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Family and a DNA-damaging Agent for Caspases and the Double-stranded RNA-dependent Protein Kinase1
Department of Biochemistry and Immunology, Cellular and Molecular Sciences Group, St Georges Hospital Medical School, Cranmer Terrace, London SW17 0RE [I. W. J., M. B., V. J. T., M. J. C.], and Biochemistry Group, School of Biological Sciences, University of Sussex, Brighton BN1 9QG, United Kingdom [S. M.], United Kingdom
| ABSTRACT |
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(TNF
) and TNF-related apoptosis-inducing ligand inhibit overall translation by a mechanism that requires caspase (but not necessarily caspase-3) activity. This inhibition is associated with the increased phosphorylation of eukaryotic initiation factor (eIF2)
, increased association of eIF4E with the inhibitory eIF4E-binding protein (4E-BP1), and specific cleavages of eIF4B and eIF2
. All of these changes require caspase activity. The cleavage of eIF4GI, which specifically needs caspase-3 activity, is dispensable for the inhibition of translation in MCF-7 cells. Similar experiments with embryonic fibroblasts from control mice and animals defective for expression of the double-stranded RNA-regulated protein kinase (PKR) reveal requirements for both caspase activity and PKR for inhibition of protein synthesis in response to TNF
. In contrast, treatment of cells with the DNA-damaging agent etoposide inhibits protein synthesis equally well in the presence of a pan-specific caspase inhibitor and in the presence or absence of PKR. Surprisingly, the ability of etoposide to cause increased association of eIF4E with 4E-BP1 does require PKR activity. However, our data suggest that neither increased phosphorylation of eIF2
nor increased [eIF4E.4E-BP1] complex formation is essential for the inhibition of overall translation by the DNA-damaging agent. | INTRODUCTION |
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4
(4)
, agonistic Fas antibodies (5)
, DNA-damaging agents (6
, 7)
, or staurosporine (4
, 7)
. Changes in the protein synthetic machinery associated with early stages of apoptosis (reviewed in Ref. 8
) include increased phosphorylation of initiation factor eIF2
(5)
, decreased phosphorylation of 4E-BP1 and increased association of the latter with eIF4E (6
, 7
, 9)
, caspase-mediated cleavages of certain initiation factors (eIF4GI, eIF4GII, eIF4B, the j subunit of eIF3, and the
subunit of eIF2; Refs. 3
and 9, 10, 11, 12
), and specific cleavage of the 28S rRNA component of the larger ribosomal subunit (13)
. However, the signal transduction pathways by which these events are activated and the relative contributions of each of these changes to the overall inhibition of translation remain to be established.
Members of the TNF family, including TNF
, TRAIL, and Fas ligand, inhibit growth and induce programmed cell death in a wide variety of target cells. Association of these ligands with their specific cell surface receptors (14)
initiates a sequence of intracellular events that results in the recruitment of adapter proteins, such as TNF receptor-associated death domain protein and FADD, to form a DISC (15)
. TNF receptor-associated death domain protein and FADD in turn recruit procaspase-8, the proteolytic activation of which leads to the activation of effector caspases (14
, 16) and is essential for subsequent apoptosis (17
, 18)
.
In contrast to cytokine-mediated apoptosis, ionizing radiation and DNA-damaging agents, such as etoposide, exert their effects through the activation of downstream factors, such as the DNA-dependent protein kinase; the protein kinases c-Abl, ATM, and ATR; and the tumor suppressor protein p53 (19 , 20) . DNA damage-dependent or p53-induced apoptosis may also involve TNF family receptors and/or components of the DISC complex (21, 22, 23) , as well as changes in mitochondrial function, and the patterns of caspase activation and protein cleavages are very similar to those seen after exposure of cells to members of the TNF family (21) .
The requirement for caspase activation in the process of cell death varies with different stimuli, and caspase-independent mechanisms can also cause loss of viability (24, 25, 26) . Consistent with this, the inhibition of protein synthesis resulting from exposure of cells to inducers of apoptosis is prevented by caspase inhibitors in some cases but not others (8) .
