 
Profiling of MSA-responsive Genes by cDNA Microarray Analysis.
Because the inhibitory effect of MSA was achieved mainly by G0-G1 arrest coupled to an enhancement of apoptosis, we focused our expression profiling study with the use of two arrays from Clontech: the Atlas Human Cell Cycle Array (111 genes) and the Apoptosis Array (205 genes). It should be noted that there is about 40% overlap between the two arrays. The array analysis was conducted at 6 and 12 h post-MSA, before cells were committed to G0-G1 arrest and apoptosis, respectively, to capture the genes that might be responsible for initiating these two cellular events. For each time point, two preparations of RNA samples were independently subjected to array hybridization. Genes with a treatment:control-signal-ratio of >=2 or <=0.5 in expression level in two independent experiments were scored as significant and are reported in Table 3Citation . Of the 30 genes identified, 22 were significantly repressed and 7 significantly induced at either or both time points. Cyclin D1 was the only gene that was repressed at the early time point but induced at the later time point.


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Table 3 Modulation of gene expression by MSA in MCF10AT cellsa

 
We categorized the genes into three groups according to their functions: cell cycle controllers, apoptosis switches, and signaling molecules. Of the 18 cell cycle regulatory genes, 8 were modulated only at the 6-h time point, 5 only at the 12-h time point, and the remaining 5 at both time points. Altered expression of the genes detected at the 6-h time point might mediate the blockade of G1-S phase transition by MSA, whereas the gene expression changes at both the 6-h and 12-h time points might be involved in triggering as well as maintaining G0-G1 arrest and in signaling the prelude to apoptosis. On the other hand, the majority of the genes down-regulated at only the 12-h time point are G2-M checkpoint regulators. These changes may represent a bystander effect of G0-G1 arrest. It is of interest to note that all apoptosis-regulatory genes and signaling molecules in the cell survival pathway were modulated not until after 12 h of MSA treatment, a finding that is consistent with the time course of apoptosis induction. On the surface, the up-regulation of insulin-like growth factor I (a growth stimulatory factor) and bcl2A1 (an antiapoptotic member of the bcl-2 family) appeared to be in conflict with the growth-inhibitory effect of MSA. It is possible that the spikes were transient in nature and that these genes could be depressed beyond the 12-h time point, when apoptosis became more pervasive.

Our next step was to confirm the changes in expression of a subset of 15 genes by Western blot (if the antibody were available) or by semiquantitative RT-PCR analyses. This subset of genes was chosen based on their key roles in regulating cell proliferation and programmed cell death. We examined 12 genes by Western blots (cyclin A, cyclin B1, cyclin D1, cdc2, cdc6, cdc25A, cdk5, c-jun, DP1, JNK2, MAPKK1, and PCNA) and three genes by semiquantitative RT-PCR (GADD153, E2F1, and E2F5). We were able to verify eight by Western analysis and one (GADD153) by RT-PCR. This represents a success rate of 60% (9 out of a total of 15). The Western blot and RT-PCR results are shown in Fig. 4Citation and 5Citation , respectively. The lack of complete concordance could be attributable to either false positive signals of the array data or the discrepancy between transcript and protein expression. There were two other noteworthy observations. First, we found a decreased level of c-jun protein at the 6-h time point, but an up-regulation of c-jun expression detected by array and Western analyses at the 12-h time point. Cells lacking c-jun are known to stay in cell cycle arrest and not to undergo apoptosis (15) . It is possible that at the early time point, the repression of c-jun was necessary for initiating MSA-mediated cell cycle arrest, whereas at the later time point when G0-G1 arrest was firmly established, cells produced more c-jun in order for apoptosis to advance. Second, although the array data showed a down-regulation of JNK2, we were unable to detect altered JNK2 expression at the total protein level. Instead, we found that the amount of phosphorylated JNKs was elevated at 12 h post-MSA treatment (Fig. 4)Citation . Clearly, both observations highlighted a fundamental limitation of the array technology in that changes in gene expression that occur posttranscriptionally would not be identifiable.



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Fig. 4. Confirmation of microarray data by Western blot analysis. TRIzol-isolated proteins from MCF10AT1 cells were subjected to immunoblotting using an antibody specific for cyclin A, cyclin B1, cyclin D1, cdc2, cdc25A, cdk5, DP1, c-jun, phospho-JNK, or phospho-ATF2. Signals were normalized to the ones for actin to control for loading variation. The results shown here are representative of that from three similar independent experiments.

