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Tumor Biology |
Departments of Clinical Chemistry [J. B. d. K., R. W. R., D. W. S.], Experimental Urology [G. W. V., D. H., L. A. K., T. W. A., J. A. S.], and Epidemiology and Biostatistics [L. A. K.], University Medical Centre Nijmegen, 6500 HB Nijmegen, the Netherlands
| ABSTRACT |
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| INTRODUCTION |
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A significant contribution to the early detection of prostate cancer has been the discovery of PSA2 and subsequent development of various immunological assays in serum. Serum PSA is now recognized as the premier marker for detection of prostate cancer and can be used for screening selected populations of patients and for monitoring patients after therapy (1) . However, serum PSA levels are regularly elevated in men with BPH, prostatitis, and other nonmalignant disorders, resulting in reduced specificity (1) .
Novel cancer-specific markers have been identified that may aid early diagnosis and help to differentiate between tumor and nonmalignant growth. Telomerase activity is one of the most promising markers. High activity has been detected in the majority (90%) of prostate tumors (2 , 3) , whereas only low or absent activity was observed in normal and BPH tissues (3, 4, 5) . An alternative for telomerase activity measurement is the quantification of telomerase reverse transcriptase mRNA (hTERT gene) by use of real-time quantitative PCR (6) . Because hTERT expression is the rate-limiting determinant of the telomerase enzyme (7) , accurate quantification of hTERT mRNA copies may better differentiate between malignant and benign prostate growth than semiquantitative telomerase activity measurements.
Next to hTERT gene expression, other genes, such as PSGR and PCGEM1, have recently been identified that have more prostate-specific expression (8 , 9) . We identified and characterized DD3PCA3 (DD3), a new prostate-specific gene (10) . Northern blot analysis showed that DD3 mRNA is expressed at low levels in normal prostate and is abundantly present in prostate tumor tissues (10) . A more quantitative, reproducible, and sensitive assay is necessary to test DD3 as a diagnostic or prognostic marker in clinical samples, which often contain only small amounts of mRNA.
| MATERIALS AND METHODS |
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RNA Isolation and cDNA Synthesis.
Total RNA from healthy and tumor tissues was isolated by disruption of 1025 frozen, 20-µm sections in 1 ml of RNAzolB (Biotex Laboratories Inc, Houston, TX) or TRIzol (Life Technologies, Inc., Breda, the Netherlands) using a sterile pestle. After the manufacturers protocols were completed, RNA was further purified using the RNeasy kit (Qiagen, Hilden, Germany). RNA was quantified spectrophotometrically.
Purified RNA (0.21.0 µg) was added to RNase-free water to a final volume of 10 µl, denatured for 5 min at 90°C, and cooled immediately on ice. Reverse transcription mixture (10 µl) was added, containing first strand buffer (Life Technologies, Inc.), 200 units of Moloney murine leukemia virus (Life Technologies, Inc.), 20 units of RNasin (Promega, Madison Wisconsin), 10 mM DTT, 4.75 µM random hexamers, and 600 µM deoxynucleotides. After annealing of the hexanucleotides for 10 min at 20°C, cDNA synthesis was performed for 45 min at 42°C, followed by an enzyme inactivation step for 5 min at 95°C. cDNA was stored at -20°C until use.
Quantitative Measurement of PCA3, hTERT, and 18S rRNA.
The gene sequence of DD3 is presented in GenBank accession no. AF103907. The structure of the DD3 gene with exon-intron boundaries was described previously (10)
. Primers and a TaqMan probe for the cDNA-specific real-time quantitative PCR assay were designed: (a) DD3-95F (located in exon 1), 5'-GGTGGGAAGGACCTGATGATAC-3', (b) DD3-521R (located in exon 4a), 5'-GGGCGAGGCTCATCGAT-3', and probe DD3-FAM (located in exon 4a), 5'-FAM-AGAAATGCCCGGCCGCCATC-TAMRA-3'. In the quantitative PCR assay we added 30 pmol of each primer, 20 pmol of TaqMan probe, 25 µl of Universal Master Mix (Applied Biosystems, Foster City, CA), and 1 µl of cDNA in a total reaction volume of 50 µl. After enzyme inactivation for 10 min at 95°C, 40 two-step cycles were performed (30 s at 95°C, 75 s at 60°C). Because 95% of the DD3 mRNA splice products consist of exons 1, 3, and 4a, the size of the majority of PCR amplicons was 262 bp (10)
. When no increase in fluorescence was detected after 40 PCR cycles, samples were regarded as negative for DD3 expression.
For quantitative hTERT mRNA measurements, we used 45 pmol of primer LT5 (5'-CGGAAGAGTGTCTGGAGCAA-3'), 15 pmol of primer LT6 (5'-GGATGAAGCGGAGTCTGGA-3'), 10 pmol of probe (5'-FAM-TTGCAAAGCATTGGAATCAGACAGCACT-TAMRA 3'), 25 µl of Universal Master Mix, and 1 µl of cDNA in a 50-µl reaction volume. PCR cycling parameters were 10 min at 95°C, followed by 40 cycles of 30 s at 95°C and 60 s at 60°C.
The level of 18S rRNA (rRNA) expression was measured in all samples to normalize DD3 and hTERT expression for sample-to-sample differences in RNA input, RNA quality, and reverse transcription efficiency. For quantification of rRNA we used a Pre Developed Assay Reagent and followed the accompanying instructions (Applied Biosystems). To prevent low Ct values from interfering with calculations of the threshold baseline, cDNA samples were diluted 20-fold in water. Amplification parameters were identical to those for hTERT, but only 25 PCR cycles were performed.