Recent studies have identified some of the signaling pathways by which protein synthesis may be regulated by cellular stresses and conditions that induce cell death. The cleavage of initiation factor eIF4GI shows a specific requirement for caspase-3 (4)
. In addition, important roles have been suggested for the protein kinase PKR, which phosphorylates polypeptide chain initiation factor eIF2
(27
, 28)
, for the rapamycin-sensitive protein kinase mTOR, which is involved in the phosphorylation of the 4E-BPs (29)
, and for stress-activated protein kinases, which activate the phosphorylation of eIF4E itself (29)
. Previous work has shown that cells that are deficient in PKR expression or that contain a dominant-negative form of PKR are more resistant than control cells to the proapoptotic effects of TNF
(30, 31, 32)
. However, the regulation of protein synthesis itself has not been investigated previously in these systems. Changes in the activity of mTOR rather than PKR have been suggested to be important for the inhibition of translation in response to DNA-damaging agents (6)
. Thus, although we know a great deal both about the mechanisms of induction of apoptosis and the changes in the translational machinery associated with the early stages of programmed cell death, little is understood concerning how the two series of events are linked mechanistically. With this in mind, we have begun to dissect the requirements for the various events associated with translational down-regulation in cells induced to undergo apoptosis by a variety of treatments. We have used genetically well-characterized MCF-7 breast cancer cell lines (33)
and MEFs (34)
to determine the roles of caspases and PKR in the response of protein synthesis to treatment of cells with TNF
, TRAIL, and etoposide.
| MATERIALS AND METHODS |
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and rabbit antisera to eIF4G (raised against the COOH-terminal fragment of eIF4GI expressed in bacteria), eIF4E (raised against a COOH-terminal peptide), and phosphorylated eIF2
were as described previously (3
, 5)
. Immobilon polyvinylidene difluoride was from Millipore, and human TNF
and TRAIL were from PeproTech EC Ltd. Etoposide and z-VAD.FMK were from Calbiochem, m7GTP-Sepharose was from Pharmacia-LKB, and [35S]methionine was from New England Nuclear.
Tissue Culture and Treatment with Inducers of Apoptosis.
MCF-7 cells (caspase-3 deficient) and MCF-7.3.28 cells (stably transfected to express caspase-3; Ref. 33
) were kindly provided by Dr. R. Jänicke (University of Singapore) and cultured as described previously (4
, 33
, 35)
. MEFs from PKR knockout (PKR-/-) and control (PKR+/+) mice were a gift from Professor C. Weissmann and were maintained in DMEM with 10% FCS and 0.1 mM 2-mercaptoethanol (34)
. The cell lines were treated with TNF
, TRAIL, or etoposide at concentrations of 5 ng/ml, 0.5 µg/ml, and 100 µg/ml, respectively. Cell viability was determined by trypan blue exclusion.
Measurement of Protein Synthesis.
Overall protein synthesis in intact cells was measured by the incorporation of [35S]methionine into trichloroacetic acid-insoluble material. After pulse labeling with 10 µCi/ml of the radioactive amino acid (in methionine-free DMEM with 10% dialyzed FCS), cells were washed in cold PBS and dissolved in 0.3 M NaOH. The protein content was determined, and total proteins were then precipitated, washed, and analyzed by scintillation counting. Rates of protein synthesis were calculated as counts per min of radioactivity incorporated per µg of total protein.
Preparation of Cell Extracts and Analysis by Immunoblotting.
