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1 Center for Human Genomics, Wake Forest University School of Medicine, Winston-Salem, North Carolina;
2 Department of Medicine and Vanderbilt-Ingram Cancer Center, School of Medicine, Vanderbilt University, Nashville, Tennessee;
3 Department of Epidemiology and Public Health and Yale Cancer Center, Yale University School of Medicine, New Haven, Connecticut;
4 Department of Epidemiology, Shanghai Cancer Institute, Shanghai, China
| ABSTRACT |
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34 years) of menstruation (odds ratio, 2.37; 95% confidence interval, 1.184.77). A potential synergistic effect between SNP [C(33390)G] and several steroid sex hormones was observed, and a 34-fold elevated risk of breast cancer was found among women with a CG or GG genotype in SNP [C(33390)G] combined with a high level of steroid sex hormone or a low level of sex hormone binding globulin. Our results are consistent with the hypothesis of a joint effect of estrogen receptor ß sequence variants and endogenous estrogen exposure on breast cancer risk. | Introduction |
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Similar to other complex diseases, it is likely that a combination of genetic susceptibility and exposure to endogenous and exogenous factors increase the risk to breast cancer. Mutations in high penetrance cancer susceptibility genes, such as the BRCA1 and BRCA2 genes, confer a substantially elevated risk; however, they only account for <10% of breast cancer cases in the general population due to their low mutation frequencies. Other genes, particularly those involved in estrogen synthesis, metabolism, and signal transduction, may also be important in the etiology of breast cancer. Estrogen signaling is largely mediated by ERs5
and ß (ESR1 and ESR2); both are members of the nuclear receptor superfamily of ligand-inducible transcription factors. Although the ESR1 and ESR2 genes have a high sequence similarity in their DNA- and ligand-binding domains, they have distinct transcriptional activating function-1 domains and are believed to possess different transcriptional activation properties (4)
. ESR1 and ESR2 have distinct tissue and cell expression patterns. In normal breast tissue, ESR2 is constitutively expressed and is the predominant ER in most cells. Various ESR2 splicing variants have been found, and some of the splicing variants have been shown to encode proteins in both normal and cancerous tissues (5
, 6)
. In breast cancer, the presence of ESRs is correlated with higher responsiveness to hormone therapy and better prognosis. Thus far, the majority of epidemiological association studies have focused on evaluating the association between genetic polymorphisms in ESR1 and breast cancer risk. However, the results for several commonly examined ESR1 genetic polymorphisms have been mixed (7)
. We reported recently some results from a large population-based case-control study among Chinese women in Shanghai, showing that breast cancer risk was associated with the PvuII polymorphism in intron 1 (8)
and a GT dinucleotide repeat polymorphism in the promoter region of the ESR1 gene (9)
. In the current study, we evaluated the hypothesis that certain sequence variants of the ER ß gene (ESR2) are associated with an increased risk for breast cancer, particularly among women who have a high level and long-term of estrogen exposure. This study includes the following components: (a) direct sequencing of the exons, exon-intron junctions, and the promoter region to identify sequence variants of the ESR2 gene among 30 Chinese women; (b) genotyping seven relatively common sequence variants among all of the cases and controls whose DNA samples were available at the time of this study; and (c) assessment of the association of ESR2 sequence variants and their interaction with estrogen exposure on breast cancer risk.
| Materials and Methods |
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The in-person interview was done with the use of a structured questionnaire, which elicited information on demographic features, menstrual and reproductive history, use of sex steroid hormones, medical history, physical activity, alcohol and tobacco use, dietary habits, and family history of cancer. Of the 1459 cases and 1556 controls who completed the in-person interview, morning fasting blood samples were collected from 1193 cases (82%) and 1310 controls (84%). The blood samples were processed to separate plasma within 6 h of collection, and the plasma specimens were immediately stored at -70°C. DNA samples of 2369 subjects were available at the time of the study.
