| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
Molecular Biology and Genetics |
Center for Genome Research, Samsung Biomedical Research Institute [D-H. K., J. S. K., Y-I. J., J. P.] and Departments of Thoracic Surgery [Y. M. S.], Division of Pulmonary and Critical Care Medicine [H. K.], and Pathology [J. H.], Samsung Medical Center, Sungkyunkwan University, School of Medicine, Seoul, Korea 135-710, and Department of Molecular Cell Biology, Sungkyunkwan University, School of Medicine, Suwon, Korea 440-746 [J. P.]
| ABSTRACT |
|---|
|
|
|---|
3.27 times higher for patients with hypermethylation of the RASSF1A promoter than for those without hypermethylation of the RASSF1A promoter (95% CI = 1.428.71; P = 0.01). Young smokers who started the habit before the age of 19 also had a poorer prognosis than those who started after the age of 19 (hazard ratio = 2.14, 95% CI = 1.229.11; P = 0.02). Our results suggest that starting cigarette smoking at an early age is associated with hypermethylation of the RASSF1A promoter and that hypermethylation of the RASSF1A promoter may be an independent prognostic factor in primary non-small cell lung cancer. | INTRODUCTION |
|---|
|
|
|---|
Recently, several groups have reported that DNA hypermethylation is associated with exposure to tobacco smoke (1, 2, 3, 4, 5) . The prevalence of hypermethylation at the D17S5 locus was found to be significantly higher in smokers than in nonsmokers in both tumorous and nontumorous lung tissues (1) . The de novo methylation of the p16 promoter was reported to occur at a high frequency in lung cancer induced by the inhalation of cigarette smoke in F344/N rats (2) . Hypermethylation of the p16 promoter was also detected in 94% of rat adenocarcinomas induced by tobacco-specific 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (3) . Kim et al. (4) reported that hypermethylation of the p16 gene is associated with the duration of smoking in primary NSCLC.3 Recently, aberrant promoter hypermethylation of the p16 gene was detected in the bronchial epithelium and sputum of current and former smokers (5) .
The aberrant methylation of normally unmethylated CpG islands is an epigenetic change that induces the transcriptional inactivation of tumor suppressor genes. The promoter methylation of several tumor suppressor genes has been reported in various tumors, including lung cancer. Among the common targets for aberrant methylation in NSCLC are the promoter regions of the p14, p16, and RASSF1 genes. Hypermethylation at the 5' CpG islands of the p16 gene has been identified as a mechanism of p16 inactivation in NSCLC (3 , 6) . Recently, an aberrant methylation at the human p14 promoter has been reported in colorectal cancer cell lines (7) and many primary tumors, such as nasopharyngeal carcinoma (8) , colorectal carcinoma (9) , esophageal carcinoma, and lung cancer (10) . Loss of heterozygosity at chromosome 3p21.3 is one of the most common and one of the earliest events that occur in the pathogenesis of lung cancer (11, 12, 13) . RASSF1A (Ras association domain family 1A) gene is a candidate tumor suppressor gene at 3p21.3. Although the lack of expression of RASSF1A is common in lung cancer, mutations of RASSF1A are rare (14 , 15) . It has been reported that the RASSF1A gene is frequently inactivated in primary lung cancers by the de novo methylation of CpG islands in the promoter region (10 , 14, 15, 16, 17) .
To investigate the association between the age at starting smoking and the hypermethylation of tumor suppressor genes known to be important to lung cancer carcinogenesis, we determined the methylation status of the p14, p16, and RASSF1A promoters using MSP in 204 primary NSCLC patients. In this study, we also further studied the relationship between the promoter methylation of these genes and patients overall survival.
| MATERIALS AND METHODS |
|---|
|
|
|---|
DNA Extraction from Paraffin Tissue Blocks.
Formalin-fixed, paraffin wax-embedded tissues were cut into slides at 10-µm thickness. Before DNA extraction, the tissues were stained with H&E to locate the tumor areas. Areas corresponding to tumor and the surrounding normal lung tissue were microdissected separately. Before DNA extraction, xylene was added to the microdissected tissues to remove the paraffin with vigorous vortexing. After centrifuging at full speed for 5 min, the supernatant was removed. After ethanol precipitation, the tissue pellet was resuspended in lysis buffer ATL (Qiagen), and DNA was isolated according to the manufacturers instructions (Qiagen).