Approximately 23 x 106 cells/64-cm2 dish were harvested. The medium containing any free cells was retained, and monolayers were scraped into this with 20 ml of PBS. The cells were washed in PBS twice by centrifugation in the cold and resuspended in 200 µl of buffer A [50 mM 3-(N-morpholino)propanesulphonic acid (pH 7.4), 50 mM NaCl, 2 mM EDTA, 50 mM ß-glycerophosphate, 1 mM microcystin, 2 mM benzamidine, 2 mM Na vanadate, 5 mM p-nitrophenylphosphate, 1 mM phenylmethylsulfonyl fluoride, 0.1 mM GTP, 50 mM Na fluoride, and 7 mM 2-mercaptoethanol]. Cells were lysed by adding NP40 and Triton X-100 to final concentrations of 1.2 and 2.4% (volume for volume), respectively, and centrifuged at 10,000 x g for 10 min at 4°C. For the isolation of eIF4E, cell extracts of equal protein concentration were subjected to m7GTP-Sepharose chromatography as described previously (3
, 9)
.
Samples containing equal amounts of protein were subjected to electrophoresis on SDS polyacrylamide gels, and the proteins were analyzed by immunoblotting using alkaline phosphatase-linked secondary antibodies with nitroblue tetrazolium as substrate (3
, 9)
. Blots of total and phosphorylated eIF2
were analyzed by scanning densitometry using an AlphaImager (Alpha Innotech Corp.), and the relative extent of phosphorylation of the factor was calculated from the ratio between the values obtained for each pair of samples.
Analysis of Caspase-8 Activation.
The extent of activation of caspase-8 in MEFs was analyzed by immunoblotting for the active (p20) fragment of this enzyme and by assay of the cleavage of the caspase-8 substrate acetyl-isoleucyl-glutamyl-threonyl-aspartyl-p-nitroanilide by cell extracts (36)
.
| RESULTS |
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- and TRAIL-induced Down-Regulation of Protein Synthesis and Concurrent Initiation Factor Modifications Require Caspase Activity.
results in a progressive inhibition of protein synthesis, culminating in an 8090% decrease after 24 h. No greater down-regulation is observed in MCF-7.3.28 cells stably transfected with the caspase-3 gene (33)
, which express pro-caspase-3 to high levels (data not shown). Treatment of the two cell lines with TRAIL has a much more rapid effect, such that by 4 h, protein synthesis is inhibited by 7075% (Fig. 1B)
or TRAIL is not dependent on caspase-3 activity.
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or TRAIL in the presence of the broad spectrum caspase inhibitor z-VAD.FMK. Fig. 1, C and D
or 8-h treatment with TRAIL. A similar effect was also observed with another caspase inhibitor, N-tert-butoxycarbonyl-Asp-fluoromethylketone (data not shown). Other proteases may also be inhibited by z-VAD.FMK, and cathepsin-B, in particular, is a target for this compound (38)
. However, benzyloxycarbonyl-Phe-Ala-fluoromethylketone, which inhibits cathepsin-B but not caspases, was unable to rescue cells from the inhibitory effect of TRAIL (data not shown). Collectively, these data suggest that the inhibition of general protein synthesis brought about by proapoptotic members of the TNF family requires active caspases but not caspase-3 specifically. The early down-regulation of protein synthesis by TNF
or TRAIL is not a consequence of a possible loss of cell viability associated with apoptosis, because more than half of the cells treated with TNF
and >90% of the cells treated with TRAIL are viable (as judged by trypan blue exclusion) at 16 and 4 h, respectively (Table 1)
75%.
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for 16 h, whereas eIF4G remains intact, as reported previously (4)
. The well-characterized caspase substrate PARP is also cleaved to give rise to an Mr 89,000 fragment (Fig. 2A)
-treated MCF-7.3.28 cells, the eIF4GI cleavage product M-FAG was clearly visible (Fig. 2A)
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subunit of eIF2 (5)
. This blocks the ability of the factor to participate in successive rounds of initiation complex formation, leading to a decrease in the rate of global protein synthesis (39)
. A similar phenomenon occurs in response to TNF
treatment, the level of phosphorylated eIF2
being increased by 5080% in both MCF-7 and MCF-7.3.28 cells (Fig. 2, A and B)
is cleaved by one or more caspases (5
, 9
, 10
, 12)
, and we have also observed this, particularly for phosphorylated eIF2
, after TNF
treatment (Fig. 2A)
occur by mechanisms that require caspase (but not specifically caspase-3) activity under these conditions.
