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Advances in Brief |
Abramson Family Cancer Research Institute and Abramson Cancer Center at the University of Pennsylvania [S. R. H., M. A. J., D. A. T.] and Department of Medicine [S. R. H., D. A. T.], University of Pennsylvania and Wistar Institute [M. H.], Philadelphia, Pennsylvania 19104, and Departments of Pharmacology, Dermatology, and Pathology, Pennsylvania State University College of Medicine, Hershey, Pennsylvania 17033 [G. P. R.]
| ABSTRACT |
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| Introduction |
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Recently, activating mutations in the BRAF gene were described in a majority of melanomas and benign nevi, suggesting an important role for this oncogene in melanocyte biology and disease (4, 5, 6) . More than 60% of malignant melanomas were found to contain a specific mutation, BRAFV599E, the product of which possesses constitutive kinase activity. BRAF is a member of the Raf family of serine/threonine kinases, along with CRAF and ARAF, which serve as immediate effectors of the ras GTPases (7) . Activation of the Raf/MEK3 /ERK, or MAPK, signaling cascade promotes cellular proliferation and survival. The highly homologous Raf family members have overlapping but distinct biochemical activities and biological functions. We therefore sought to determine whether Raf family members, and specifically BRAFV599E, are required in melanoma cells for maintenance of the transformed state. Accordingly, the biochemical signaling properties and cellular phenotypes of melanoma cells were assessed after depletion of B-Raf, B-RafV599E, and C-Raf proteins by RNAi.
| Materials and Methods |
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Com-1: gatccccTGGATACCGTTACATCTTCttcaagagaGAAGATGTAA CGGTATCCAtttttggaaa.
Com-2: gatccccTCCCAGAGTGCTGTGCTGTttcaagagaACAGCACAGCACTCTGGGAtttttggaaa.
Com-3: gatccccTTGGTTGGGACACTGATATttcaagagaATATCAGTGTCCCAACCAAtttttggaaa.
Com-4: gatccccAGAATTGGATCTGGATCATttcaagagaATGATCCAGATCCAATTCTtttttggaaa.
Mu-A: gatccccGCTACAGAGAAATCTCGATttcaagagaATCGAGATTTCTCTGTAGCtttttggaaa.
Mu-B: gatccccGAGAAATCTCGATGGAGTGttcaagagaCACTCCATCGAGATTTCTCtttttggaaa.
C1: gatccccTGTGCGAAATGGAATGAGCttcaagagaGCTCATTCCATTTCGCACAtttttggaaa.
BRAF cDNA.
Human wild-type BRAF and BRAFV599E were cloned from mRNA and sequenced to confirm fidelity. 5' HA epitope tags were cloned into both cDNAs by PCR. Full-length BRAF cDNAs were subsequently cloned into pBABE.puro.
Cell Culture and Transfection.
WM793 melanoma cells were derived from a vertical growth phase tumor as described previously (10)
, and HT1080 and HEK cells were obtained from American Type Culture Collection. Cells were cultured under standard conditions (37°C in humidified atmosphere containing 5%CO2) and grown in DMEM supplemented with 25 mM HEPES (pH 7.4), 10% FCS, penicillin (100 units/ml), and streptomycin (100 µg/ml). To achieve transient suppression of gene expression, cells were plated in six-well dishes at 5060% confluency and transfected with 5 µg of duplex RNA plus 6 µl of OLIGOFECTAMINE (Life Technologies, Inc., Carlsbad, CA) per the manufacturers recommendations and as described (8
, 9)
. The specificity of the targeting sequences was determined by transient cotransfection of HEK cells with pBABE.puro.HA-tagged BRAF or pBABE.puro.HA-tagged BRAFV599E and shRNA vectors (11)
. For stable transfection experiments, cells were plated at 5080% confluency in 100-mm dishes and transfected with 4 µg of plasmid DNA and 12 µl of Fugene 6 (Roche, Indianapolis, IN) per the manufacturers instructions. Twenty-four h after transfection, cells were selected in media containing 2 µg/ml Puromycin for 6072 h and then collected for biochemical and cellular assays.
Immunoblotting.
Adherent cells were washed with ice-cold PBS and lysed and scraped in boiling SDS lysis buffer (10 mM Tris, 1% SDS, 50 mM NaF, and 1 mM VO4). Lysates were boiled for 5 min, the DNA was sheared, and insoluble debris was removed by microcentrifugation (14,000 rpm for 10 min). Protein concentrations were determined with bicinchoninic acid (Pierce, Rockford, IL). Samples (15 µg of total protein per lane) were resolved by reducing SDS-PAGE and transferred to Immobilon-P polyvinylidene difluoride membranes (Millipore, Bedford, MA). Membranes were blocked and incubated with primary antibodies in TBS [150 mM Tris-HCL (pH 8.0) and 150 mM NaCl] + 3% BSA for antiphospho antibodies or 5% nonfat dry milk/TBS for other antibodies. The membranes were subsequently washed (TBS/0.1% Tween 20), incubated with horseradish peroxidase-conjugated secondary antibodies, and washed again before being processed with enhanced chemiluminescence plus (Amersham Biosciences, Little Chalfont, United Kingdom). Membranes were probed sequentially for the indicated proteins after washing in stripping buffer [50 mM Glycine (pH 2.5) and 0.05% Tween 20] for 15 min at 55°C. Primary antibodies were procured from the following sources: antiphosphorylated and total MEK (Cell Signaling, Beverly, MA), anti-HA (Sigma, St. Louis, MO), and anti-Lamin A/C (Vector Laboratories, Burlingame, CA) and antibodies against actin, B-Raf, and C-Raf were all obtained from Santa Cruz Biotechnology (Santa Cruz, CA). Horseradish peroxidase-conjugated secondary antibodies were from Jackson Immunoresearch (West Grove, PA).
