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1 University of Innsbruck, Department of Internal Medicine, Innsbruck, Austria and 2 University of Texas Southwestern Medical Center, Department of Cell Biology, Dallas, Texas
| ABSTRACT |
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| INTRODUCTION |
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Two mechanisms existing in vivo as well as in vitro have been identified to maintain telomere homeostasis in cells with infinite-replicative potential. Telomerase, a ribonucleoprotein reverse transcriptase that adds repetitive DNA sequences to telomeric ends, is the preferred pathway for cell immortalization (6) . The fact that >90% of human cancer cells in vivo show the presence of telomerase activity suggests the importance of this mechanism for tumor cells to divide without limits (7) . The second mechanism for maintaining telomere length is commonly known as the alternative lengthening of telomeres pathway (ALT; Ref. 8 ). Currently ALT is defined by the lack of detectable telomerase activity plus the capacity of limitless divisions. ALT cells usually exhibit a remarkable heterogeneous telomere length in a given cell, often ranging from >20 kb to <2 kb. ALT cells also contain ALT-associated promyelocytic leukemia bodies (APBs) in about 5% of interphase nuclei. APBs in ALT cells have been shown to contain telomeric DNA, telomere-binding proteins, as well as proteins involved in DNA recombination and replication in conjunction with promyelocytic leukemia protein. There is mounting evidence that the mechanism by which ALT cells maintain their telomeres is based on homologous recombination (9) . Because ALT cells do not have a general defect in the recombination machinery (10) , there may be a telomere-specific recombination defect that allows ALT cells to recombine critically short telomeres to maintain sustained cellular proliferation.
Antitelomerase therapy is a promising approach, which more specifically affects cancer cells (11) . There are many different ways to disrupt enzyme activity or its physiological function. Therefore, one can expect to achieve efficient telomere dysfunction especially if different approaches are combined. Although theoretical, there is concern about the possibility of therapy resistance occurring if cancer cells were to engage the ALT pathway after telomerase inhibition. In the present study, we tested whether a pre-existing mismatch repair (MMR) defect in a colon cancer cell line might facilitate engagement of ALT after the inhibition of telomerase. Mismatch repair proteins inhibit homologous recombination between imperfectly matched sequences (12) , whereas MMR defects increase homologous recombination between diverged sequences (13) . Loss of MMR function in yeast increases the viability of cells lacking telomerase (14) . Thus the focus of the present study was to determine whether MMR insufficiency would facilitate engagement of the ALT pathway to heal critically short telomeres in the absence of telomerase.
Our data show, for the first time, that telomere elongation without the reappearance of telomerase activity can occur in a cancer cell line with a MMR defect when telomerase is inhibited. This ALT-like elongation event is associated with the presence of an ongoing homologous recombination process between sister chromatids [telomeric sister chromatid exchange (T-SCE)], and we now report that T-SCE is a characteristic of all established ALT cells analyzed. Furthermore, cancer cells responding with T-SCE after telomerase inhibition are less tumorigenic in a nude mouse model, which has been shown to be an additional characteristic of ALT cells (15) . In summary, we describe a mechanism of resistance to antitelomerase therapy in the presence of a MMR defect.
| MATERIALS AND METHODS |
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Full-length MSH6 cDNA was kindly provided by J. Jiricny (18) . A 4.2 kb fragment was isolated with BamH I and XhoI from pBluescript hMSH6 and cloned into pWZL-Blast using the same restriction sites. pWZL-Blast hMSH6 was digested with BamH I and SalI and ligated into the pBabe-Puro retroviral vector using the corresponding restriction sites. Expression of MSH6 protein was verified by transient transfection of 10-µg plasmid DNA into HCT 15 cells and subsequent Western blotting.
Adenoviral hTERT infection (kindly provided by Geron Corp.) was done at 30 multiplicity of infections every 4 days on cells at 2nd crisis. Restoration of telomerase activity as well as telomere length and T-SCE was monitored as described below.
Telomere Restriction Fragment (TRF) and Telomere Repeat Amplification Protocol (TRAP) Analysis.