Protein synthesis may also be inhibited as a result of dephosphorylation of 4E-BP1, causing sequestration of eIF4E away from eIF4G and impairment of cap-dependent initiation of translation (29)
. As shown in Fig. 2A
(bottom panels), the level of eIF4E isolated from TNF
-treated cells remains unchanged, but the binding of 4E-BP1 to eIF4E is increased dramatically in both MCF-7 cell types. Again, this change is prevented by z-VAD.FMK.
Essentially similar results are seen when MCF-7 cells are treated with TRAIL (Fig. 3)
. Phosphorylation of eIF2
is enhanced by
50% within 4 h in both MCF-7 and MCF-7.3.28 cells (Fig. 3, A and B)
, and eIF4B is cleaved in both cases as well (Fig. 3C)
. However, the cleavage of eIF4GI, as well as that of the j subunit of eIF3 (p35), requires the specific expression of caspase-3 (Fig. 3, B and C)
. The association of 4E-BP1 with eIF4E also increases in a z-VAD.FMK-sensitive manner when MCF-7 or MCF-7.3.28 cells are treated with TRAIL (Fig. 3D)
. All of the above observations thus support the notion of links between modifications of translation initiation factors and caspase activation in MCF-7 breast cancer cells undergoing apoptosis in response to members of the TNF family.
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-induced Inhibition of Protein Synthesis in Murine MEFs Requires Both Caspase and PKR Activity.
inhibits protein synthesis by
50% in control (PKR+/+) MEFs but has no effect on cells that are deficient in the protein kinase. The TNF
effect in control MEFs was again sensitive to the caspase inhibitor z-VAD.FMK, suggesting roles for both PKR and caspase activity in the translational response to the cytokine. There is no significant loss of cell viability in the MEFs under these conditions of TNF
treatment (Table 1)
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-induced inhibition of translation is accompanied by a lack of response of these cells to other TNF-induced signaling events, we assayed the state of phosphorylation of the stress-activated protein kinases c-Jun-NH2-terminal kinase and p38, enzymes that are known to be activated by TNF
in fibroblasts (14)
. As has been reported by others (41)
, activation of c-Jun-NH2-terminal kinase and p38 by TNF
treatment was defective in PKR-/- cells (data not shown). We also investigated whether the apical caspase, caspase-8, was activated in these cells. This enzyme associates with the DISC complex and is activated rapidly by autocatalytic cleavage in cells treated with members of the TNF
family (15)
. Fig. 4B
with appearance of the active, cleaved form of caspase-8 (p20) within 15 min, although the effect is transient. A substantial but transient increase in caspase-8 activity can also be detected in extracts of these cells over a similar period of time (Fig. 4C)
-treated PKR-/- cells. These data suggest that PKR is required for many of the cellular responses to activation of the TNF
receptor.
The DNA-damaging Agent Etoposide Inhibits Protein Synthesis by a PKR- and Caspase-independent Mechanism.
Agents and conditions that cause DNA damage are well known as inducers of apoptosis (42)
, and, although there are conflicting reports as to whether TNF family receptors are involved (23
, 43) , the apoptotic response activates downstream pathways similar to those stimulated by TNF
and TRAIL (42)
. Protein synthesis is inhibited rapidly in response to exposure of cells to the DNA topoisomerase II inhibitor etoposide and other DNA-damaging agents (5
, 6)
. Similarly, etoposide is a potent inhibitor of protein synthesis in MCF-7 cells, irrespective of whether caspase-3 is expressed in the cells (Fig. 5)
. Again, this is not because of any extensive loss of cell viability (data not shown). In contrast to the situation with TNF
or TRAIL, z-VAD.FMK does not interfere with translational inhibition by etoposide (Fig. 5B)
. Moreover, immunoblot analysis of MCF-7 cells treated with etoposide showed that apoptosis, as assayed by PARP cleavage, was induced at 20 h but not at 4 h (data not shown), suggesting that the translation rate is depressed significantly before caspase activation in this system. Etoposide treatment inhibits protein synthesis in MEFs by
30% at 4 h and
80% at 20 h (Fig. 5C)
. This effect does not require PKR activity because PKR-/- cells are inhibited equally. Overall, these results suggest that the effects of etoposide on translation are independent of both caspase and PKR activity.