 


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Fig. 5. Verification of MSA-induced up-regulation of GADD153 by semiquantitative RT-PCR assay. GADD153 and the invariant housekeeping gene, GAPDH, were amplified from reverse transcribed cDNA samples. A 5-µl aliquot removed from each RT-PCR reaction after the indicated cycles was subjected to gel electrophoresis, and the intensity of each band was quantitated. An optimal number of PCR cycles that provided a linear range of amplification (28 and 23 for GADD153 and GAPDH, respectively) was determined by plotting the intensity of each band against the number of cycles. The RT-PCR signal obtained with the optimal cycling parameters for the GADD153 gene was normalized to the one for the GAPDH gene, and an 8-fold induction by MSA was detected at the 6-h time point. The results shown here are representative of that from two similar independent experiments.

 
With respect to our attempt to confirm the expression changes of three genes (GADD153, E2F1, and E2F5) by RT-PCR, we were successful only with GADD153. The results are shown in Fig. 5Citation . The 28 cycles of the PCR reaction fell within the linear range of amplification as determined by plotting the intensity of each band against the number of PCR cycles. An 8-fold increase was observed at 6 h of MSA treatment, when we normalized the GADD153 RT-PCR signal obtained with 28-cycle of amplification to the one for the GAPDH gene. Therefore, the microarray data and the RT-PCR data for GADD153 are very much consistent with each other (Table 3)Citation . ATF/cAMP-responsive-element-binding protein (CREB) binding site is one of the numerous cis-acting elements in the GADD153 promoter that is known to regulate the expression of this gene (16) . Our Western blot analysis showed a substantial induction of phosphorylated ATF2 at 6 h post-MSA treatment (Fig. 4Citation , last panel). The coordinated up-regulation of GADD153 and the active form of ATF2 suggests a possible role of ATF2 in MSA-induced GADD153 expression.


    DISCUSSION
 Top
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
As far as we are aware, this is the first report in which the activity of MSA was evaluated in human cells, and that microarray analysis was used to obtain information on the molecular mechanism of MSA in cell growth inhibition. Cultured epithelial cells, including breast cells, generally do not respond well to selenoamino acids such as selenomethionine or MSC because of their deficiency in converting these organic selenium compounds to a monomethylated selenium intermediate, which is believed to be the active metabolite in selenium chemoprevention (7 , 8) . To circumvent this lack of responsiveness to selenoamino acids, a stable and yet highly active monomethylated selenium, MSA, was developed for in vitro experiments (8) . In the present study, we evaluated the responsiveness of two premalignant human breast cell lines to MSA, and found that human cells are exquisitely sensitive to this selenium compound. At a concentration of 2.5 µM MSA in the medium (well within physiological range), cell growth was reduced by 70% at 48 h. In contrast, a concentration of 200 µM MSC failed to produce even the slightest hint of growth inhibition after the same period of exposure. The data substantiated our belief that MSA is an ideal selenium compound for mechanistic studies in cultured human breast cells.

In our effort to identify selenium-responsive biomarkers and to understand the signal transduction pathways leading to MSA-induced cell cycle arrest and programmed cell death, we used the cDNA microarray technology to elucidate the changes in gene expression profile. On the basis of the collection of ~200 genes screened by two Clontech arrays, we have identified 30 genes responsive to MSA treatment. Some of these genes are responsible for cell cycle arrest, whereas others are likely to play a role in apoptosis. We further characterized the signal from 15 genes by either Western blots or semiquantitative RT-PCR. We were able to verify the expression changes in 60% of the candidate genes with one or the other of the two methods. Because this is still an emerging technology and the reliability of the array data has not been widely studied and published in the literature, there is little guidance to compare our experience with that of other investigators. Armed with the proper precautions, the cDNA microarray technology can be used judiciously to examine global changes in gene expression as a consequence of a particular intervention.

On the basis of the results obtained from the present study, we propose a number of tentative signaling pathways that could mediate the outcome of MSA-induced cell cycle arrest and apoptosis. As shown in Fig. 6Citation , selenium treatment down-regulates the expression of DP1, which is a dimerization partner of E2F proteins. E2Fs are known to positively regulate the transcription of cdc25A (17) . Thus, the decrease in the formation of E2Fs and DP1 dimers reduces the transcription of cdc25A. The phosphatase activity of cdc25A removes the inhibitory phosphate group from cdc2 (cdk1) and cdk2, allowing them to be activated by cdk-activating kinases, and to bind to cyclin A or B. These latter processes are expected to facilitate cell cycle progression. A deficiency in cdc25A would be expected to block cell cycle transition. In addition, the expressions of cdc2, cyclin A, and cyclin B1 are repressed by selenium, thereby providing an amplified effect on this cascade of events. Selenium also down-regulates cdk4 and its partner, cyclin D1 (at the early time point), both of which are required for G1-S transition. Furthermore, GADD153, which plays an essential role in DNA damage-induced cell cycle arrest and apoptosis (18) , is induced by MSA. It should be noted that MSA does not exert a genotoxic effect on cultured cells (8) . Hence the up-regulation of GADD153 is probably mediated by a novel mechanism involving the activation of ATF2 (16) . In summary, Fig. 6Citation shows that different pathways modulated by selenium all converge to effect a G0-G1 block.