We measured sex steroid hormones in a subset of cases and controls. Cases included in this substudy were those whose blood samples were collected before any cancer treatment. All of the postmenopausal cases and controls and 171 premenopausal case-control pairs were included in the study. For premenopausal women, the cases and controls were matched individually on (+5 years) and their menstrual cycle, which was either within the first 10 days of the menstrual cycle, matching mainly on follicular phase, or within 3 days after the first 10 days, matching either on follicular phase or luteal phase. To control for potential between assay variability, we adjusted the batch of hormone assay in data analysis.
Genotyping Methods.
The PCR products of 9 exons, exon-intron junctions, the promoter region, and 3' UTR of ESR2 were sequenced directly in 15 early onset breast cancer cases and 15 controls. The primers for PCR are available.6
All of the PCR reactions were performed in a 10-µl volume consisting of 30 ng genomic DNA, 0.2 mM of each primer, 0.2 mM of each dNTP, 1.5 mM MgCl2, 20 mM Tris-HCl, 50 mM KCl, and 0.5 unit of Taq polymerase (Life Technologies, Inc.). PCR cycling conditions were as follows: 94°C for 4 min; followed by 30 cycles of 94°C for 30 s, specified annealing temperature for 30 s, and 72°C for 30 s; with a final extension of 72°C for 6 min. All of the PCR products were purified using the QuickStep PCR purification kit (Edge BioSystems, Gaithersburg, MD) to remove dNTPs and excess primers. All of the sequencing reactions were performed using dye-terminator chemistry (BigDye; ABI, Foster City, CA) and then precipitated using 63 ± 5% ethanol. Samples were loaded onto an ABI 3700 DNA Analyzer after adding 8 µl of formamide. SNPs were identified using Sequencher software version 4.0.5 (Gene Codes Corporation).
SNP genotyping was performed at the Center for Human Genomics, Wake Forest University School of Medicine. All of the investigators at Wake Forest University were blinded to the case-control status. To ensure the quality of genotyping, each 96-well DNA plate was embedded with two duplicates of our study subjects, two duplicates of Centre dEtude du Polymorphisme Humain controls (134702), and one water blank. All of the duplicates were later determined to be identical for all seven of the SNPs, and no genotype was observed for any of the blanks. SNPs were genotyped using the MassARRAY system (SEQUENOM, Inc., San Diego, CA). PCR reactions were performed in a total volume of 5 µl with 10 ng of genomic DNA, 2.5 mM of MgCl2, 0.1 unit of HotStarTaq polymerase (Qiagen Inc., Valencia, CA), 200 µM of dNTP, and 200 nM of primers. The PCR reactions started at 95° for 15 min, followed by 45 cycles of 95° for 20 s, 50° for 30 s, and 72° for 1 min, with a final extension of 72° for 3 min. The homogenous Mass Extend (hME) reactions were performed in a total volume of 9 µl with 50 µM each deoxynucleotide triphosphate/dideoxynucleotide triphosphate (d/ddNTP), 0.063 µ/µl of Thermo Sequenase (both from SEQUENOM, Inc.), and 600 nM of extension primers. The cycling conditions were 94° for 2 min, followed by 55 cycles of 94° for 5 s, 52° for 5 s, and 72° for 5 s. After cleaning up the hME reaction products with the SpectroCLEAN, the products were transferred to a SpectroCHIP using SpectroPOINT, and then scanned through SpectroREADER. Genotyping was done using SpectroTYPER.
Measurement of Steroid Hormones and Sex Hormone-Binding Globulin (SHBG).
A detailed description of the measurement of steroid hormones and SHBG was provided elsewhere (3)
. Plasma concentrations of testosterone, estradiol, estrone, estrone sulfate, DHEA-S, and progesterone were measured directly without extraction. Measurement of steroids and SHBG in our study was performed in a reference laboratory, at DSL (Webster, TX). Commercial RIAs from DSL were used for the measurement of steroids; an immunoradiometric assay from DSL was used for SHBG. Technicians who performed the tests did not know the source of the specimens.
Statistical Methods.