For measuring telomere length, 2 x 106 cells were collected and resuspended in 60 µl of 100 mM NaCl, 100 mM EDTA (pH 8.0) and 10 mM Tris (pH 8.0). Triton X 100 and Proteinase K (Roche) were added to a final concentration of 1% and 2 mg/ml, respectively. After digestion at 55°C for 12 h, proteinase K was inactivated at 70°C for 30 min. Samples were dialyzed for 16 h against a TE buffer [10 mM Tris (pH 8.0), 0.1 mM EDTA (pH 8.0)], and 1 µg of genomic DNA was subjected to digestion with 6 enzymes (AluI, Cfo I, HaeI, Hinf I, MspI, and RsaI) for 6 h. Digested DNA was run on a 1% agarose gel using a Fige Mapper (Bio-Rad, Hercules, CA) alternating from 180 V forward to 180 V backward in decreasing intervals of 0.10.8 s at 14°C. After denaturing (0.5 M NaOH, 1.5 M NaCl) for 20 min, the gel was rinsed in H2O for 10 min, dried at 56°C for 3 h, and finally neutralized (1.5 M NaCl, 0.5 M Tris). After neutralization, hybridization with a P32-labeled (TTAGGG)4 oligonucleotide was performed at 42°C for 16 h. After washing the gel once in 2 x SSC [1x = 0.15 M NaCl, 0.015 M Na citrate (pH 7.0)] for 15 min at room temperature followed by two washes with 0.1 x SSC/0.1% SDS for 10 min at room temperature, the gel was exposed to a phosphor screen and analyzed on Storm 860 Phosphor Imager (Molecular Dynamics, NJ). The mean telomere length was calculated as described previously (19)
using the program Telorun (available at http://www.swmed.edu/home_pages/cellbio/shay-wright/research/sw_lab_methods.htm).
Telomerase activity was measured using a TRAPeze kit (Intergen, Purchase, NY) following the basic protocol of the manufacturer. For each assay, the equivalent of 1000 cells was used, and PCR amplification was done for 30 cycles. At each crisis event, as well as before and after, individual samples were analyzed at least twice under different conditions. The cell number per reaction was increased up to 10,000 cells (1,000, 2,000, 5,000, and 10,000 increments) yielding the same result as shown in Fig. 2A
. Quantitation and visualization of the TRAP gels was done as described previously (20)
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Western Blotting and Immunofluorescence for APB Body Staining.
Nuclear extracts for protein analysis were prepared as described previously (18)
. Total protein concentration was determined using a bicinchoninic acid assay (Pierce, Rockford, IL) according to the manufacturers instructions. A total of 50 µg of nuclear extracts were loaded on a 7% SDS-polyacrylamide gel. After electrophoresis, the proteins were transferred onto a polyvinylidene difluoride membrane for 90 min at 120 V, 4°C following the manufacturers protocol (Millipore, Bedford, MA). After transfer, the membrane was blocked with 5% low fat milk phosphate buffered saline + 0.05% Tween for 1 h at room temperature. The primary antibody to detect MSH6 was used at a dilution of 1:200 in blocking buffer and incubated for 16 h at 4°C (mouse monoclonal; BD Transduction Laboratories, San Diego, CA). After three washes with phosphate buffered saline + 0.05% Tween the secondary antimouse antibody conjugated with alkaline phosphatase was applied for 1 h at room temperature at a dilution of 1:9000 (Amersham, Little Chalfont, Buckinghamshire, United Kingdom). A conventional chemiluminescence system was used to visualize proteins following the manufacturers instruction (Pierce).
For detection of APB bodies, cells were grown on cover slips at 37°C for 24 h. The staining procedure was performed as described previously (23) using mouse antipromyelocytic leukemia protein (Santa Cruz Biotechnology, Santa Cruz, CA) and rabbit antihuman TRF2 (Santa Cruz Biotechnology). Visualization was done by incubation with fluorescein-conjugated goat antimouse and rhodamine-conjugated donkey antirabbit secondary antibodies (Molecular Probes, Leiden, the Netherlands). Counterstaining was performed with 4',6-diamidino-2-phenylindole (Vector Laboratories) and images were acquired on a Zeiss Axioplan 2 microscope.
In Vivo Tumor Formation.