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Fig. 6. Schematic representation of signaling pathways mediating MSA-induced cell cycle arrest (see "Discussion"). The numbers in parentheses indicate the treatment:control-signal ratio detected by array analysis. Up-regulation is denoted by a ratio of >=2, and down-regulation is denoted by a ratio of <=0.5. All of the changes, except the one for cdk4, were confirmed by either Western or semiquantitative RT-PCR assay.

 
Fig. 7Citation represents our hypothesis of the pathways underlying the induction of apoptosis by selenium. At the later time point, selenium increases the expression of cyclin D1 and cdk5; these two proteins have been shown to be associated with an increase in apoptosis (19) . Additionally, another known mediator of apoptosis, c-jun, is also up-regulated by selenium at the 12-h time point. Furthermore, c-jun could be activated through the action of phosphorylated JNKs, of which an induction by selenium was detected by Western blotting (see Fig. 4Citation ). On the other hand, a key player of the survival pathway, AKT2, is down-regulated by selenium. Collectively, the switch-on of pro-apoptosis signals in conjunction with the switch-off of survival signals would produce a more powerful stimulus to programmed cell death.



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Fig. 7. Schematic representation of signaling pathways mediating MSA-induced apoptosis (see "Discussion"). Numbers in parentheses, the treatment:control-signal ratio detected by array analysis. Up-regulation is denoted by a ratio of >=2, and down-regulation is denoted by a ratio of <=0.5. All of the changes, except the one for AKT2, were confirmed by Western analysis.

 
It is, thus, apparent that selenium affects not just one key target, but a multitude of targets. In doing so, the impact of selenium is amplified. The diversity of the molecular responses also makes it difficult for premalignant cells to escape the inhibitory effect of selenium. Some of the molecular targets could potentially be used as biomarkers in future selenium intervention trials. Three candidate biomarkers are prioritized below, based on our data. Among the nine genes of which the expression changes were confirmed by either Western blotting or semiquantitative RT-PCR, GADD153 showed the highest magnitude of change (an 8-fold increase). GADD153 is an inhibitor of CCAAT/enhancer-binding protein (C/EBP) transcription factors (20) and plays an essential role in cell cycle control and apoptosis. Microinjection of GADD153 protein into NIH3T3 cells blocks G1-to-S-phase progression (21) and transient overexpression of GADD153 inhibits the proliferation of several different human cancer cell lines (22) . Additionally, ectopic expression of GADD153 causes myeloblastic leukemia cells to undergo apoptosis spontaneously (23) , and gastric carcinoma cells to undergo apoptosis on treatment with a number of anticancer agents (24) . A previous study by Kaeck et al. (25) also showed that GADD153 was induced by methylselenocyanate (structurally similar to MSA) in a mouse mammary tumor cell line. It is, therefore, possible that GADD153 is critically involved in MSA-mediated breast cancer chemoprevention and could be an appropriate surrogate biomarker in future selenium intervention trials. Cyclin A and cdc25A are two key cell cycle checkpoint controllers. Both were persistently down-regulated by MSA at the two time points, and the changes in mRNA expression were confirmed at the protein level. Their potential involvement in MSA-mediated growth arrest would also suggest a role as biomarkers for selenium intervention. Although the functional significance of these molecular biomarkers in selenium-induced cancer protection needs to be further delineated, we believe that the cDNA microarray technology, when combined with emerging technology such as proteomics, will greatly advance the science of chemoprevention research.


    ACKNOWLEDGMENTS
 
We are grateful to Dorothy Donovan, Rita Pawlak, Tamora Loftus, Cathy Russin, and Janice Hoffmann for their excellent technical assistance.


    FOOTNOTES
 
The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

1 Supported by Grants CA 45164 and CA 27706 from the National Cancer Institute, Roswell Park Cancer Institute Core Grant CA 16056 from the National Cancer Institute, and AACR-Cancer Research Foundation of America Fellowship in Prevention Research. Back

2 To whom requests for reprints should be addressed, at Department of Experimental Pathology, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY 14263. Phone: (716) 845-8875; Fax: (716) 845-8100; E-mail: clement.ip{at}roswellpark.org Back

3 The abbreviations used are: MSA, methylseleninic acid; MSC, methylselenocysteine; TUNEL, terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling; PI, propidium iodide; GAPDH, glyceraldehyde-3-phosphate dehydrogenase; MTT, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide; ATF, activating transcription factor; MAPKK, mitogen-activated protein kinase kinase. Back

Received 9/24/01. Accepted 12/ 3/01.


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 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
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