Hardy-Weinberg Equilibrium tests for each sequence variant and pair-wise LD tests among all of the sequence variants were performed using the Fisher probability test statistic, as described by Weir (11)
. For each test, 10,000 permutations were performed, and the test statistic of each replicate was calculated. Empirical Ps for each test were estimated as the proportion of replicates that were as probable as or less probable than the observed data, as implemented in the software package Genetic Data Analysis. Various estimates of pair-wise LD such as Lewontins D and the correlation coefficient were calculated using the computer software SAS/Genetics.
Tests for association between sequence variants and breast cancer were performed by comparing the allele frequencies between cases and controls in a
2 test with 1 degree of freedom using the computer software SAS/Genetics. Risk genotypes were arbitrarily defined based on the alleles that were more common in cases than in controls and assuming a dominant model; i.e., homozygous and heterozygous variant alleles as risk genotypes, and homozygous nonrisk allele as a reference genotype. The choice of dominant models was primarily because of the few homozygous risk allele carriers in this population. Estimates of RR were calculated and adjusted for potential confounders.
Association between the haplotypes of the six SNPs and breast cancer risk was also performed using a score test developed by Schaid et al. (12) , as implemented in the computer program HAPLO.SCORE.7
For each steroid hormone, subjects were classified into low or high levels based on the pre- or postmenopausal specific median levels. Years of menstruation were calculated for postmenopausal women (age at menopause - age at menarche), and premenopausal women (age at diagnosis - age at menarche for cases, or age at interview - age at menarche for controls).
| Results |
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15% [T(-11891)C, C(14206)T, G(25652)A, A(50766)G, G(50995)A], as well as the synonymous change C(33390)G, were genotyped among the 2369 study subjects. All of the SNPs were in Hardy-Weinberg equilibrium in both cases and controls. There is strong LD between all pairs of SNPs, with estimates of D between 0.891.00 (data not shown). The genotype frequencies of these SNPs in all of the cases and controls, as well as in pre- or postmenopausal women, are presented in Table 3
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34 years). This group included 315 premenopausal and 548 postmenopausal women. Stronger evidence for association was observed for the SNP C(33390)G in this subset of women after adjusting for menopausal status, age, age at first birth, age at menarche, BMI, and family history (Table 4)
36 years), carriers of these risk genotypes of the SNP C(33390)G (CG or GG) had a RR of 3.62 (95% CI, 1.2610.37; P = 0.01) for breast cancer, compared with women with the nonrisk genotype (CC).
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| Discussion |
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B in the absence of DNA binding (18, 19, 20, 21)
, or crosstalk with proteins in other signaling pathways such as raf-mitogen-activated protein kinase signaling and phosphatidylinositol 3'-kinase/Akt signaling pathways via nongenomic effects (4
, 22) .
Most of the previous studies have focused on ER
(ESR1), and several epidemiological studies have shown that genetic polymorphisms in the ESR1 gene may be associated with breast cancer risk (9
, 10 , 23)
. The importance of ESR2 in breast cancer has not been recognized until very recently (24)
. ESR2 and ESR1 have distinct cellular distributions, regulate separate sets of genes, and oppose each others actions when regulating some genes. ESR2 is widely expressed in both normal and malignant breast, and there are proliferating cells in the breast that express ESR2. Considering the fact that only a subset of women who have a high level or long-term estrogen exposure develop breast cancer, it is possible that the risk of breast cancer may be modified by polymorphisms in genes, such as ESR2, that are involved in the regulation of estrogen effect in breast tissues. The results of this study appear to be consistent with this hypothesis.
However, caution should be taken when interpreting our findings. In particular, type I errors are a concern in association studies of genetic polymorphisms, given the fact that multiple comparisons are often made. It is difficult, however, to adjust the Ps for multiple comparisons in this study, because these sequence variants are not independent due to strong LD. The hormone levels are not independent either, with significant interclass correlation coefficients. In addition, because the functional relevance of the polymorphisms evaluated is unknown, additional epidemiological studies and functional studies are needed.
Our results are also susceptible to multiple sources of measurement variation associated with steroid hormones. However, we have paid particular attention to minimize such random variation by using an individual matched study design that enhances the comparability between cases and controls, as well as by minimizing the variability of laboratory testing from batch to batch (between-assay variation).