Proliferation, Apoptosis, and Transformation Assays.
After selection, shRNA-transfected cells were plated onto glass coverslips in media. The next day, cells were incubated with 1 mM BrdUrd (Sigma) for 4 h, and positive nuclei detected with anti-BrdUrd FITC per manufacturers instructions (Roche, Indianapolis, IN). Apoptosis was detected with the In Situ Cell Death Detection kit per the manufacturers instructions (Roche). Three high-powered fields were counted manually to determine the percentage of cells in S phase and the degree of apoptosis, respectively. Nuclear staining was detected with 4',6-diamidino-2-phenylindole (Sigma). Soft agar assays were performed by plating 50,000 cells/60-mm dish in 0.34% agar/media suspension over a solidified 0.5% agar layer. Dishes were replenished every 57 days.
| Results |
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4 +/- 2% and 0.8 +/- 1%, respectively, as compared with 19 +/- 2% for cells transfected with empty vector (Fig. 3C)
These results demonstrated that BRAF-dependent signaling was necessary for the optimal proliferation and survival of human melanoma WM793 cells and dispensable for human fibrosarcoma cells. We wondered whether these effects were specific for the BRAF family member of the Raf kinases or extended to the heretofore more extensively studied homologue, CRAF. We therefore generated CRAF-specific duplex siRNA species and stably expressing shRNA vectors and tested their abilities to suppress CRAF expression and inhibit downstream phosphorylation of MEK. As shown in Fig. 4A
, knockdown of C-Raf protein levels by siRNA followed a slower time course than that of B-Raf and remained more durably suppressed. Notably, however, there appeared to be no effect on MEK phosphorylation despite nearly complete suppression of CRAF. Thus, at least in WM793 melanoma cells, CRAF appears not to be required for MEK activation. A stably expressing shRNA vector directed against the same sequence similarly knocked down CRAF expression with no attendant affect on MEK phosphorylation (Fig. 4B)
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| Discussion |
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Our findings suggest that the BRAFV599E mutation commonly found in malignant melanomas may represent a therapeutic target analogous to BCR-ABL and KIT. We have demonstrated here that knockdown of BRAF expression and inhibition of downstream signaling in WM793 human melanoma cells causes growth arrest and promotes apoptosis under adherent conditions, and prevents colony formation in suspension. These observations have been preliminarily extended to a second melanoma cell line known to contain the BRAFV599E mutation (data not shown). These effects were specific to BRAF, as suppression of CRAF failed to inhibit downstream phosphorylation of MEK and did not appreciably alter the biological properties of these cells. Moreover, these effects were specific to melanoma cells, because human fibrosarcoma cells were impervious to suppression of BRAF expression.
Currently, a Raf kinase inhibitor, BAY 439006 (20) , is undergoing worldwide clinical evaluation in Phase I and II trials in patients with a variety of malignancies, including melanoma. However, BAY 439006 inhibits both B-Raf and C-Raf kinase activities,4 and any beneficial or adverse effects of treatment may therefore result from simultaneous inhibition of both kinases. Our results suggest that targeted inhibition of B-Raf specifically in such tumors may be equally efficacious and perhaps associated with less toxicity.
That CRAF expression was dispensable for the transformed phenotype in human melanoma cells was somewhat surprising. As the first of the three Raf family isoforms identified, a large body of evidence exists exploring the transforming properties of CRAF in mammalian cell systems. These properties, however, are exquisitely dependent on cellular context (7) ; for example, although a constitutively active form of CRAF can readily transform NIH 3T3 cells, it is unable to do so in RIE-1 cells (21) . More recent experiments involving targeted disruption and mutation of Raf isoforms in mice implicate B-Raf as the more potent activator of MEK in many cell and tissue types (22) . The minimal effects on transformation of CRAF suppression in the melanoma cells studied here suggest that this isoform may not always be the predominant effector of MAPK signaling in human cells either.
In summary, we find that suppression of BRAFV599E in WM793 human melanoma cells abrogates their transformed phenotype and conclude, therefore, that agents that specifically inhibit activated BRAF, and not CRAF, might be particularly efficacious in melanomas, and perhaps other tumor types, that harbor activating mutations in this proto-oncogene.
| FOOTNOTES |
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1 Supported in part by NIH Grant R25-CA87812 (S. R. H.), the McCabe Foundation (D. A. T.), the Abramson Cancer Center of the University of Pennsylvania Pilot Projects Program and Grant IRG-78-002-26 from the American Cancer Society (D. A. T.), The Mary L. Smith Charitable Lead Trust (D. A. T.), and NIH Grants CA-25874, CA-47159, CA-76674, and CA-10815 (M. H.). ![]()
2 To whom requests for reprints should be addressed, at University of Pennsylvania, Department of Medicine, Philadelphia, PA 19104. E-mail: tuvesond{at}mail.med upenn.edu. ![]()
3 The abbreviations used are: MEK, mitogen-activated protein kinase kinase; ERK, extracellular signal-regulated kinase; siRNA, small interfering RNA; HEK, human embryonic kidney; HA, hemagglutinin; shRNA, short hairpin RNA; MAPK, mitogen-activated protein kinase; RNAi, RNA interference; TBS, Tris-buffered saline. ![]()
4 G. Bollag, personal communication. ![]()
Received 6/ 2/03. Accepted 7/ 9/03.
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