The principle of the real-time PCR is described by Gibson et al. (11) . PCR reactions were performed in the ABI Prism 7700 Sequence Detection System (Applied Biosystems), and Ct values for DD3, hTERT, and 18S rRNA were derived by the computer. To be able to transform the Ct values into absolute mRNA copy numbers, we used a calibration curve (5-log range) that was prepared from a dilution series of linearized plasmid containing the DD3, hTERT, or rRNA amplicon insert.
Statistical Analysis.
The distributions of normalized hTERT and normalized DD3 were characterized by their median values and ranges. Differences in these markers between normal and tumor tissue were tested for statistical significance with the nonparametric Mann-Whitney U test. The nonparametric Kruskal-Wallis test was used to test differences between prostate cancer patients with different tumor stages and Gleason scores.
To visualize the efficacy of the two markers to discriminate tumor tissue from normal tissue (in the absence of an arbitrary cutoff value), we summarized the data in a ROC curve. This curve plots the sensitivity (true positives) on the Y axis against 1 - the specificity (false positives) on the X axis, considering each observed value as a possible cutoff value. The AUC was calculated as a single measure for the discriminative efficacy of a marker. When a marker has no discriminative value, the ROC curve will lie close to the diagonal and the AUC is close to 0.5. When a test has strong discriminative value, the ROC curve will move up to the upper left-hand corner and the AUC will be close to 1.0. The Statistical Package for Social Sciences (SPSS) was used for analyses.
| RESULTS |
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For DD3, median normalized expression was also significantly different between nonmalignant (median, 174; range, 0593) and malignant prostate tissues (median, 5,849; range, 33439,456; P < 0.0001). Median up-regulation of DD3 from normal to tumor tissues was 34-fold. Even in tissues containing
10% tumor cells, normalized DD3 expression was clearly higher than that in nonmalignant tissues (Table 3
, samples 3847). No significant correlation was found between DD3 expression and tumor stage or Gleason score.
A ROC curve was constructed for both markers (Fig. 1)
. The AUC-ROC represents the diagnostic efficacy of the continuous test result. The AUC-ROC was 0.98 (95% confidence interval, 0.961.00) for DD3 and 0.88 (95% confidence interval, 0.780.97) for hTERT, indicating good discrimination power for both tests.
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| DISCUSSION |
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10% tumor cells, in which DD3 showed higher sensitivity than hTERT. Moreover, in prostate tumors, the median normalized expression of DD3 mRNA was
580-fold higher than hTERT mRNA (5849 versus 10 normalized copies, respectively). This high expression in tumor cells may also be advantageous for the detection of the few malignant prostate cells shed into blood, urine, prostatic massage fluid, or ejaculate. In addition, DD3 mRNA expression could not be detected in leukocytes, which are regularly present in these bodily fluids, whereas hTERT mRNA is expressed in leukocytes and may cause false positivity (13
, 14)
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We previously detected a statistically significant relationship between the expression of hTERT mRNA and tumor stage and grade in urothelial cell carcinomas (15)
. Others found a similar relationship for breast tumors and Wilms tumors (16
, 17) . In the present study in prostate tumors, this correlation was observed only for stage, but not for Gleason score (grade). The 21 analyzed prostate tissues (with tumor cells
20%) were derived from radical prostatectomies, with only little variation in stage and grade. This low number may have caused the lack of correlation with grade. In contrast, Latil et al. (18)
did not detect a correlation between hTERT expression and pathological parameters for 33 prostate tumor samples with a broader range of stage and Gleason grade.
Typically, both we (present study) and Latil et al. (18) detected low hTERT expression in the majority of samples from normal prostate tissues and BPH. This contrasts with findings using the telomeric repeat amplification protocol, with which telomerase activity could not be detected in most normal and BPH tissues (3, 4, 5) . The difference can be explained by the increased sensitivity of the real-time reverse transcription-PCR assay (16 , 18) . Moreover, low hTERT expression in normal prostate tissues corroborates findings that prostatic tissues contain stem cells (19) , which generally express telomerase activity.
Recently, DD3 has been described as one of the most prostate cancer-specific genes (10) . Unfortunately, the biological function of DD3 has not been unraveled, and no homology to any gene present in the computer databases has been found (10) . Because of the lack of extensive open reading frames, we suspect that the gene functions as a noncoding RNA (10) . Therefore, a mRNA-based method was necessary to quantify the expression of DD3 in tissues. Our quantitative gene expression data showed that DD3 is regulated by a unique prostate cancer-specific transcriptional mechanism. However, no correlation between transcriptional activity and tumor stage or grade was detected. For future clinical applications, our real-time, quantitative reverse transcription-PCR test will provide a very sensitive and specific tool to detect prostate tumor cells in tissue biopsies and bodily fluids.
| FOOTNOTES |
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1 To whom requests for reprints should be addressed, at 564 AKC, UMC Nijmegen, P. O. Box 9101, 6500 HB Nijmegen, the Netherlands. Fax: 31-24-3541743; E-mail: J.dekok{at}ckcl.azn.nl ![]()
2 The abbreviations used are: PSA, prostate-specific antigen; BPH, benign prostate hyperplasia; hTERT, human telomerase reverse transcriptase; DD3, prostate cancer antigen 3 (PCA3, according to HUGO nomenclature); FAM, 6-carboxyfluorescein; TAMRA, 6-carboxytetramethylrhodamine; Ct, threshold cycle; AUC, area under the curve; ROC, receiver-operating characteristic. ![]()
Received 9/17/01. Accepted 2/26/02.
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