Athymic nude mice were purchased from Harlan Sprague Dawley Inc. and kept and used in accordance with institutional guidelines. To produce tumors, 5 x 106 cells grown in log phase were washed in PBS and resuspended in 200 µl. Cells (5 x 106) were injected into each flank. There were no signs of cell death, and cells grew at the same proliferation rate at the time of injection. After sacrificing the animal, tumor volume was calculated according to the following formula: 0.5 x (length) x (width)2.
| RESULTS |
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1 PD/day) emerged. Telomere length analysis immediately after PD 36 showed a telomere elongation from 2.6 kb to a median length of 5.1 kb with the appearance of a discrete band at
9 kb. Cells were followed through crisis as a population. Fluctuation analysis to determine the frequency of this event showed that approximately 1 in 3000 cells were able to escape 1st crisis. The cellular proliferation rate after 1st crisis was approximately 1 PD/1.5 days accompanied with ongoing telomere shortening. At PD 107, when median telomere length was
3.0 kb, a 2nd crisis event occurred (with the same phenotype and proliferation rate decrease as during 1st crisis except for being noticeably milder). After 7 days, foci of rapidly dividing cells appeared with a frequency of 1 in 200 cells. TRF analysis after PD 107 was distinctively different from 1st crisis. A much smaller telomere elongation, only to 3.7 kb, was measured with the occurrence of an additional high molecular weight band at
16 kb. After the 2nd crisis, the length of the short telomeres stabilized whereas long telomeres continuously shortened, with both fractions merging toward the end of the experiment. Southern blot analysis for the dominant-negative hTERT verified that there was no cellular contamination and that the original insertion site persisted throughout the experiment (data not shown).
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Telomerase Activity During Two Crisis Events in an MSH6 / Cell Clone.
To analyze the nature of the two-telomere elongation events shown in Fig. 1A
, we performed telomerase activity (TRAP) assays at each time point when TRF analysis was done. As illustrated in Fig. 2A
, inhibition of telomerase activity by expression of a dominant-negative hTERT was robust (up to 127 PDs) with residual levels ranging from <0.51.1% compared with the parental cell line. Notably, the two crisis events were not associated with detectable up-regulation of telomerase activity but rather with the same levels as observed during the period of telomere shortening. However, after PD 127 up-regulation of telomerase, activity appeared with a constant increase in activity toward the end of the experiment. To increase telomerase inhibition, we infected cells before as well as immediately after 2nd crisis with a second retrovirus encoding for a dominant-negative hTERT. In both cases the reappearance of telomerase activity could not be prevented, although Southern blot analysis did not show gene amplification as being the cause for telomerase reappearance (data not shown). Most other tested HCT 15 clones expressing a dominant-negative hTERT showed strong telomerase expression of cells emerging from crisis and did not show telomere length fluctuations as shown in Fig. 1A
(Fig. 2B)
. Because of the reappearance of telomerase, telomeres were stabilized and maintained at a constant length beyond the point of crisis. In addition to following HCT 15 cell clones with inhibited telomerase activity (n = 5), we also analyzed colorectal cancer cell lines with other MMR defects. Neither clones of cells with hMSH2 / (Lovo, n = 3) or human mutL homolog 1 / (HCT 116, n = 3) nor cancer cells with a wild-type MMR phenotype (SW 480, n = 2) showed the same telomere length kinetics as shown for the HCT 15 cells. For all other clones, either cell death and loss of the culture or reappearance of telomerase activity occurred as a consequence of crisis.
Telomeric Recombination between Sister Chromatids (T-SCE) before and after Crisis.