At present, the mechanism by which the SNP C(33390)G interacts with hormones and affects breast cancer risk is unknown. The observed association may be due to a causal effect of the SNP or through other as yet unknown flanking sequence variants in LD with this SNP. Although C(33390)G is a silent synonymous change, results from multiple studies have shown that synonymous changes may inactivate genes by inducing the splicing machinery to skip the exons (25, 26, 27, 28) . In fact, the SNP C(33390)G is located in an exonic splicing enhancer motif (in the binding site for splice factor SC35), and, thus, may affect the accuracy and efficiency of ESR2 pre-mRNA splicing. The C allele of C(33390)G was preferentially found in the SC35 enhancer element at this particular position (has above background frequency in SC35 consensus sequence), whereas the G allele had below background frequency and may have an adverse effect on the splicing efficiency of exon 7. In addition, we observed an association between G allele carriers of the SNP and self-reported fibroadenoma risk in our study (10.5% in 172 cases versus 5.5% in 2140 controls; RR, 2.0; 95% CI, 1.193.38; data not shown), providing additional support for a potential functional impact of this variant.
It is worth noting that the joint effect of higher estrogen levels and ESR2 sequence variants was consistently observed for multiple estrogens and estrogen-related steroids, including DHEA-S. One of the major sources of steroid hormones in women is the synthesis in intracrine tissues from the inactive precursors DHEA and DHEA-S of adrenal origin; this intracrine synthesis is especially important after menopause. The importance of steroid hormones from an intracrine source is illustrated by several clinical trials that describe the benefits of aromatase (which converts androgens to estrones) inhibitors in the treatment of hormone-responsive metastasis (ER+) as well as primary breast cancers in women (29, 30, 31) . Higher circulating DHEA as well as its sulfate conjugate (DHEA-S) provides the peripheral target tissues more estrogen precursor and may lead to higher local estrogen levels. Higher estrogen levels, when conjugated with ESR that has increased activity, can additionally increase the risk of breast cancer. Again, caution should be exercised when interpreting the interaction effect, especially given the small sample size for this particular part of the study.
Our results, if confirmed, may have significant implications in the prevention of breast cancer. Women with the "high-risk" ESR2 sequence variants could reduce their risk for breast cancer by reducing their estrogen levels.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Requests for reprints:Wei Zheng, Center for Health Services Research, Vanderbilt University Medical Center, Medical center East, Suite 6000, Nashville, TN 37232-8300. E-mail: wei.zheng{at}vanderbilt.edu or Jianfeng Xu, Center for Human Genomics, Wake Forest University School of Medicine, Medical Center Boulevard, Winston-Salem, NC 27157. E-mail: jxu{at}wfubmc.edu
5 The abbreviations used are: ER, estrogen receptor; CI, confidence interval; UTR, untranslated region; dNTP, deoxynucleotide triphosphate; DHEA, dehydroepiandrosterone; S, sulfate; DSL, Diagnosed Systems Laboratory Inc.; LD, linkage disequilibrium; RR, relative risk; BMI, body mass index; SNP, single nucleotide polymorphisms. ![]()
6 Internet address: http://www.wfubmc.edu/genomics. ![]()
7 Internet address: http://www.mayo.edu/statgen for the S-PLUS programming language or http://www.wfubmc.edu/genomics for the R programming language. ![]()
Received 7/ 8/03. Revised 8/21/03. Accepted 8/26/03.
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gene and risk of breast cancer: Results from the Shanghai Breast Cancer Study. Cancer Epidemiol. Biomark. Prev., : in press 2003.
gene in relation to breast cancer risk. Cancer Res., : in press 2003.
B binding sites in interleukin-6 promoter inhibition by estrogens. Mol. Endocrinol., 10: 713-722, 1996.
and ERß at AP1 sites. Science (Wash. DC), 277: 1508-1510, 1997.
gene and breast cancer risk. Cancer Lett., 178: 175-180, 2002.[Medline]
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