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and TRAIL, etoposide does not cause any consistent increase in the extent of phosphorylation of eIF2
in MCF-7 cells (Fig. 6, A and C)
phosphorylation, and this requires the presence of PKR (Fig. 6, B and D)
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| DISCUSSION |
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inhibits translation in skeletal muscle (44)
, and stimulation of the Fas receptor down-regulates translation in Jurkat cells (5)
, but little is known of the mechanisms by which these effects are mediated.
Previously, we reported that eIF4GI cleavage in response to TNF
and other proapoptotic agents in MCF-7 cells requires caspase-3 (4)
. However, apoptosis itself can occur in MCF-7 cells in the absence of caspase-3 (33
, 37)
, and other caspases have been implicated in TNF
effects on cells (22)
. Here we have shown that protein synthesis is inhibited in both caspase-3-positive and -negative cells in response to TNF
or TRAIL. Thus, mechanisms other than eIF4GI cleavage must be sufficient for the inhibition. Nevertheless, translational down-regulation is likely to be a caspase-dependent process in this system because it is prevented by z-VAD.FMK. It is possible that the cleavages of eIF4B (Refs. 9
and 45
; and perhaps eIF4GII; Refs. 9
and 46
), which are mediated by other caspases, and/or the caspase-dependent phosphorylation of eIF2
and increased association of 4E-BP1 with eIF4E may be involved. There could also be a role for caspase-dependent 28S rRNA cleavage, which occurs in response to apoptotic stimuli (13)
. In 293 cells, cleavage of eIF4G by an inducible poliovirus 2A protease is sufficient to cause apoptosis (47)
.
Numerous studies have implicated PKR in both the inhibition of protein synthesis and the induction of stress responses and apoptosis (28
, 31
, 32
, 41
, 48
, 49)
. One report (50)
indicates that PKR can be activated by ceramide, a lipid second messenger generated during cellular stress and associated with apoptotic responses (51
, 52)
. PKR is also involved in the activation of transcription factors of the NF
B family, although the kinase is not essential for the activation of NF
B by either TNF
or double-stranded RNA (32
, 53, 54, 55, 56, 57)
. Both eIF2
phosphorylation and NF
B activation are necessary for PKR-induced apoptosis, and translational inhibition alone is not sufficient (32
, 48)
. Taken in conjunction with these earlier observations, our present findings with PKR-/- MEFs imply that TNF
-induced activation of NF
B alone is not sufficient to inhibit translation.
In the case of MCF-7 cells, PKR is present at relatively high levels and is active (58)
. Our observations of substantial phosphorylation of eIF2
in the exponentially growing cells are in agreement with this. MCF-7 cells seem able to tolerate significant phosphorylation of eIF2
, perhaps because they contain high eIF2B activity (58)
, and this may be a property that contributes to their malignant phenotype. Although it is not clear whether the enhanced phosphorylation of eIF2
seen after TNF
or TRAIL treatment (Figs. 2
and 3
and Ref. 32
) is sufficient to affect overall protein synthetic rates in MCF-7 cells, both the TNF
-stimulated phosphorylation of eIF2
and the inhibition of protein synthesis show a common requirement for caspase activity.