Methylation Analysis.
The methylation status of the p14, p16, and RASSF1A promoters was analyzed by MSP, as described previously by Herman et al. (18)
. Two sets of primers were designed, one specific for DNA methylated at the promoter region of each gene and the other specific for unmethylated DNA. The primers used for MSP have been described previously (9
, 15
, 18)
.
Statistical Analysis.
The association between the methylation status of the p14, p16, and RASSF1A promoters and the clinicopathological characteristics was analyzed using Wilcoxons rank-sum test and Fishers exact test (or the Mantel-Haenszel
2 test). Multivariate logistic regression was conducted to estimate the relationships between hypermethylation of a gene and covariates. The effect of methylation on patient survival was estimated by the Kaplan-Meier method, and differences between two groups were compared using the Log-rank test. Cox proportional hazard regression analysis was performed to estimate the hazard ratio after controlling for potential confounding factors.
| RESULTS |
|---|
|
|
|---|
|
|
|
Multivariate Logistic Regression Analysis.
Logistic regression analysis was performed to control for the potential confounding effects of variables, such as age, sex, stage, and histology, and to calculate OR. The age at starting smoking was significantly associated with hypermethylation of the RASSF1A promoter (Table 2a)
. Young smokers who started smoking below age 19 had an increased risk of hypermethylation at the promoter region of RASSF1A gene compared with those who started smoking after age of 19 (OR = 4.23, 95% CI = 1.039.67; P = 0.001). Hypermethylation of RASSF1A occurred at 2.23 times higher prevalence in adenocarcinoma than in squamous cell carcinoma (95% CI = 1.3411.23; P = 0.03).
|
|
| DISCUSSION |
|---|
|
|
|---|
The increased activity of DNA methyltransferase is one of the likely factors for the increased susceptibility to the CpG island hypermethylation of a specific gene in young smokers. Tobacco smoke contains numerous carcinogens, including 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone, polyaromatic hydrocarbons, and metals, such as chromium, cadmium, and nickel. Smoking increases the activity of DNA methyltransferase and thereby induces DNA methylation (20) . In addition, increased DNA methyltransferase drives de novo hypermethylation of susceptible loci (5 of 12 CpG islands) on a gene-specific basis (19) .
Another possible factor is cis-acting elements that block the spread of methylation from a methylation center and thereby protect CpG islands from methylation. Multiple SP-1 sites are located at both the 5' and 3' boundaries to potentially protect the islands from the spread of methylation from a methylation center. Exposure to tobacco smoke in young age could cause selective changes in a limited set of key regulatory transcription factors, such as SP1 protein. The cis-acting element that normally maintains islands free of methylation could be easily disrupted by exposure to tobacco smoke in adolescence. In addition, binding proteins like those that may interact with the SP-1 sites at the island borders could also be disrupted by exposure to tobacco smoke. Accordingly, if these binding proteins were deficient in function or amount in adolescent smokers, the CpG islands of a specific gene might be rendered vulnerable to methylation.
The histone that helps maintain chromatin structure around the promoter region of a gene may also affect the genetic susceptibility to hypermethylation. A fifth histone, H1, is bound to the DNA on the inside of the solenoid structure of condensed chromatin. Histone H1 has a clear preference for methylated CpG, irrespective of the DNA sequences. One variant of histone H1, H1e, is known to exert a specific inhibitory effect on DNA methyltransferase activity in vitro by binding to CpG-rich DNA around promoter regions. Thus, if tobacco smoke affects the function of H1e, the chromatin structure around a CpG island may be changed, and this may play a role in gene-specific hypermethylation in young smokers. The developmental status of chromatin structure during adolescence can also affect the genetic susceptibility to methylation of a gene, because patterns of higher order chromatin organization are established during development. Interestingly, chromatin patterns in young and senescent human fibroblasts are different. A global shift in chromatin structure occurs in several regions of chromatin through development. Thus, a high prevalence of hypermethylation of RASSF1A promoter in smokers that started smoking early in life may be secondary to a lack of heterochromatinization at the promoter region of the RASSF1A gene during youth.