It is possible that the effects of TNF
on apoptosis in the MCF-7 cell system involve the tumor suppressor protein p53 (59)
. Cell lines (including MCF-7 cell variants) that contain mutant or inhibited p53 show resistance to TNF
-induced cell death, and this can be reversed by the expression of wild-type p53 (22
, 59)
. TNF
is also able to induce p53 expression (60
, 61) . We have found recently that activation of a temperature-sensitive form of p53 leads to a rapid inhibition of overall translation. However there are some differences between the actions of TNF
or TRAIL and the effects of p53 activation.5
Taken together, our data are compatible with a model in which PKR is essential for the expression or activation of caspase-8 and/or other components of a signaling pathway that leads from TNF family receptors to the translational machinery (Fig. 7)
. This conclusion is consistent with work showing that the receptor-associated adapter protein FADD is required for the apoptotic response to PKR activation and is down-regulated in cells expressing dominant-negative PKR (62)
. Our observation that caspase-8 is not activated by TNF
treatment in PKR-/- cells places the kinase (or a PKR-dependent event) upstream of FADD and caspase-8. Interestingly, PKR can activate caspase-8 by a FADD-mediated mechanism downstream of TNF
receptors (63)
and can itself be activated after cleavage by effector caspases (64)
. This suggests the existence of a positive feedback loop in the regulation of apoptosis by the kinase. Our data on the effects of etoposide, on the other hand, suggest that DNA damage regulates PKR more distally, at a point beyond that requiring any caspase activity (Fig. 7)
.
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or TRAIL indicates a caspase dependency that links the effect with apoptosis. In contrast, Tee and Proud (6)
found that z-VAD.FMK was unable to block the effect of etoposide on 4E-BP1 binding to eIF4E. This is consistent with our observation of a lack of effect of the caspase inhibitor on the inhibition of protein synthesis by this DNA-damaging agent. The requirement for PKR for the association of 4E-BP1 with eIF4E after etoposide treatment (Fig. 6)
by PKR (65)
. Thus, although DNA damage can inhibit the activity of the 4E-BP1 protein kinase mTOR (66)
, PKR-mediated activation of PP2A may also bring about the dephosphorylation of 4E-BP1 (67)
.
Finally, the differential requirements for PKR for increased eIF2
phosphorylation and 4E-BP1 association with eIF4E, versus the inhibition of methionine incorporation after etoposide treatment, suggest that inhibition of the availability of eIF2 and eIF4E cannot alone account for the effect of the DNA-damaging agent on overall translation. Therefore, it is likely that etoposide has additional mechanisms of action on the protein synthetic machinery, the nature of which remain to be determined.
| FOOTNOTES |
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1 Supported by grants from the Wellcome Trust (040800, 058915, 057494, 045619, and 056778), the Leukaemia Research Fund, the Cancer Prevention Research Trust, and Glaxo-Wellcome. S. J. M. is a Senior Research Fellow of the Wellcome Trust. ![]()
2 Present address: Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305. ![]()
3 To whom requests for reprints should be addressed, at Department of Biochemistry and Immunology, Cellular and Molecular Sciences Group, St Georges Hospital Medical School, Cranmer Terrace, London SW17 0RE, United Kingdom. Phone: 44-20-8725-5762; Fax: 44-20-8725-2992; E-mail: M.Clemens{at}sghms.ac.uk ![]()
4 The abbreviations used are: TNF, tumor necrosis factor; 4E-BP1, eukaryotic initiation factor 4E-binding protein; DISC, death-inducing signaling complex; eIF, eukaryotic initiation factor; FADD, Fas-associated death domain protein; MEF, murine embryonic fibroblast; PARP, poly(ADP-ribose) polymerase; PKR, double-stranded RNA-regulated protein kinase; TRAIL, tumor necrosis factor-related apoptosis-inducing ligand; z-VAD.FMK, benzyloxycarbonyl-Val-Ala-Asp-fluoromethylketone; mTOR, mammalian target of rapamycin; NF
B, nuclear factor
B. ![]()
5 J. Hensold, V. Tilleray, M. Bushell, and M. J. Clemens, unpublished data. ![]()
Received 6/18/01. Accepted 2/ 5/02.
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