We also studied the prognostic significance of RASSF1A methylation and found that the prognosis of patients with hypermethylation of RASSF1A was poorer than those without. This observation is consistent with those of others (15 , 17) . We stratified data by the age at starting smoking to determine whether hypermethylation of the RASSF1A promoter is an independent prognostic factor irrespective of the age at starting smoking. Among those who started smoking at <19 years, those with hypermethylation of the RASSF1A promoter showed poorer survival than those without hypermethylation of the RASSF1A promoter. Hypermethylation of the RASSF1A promoter was also associated with poorer survival among patients who started smoking late in life. These results suggest that hypermethylation of the RASSF1A is an independent prognostic factor in NSCLC.
In conclusion, this study demonstrates that early initiation of smoking is associated with hypermethylation of the RASSF1A promoter in NSCLC and that hypermethylation of the RASSF1A promoter may affect a patients survival in NSCLC. Additional work is required to understand local-specific factors responsible for the increased susceptibility to hypermethylation of a specific gene in young smokers.
| ACKNOWLEDGMENTS |
|---|
| FOOTNOTES |
|---|
1 Supported by Samsung Biomedical Research Institute. ![]()
2 To whom requests for reprints should be addressed, at the Center for Genome Research, Samsung Biomedical Research Institute, Rm B155, #50 Ilwon-dong, Kangnam-Ku, Seoul, Korea, 135-710. Phone: (02) 3410-3632; Fax: (02) 3410-3649; E-mail: dukhwan{at}samsung.co.kr ![]()
3 The abbreviations used are: NSCLC, non-small cell lung cancer; MSP, methylation-specific PCR; OR, odds ratio. ![]()
Received 1/29/03. Accepted 5/ 2/03.
| REFERENCES |
|---|
|
|
|---|
This article has been cited by other articles:
![]() |
Y. Kawai, S. Sakano, Y. Suehiro, T. Okada, Y. Korenaga, T. Hara, K. Naito, H. Matsuyama, and Y. Hinoda Methylation level of the RASSF1A promoter is an independent prognostic factor for clear-cell renal cell carcinoma Ann. Onc., December 27, 2009; (2009) mdp577v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. Vaissiere, R. J. Hung, D. Zaridze, A. Moukeria, C. Cuenin, V. Fasolo, G. Ferro, A. Paliwal, P. Hainaut, P. Brennan, et al. Quantitative Analysis of DNA Methylation Profiles in Lung Cancer Identifies Aberrant DNA Methylation of Specific Genes and Its Association with Gender and Cancer Risk Factors Cancer Res., January 1, 2009; 69(1): 243 - 252. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. M. Wolff, G. Liang, C. C. Cortez, Y. C. Tsai, J. E. Castelao, V. K. Cortessis, D. D. Tsao-Wei, S. Groshen, and P. A. Jones RUNX3 Methylation Reveals that Bladder Tumors Are Older in Patients with a History of Smoking Cancer Res., August 1, 2008; 68(15): 6208 - 6214. [Abstract] [Full Text] [PDF] |
||||
![]() |
Q. Feng, S. E. Hawes, J. E. Stern, L. Wiens, H. Lu, Z. M. Dong, C. D. Jordan, N. B. Kiviat, and H. Vesselle DNA Methylation in Tumor and Matched Normal Tissues from Non-Small Cell Lung Cancer Patients Cancer Epidemiol. Biomarkers Prev., March 1, 2008; 17(3): 645 - 654. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Gu, D. Berman, C. Lu, I. I. Wistuba, J. A. Roth, M. Frazier, M. R. Spitz, and X. Wu Aberrant Promoter Methylation Profile and Association with Survival in Patients with Non-Small Cell Lung Cancer Clin. Cancer Res., December 15, 2006; 12(24): 7329 - 7338. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. J. Marsit, M. R. Karagas, H. Danaee, M. Liu, A. Andrew, A. Schned, H. H. Nelson, and K. T. Kelsey Carcinogen exposure and gene promoter hypermethylation in bladder cancer Carcinogenesis, January 1, 2006; 27(1): 112 - 116. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. T. Kim, S. J. Park, S. H. Lee, H. J. Kang, S. Hahn, C. H. Kang, S. W. Sung, and J. H. Kim Prognostic implication of aberrant promoter hypermethylation of CpG islands in adenocarcinoma of the lung J. Thorac. Cardiovasc. Surg., November 1, 2005; 130(5): 1378 - 1378. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Prochazka, P. Hall, G. Gagliardi, F. Granath, B. N. Nilsson, P. G. Shields, M. Tennis, and K. Czene Ionizing Radiation and Tobacco Use Increases the Risk of a Subsequent Lung Carcinoma in Women With Breast Cancer: Case-Only Design J. Clin. Oncol., October 20, 2005; 23(30): 7467 - 7474. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. O. Hoque, E. Rosenbaum, W. H. Westra, M. Xing, P. Ladenson, M. A. Zeiger, D. Sidransky, and C. B. Umbricht Quantitative Assessment of Promoter Methylation Profiles in Thyroid Neoplasms J. Clin. Endocrinol. Metab., July 1, 2005; 90(7): 4011 - 4018. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. J. Alberg, M. V. Brock, and J. M. Samet Epidemiology of Lung Cancer: Looking to the Future J. Clin. Oncol., May 10, 2005; 23(14): 3175 - 3185. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Agathanggelou, W. N. Cooper, and F. Latif Role of the Ras-Association Domain Family 1 Tumor Suppressor Gene in Human Cancers Cancer Res., May 1, 2005; 65(9): 3497 - 3508. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. J. Marsit, M. Hasegawa, T. Hirao, D.-H. Kim, K. Aldape, P. W. Hinds, J. K. Wiencke, H. H. Nelson, and K. T. Kelsey Loss of Heterozygosity of Chromosome 3p21 Is Associated with Mutant TP53 and Better Patient Survival in Non-Small-Cell Lung Cancer Cancer Res., December 1, 2004; 64(23): 8702 - 8707. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Guo, Y. Akiyama, M. G. House, C. M. Hooker, E. Heath, E. Gabrielson, S. C. Yang, Y. Han, S. B. Baylin, J. G. Herman, et al. Hypermethylation of the GATA Genes in Lung Cancer Clin. Cancer Res., December 1, 2004; 10(23): 7917 - 7924. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. J. Mazzone, T. Mekhail, and A. C. Arroliga Is Lung Cancer in the Nonsmoker a Different Disease? Chest, August 1, 2004; 126(2): 326 - 329. [Full Text] [PDF] |
||||
![]() |
H.-S. Hsu, Y.-C. Wang, R.-C. Tseng, J.-W. Chang, J.-T. Chen, C.-M. Shih, C.-Y. Chen, and Y.-C. Wang CpG Island Methylation Is Responsible for p14ARF Inactivation and Inversely Correlates with p53 Overexpression in Resected Non-Small Cell Lung Cancer Clin. Cancer Res., July 15, 2004; 10(14): 4734 - 4741. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. A. Belinsky, D. M. Klinge, K. C. Liechty, T. H. March, T. Kang, F. D. Gilliland, N. Sotnic, G. Adamova, G. Rusinova, and V. Telnov Plutonium targets the p16 gene for inactivation by promoter hypermethylation in human lung adenocarcinoma Carcinogenesis, June 1, 2004; 25(6): 1063 - 1067. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Yegnasubramanian, J. Kowalski, M. L. Gonzalgo, M. Zahurak, S. Piantadosi, P. C. Walsh, G. S. Bova, A. M. De Marzo, W. B. Isaacs, and W. G. Nelson Hypermethylation of CpG Islands in Primary and Metastatic Human Prostate Cancer Cancer Res., March 15, 2004; 64(6): 1975 - 1986. [Abstract] [Full Text] [PDF] |
||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
| Cancer Research | Clinical Cancer Research |
| Cancer Epidemiology Biomarkers & Prevention | Molecular Cancer Therapeutics |
| Molecular Cancer Research | Cancer Prevention Research |
| Cancer Prevention Journals Portal | Cancer Reviews Online |
| Annual Meeting Education Book | Meeting Abstracts Online |