To investigate whether telomeric recombination was associated with this telomere elongation event, we applied a CO-FISH analysis to determine the presence of telomeric sister chromatid exchange within telomeres (Fig. 3A)
. After DNA replication in the presence of bromodeoxyuridine and 5-bromodeoxycytidine, newly synthesized leading and lagging daughter strands are present on different chromatids at each end of the chromosome. These strands can be removed by nicking the bromodeoxyuridine- and 5-bromodeoxycytidine-containing DNA by UV irradiation in the presence of Hoechst 33258 and Exonuclease III digestion, leaving the parental strands intact. Hybridization with a strand-specific probe [e.g., a FITC-conjugated (TTAGGG)3] will then only give a signal on one of the two-paired chromatids at each end. If a sister chromatid exchange event has occurred within the telomeric sequences (T-SCE) both DNA strands are partially composed of parental and newly synthesized DNA, so that both sister chromatids will anneal to a single strand-specific probe. Applying this technique, we found that in a variety of different human ALT cell lines, T-SCE was present in 100% of the metaphases analyzed whereas T-SCE was universally missing in human telomerase-positive cells (Table 1)
. Inhibition of the ALT pathway by introducing telomerase exogenously strongly reduces all ALT-typical features in VA13 cells as reported previously (23)
. In addition, we found that T-SCE in VA13 +hTR/hTERT was drastically reduced in frequency and affected only 12 chromosomal ends per cell (data not shown). Fibroblasts in patients with conditions associated with an increased rate of normal sister chromatid exchange (e.g., Bloom or Werner-syndrome display only very small increased frequencies of T-SCE), suggesting that those factors affecting general SCE do not have a great effect on telomeric sequences (Table 1)
. Elongation of the shortest telomeres in ALT cells by telomerase, or the absence of critically short telomeres in telomerase-positive cells may suppress T-SCE by removing a trans-acting T-SCE signal. We then compared telomeric sister chromatid exchange in a telomerase-reverting HCT 15 control clone to the clone with ALT characteristics described in Figs. 1
and 2A
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A different picture was observed for the cell clone showing telomere elongation but lacking the reappearance of telomerase activity throughout two crisis events. Cells analyzed with CO-FISH immediately after the 1st crisis, when a telomere elongation event had already occurred, showed no T-SCE in 13% of the metaphases analyzed. However, 87% of metaphases exhibited T-SCE (with 4060% of the chromosomes per metaphase being affected), indicating an ongoing telomeric recombination process even after the cells emerged from crisis (Fig. 4A
, only leading strand hybridization shown). A similar picture was found for cells immediately after the 2nd crisis, which generated the distinct high molecular weight DNA band of approximately 16 kb. In these cells, telomeric recombination was present after crisis in 60% of the metaphases analyzed, also involving the chromosomal end with the long telomere (Fig. 4B
yellow colocalization signal of leading and lagging strand). In addition to CO-FISH, staining for APBs was done at various population doublings throughout the course. APB bodies showing colocalization of promyelocytic leukemia and TRF2 were not found at either 1st or 2nd crisis (data not shown).
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1000 cells went into 1st crisis. Notably twice as many colonies could be generated for the control infection with the empty vector than for the MSH6 infection. After the colonies emerged from 1st crisis, cells were harvested for TRF, TRAP, and Western analysis. Clones infected with the MSH6-overexpressing vector as well as control-infected cells went through 1st crisis, showing the same pattern of telomere elongation followed by telomere shortening as shown in Fig. 1A
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| DISCUSSION |
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Our knowledge of telomere length kinetics in the absence of telomerase activity and subsequent engagement of the ALT pathway comes primarily from work in yeast. For yeast, two different phenotypes of telomerase-independent survivors have been described. Type I survivors are characterized by amplification of subtelomeric repeats (Y' elements) flanking short stretches of G-rich telomeric repeats. In contrast, type II survivors show a broad range of telomere lengths more reminiscent of the ALT phenotype in human cells (26) . The fact that both classes of survivors are dependent on radiation sensitive protein 52 (Rad 52) function stresses the role of homologous recombination in these survivors. Lundblad and Blackburn (27) proposed a model in which short telomeres produced by the absence of telomerase become more recombinogenic, and that recombination occurs in a burst that is triggered by critically short telomeres. This model is supported by several recent studies (14 , 28) . Short telomeres in Sacchromyces cerevisiae maintained by a partly active telomerase showed vastly up-regulated recombination rates of a marker gene placed in the subtelomeric region, resembling the amplification of Y'elements in type I survivors of yeast. Looking at type II survivors in yeast, Teng et al. (29) found that gradual telomere shortening in precrisis cells was followed by abrupt elongation events, which were associated by an improved growth rate of the culture. A similar observation with regard to telomere kinetics was made in an established human ALT cell line (30) . Marked telomeres showed gradual shortening followed by a sudden elongation event.
We cannot rigorously rule out a short burst of telomerase reactivation when the cells reached crisis. However, barely detectable telomerase levels were identical before and after each crisis event, and no obvious telomerase up-regulation was seen despite careful analysis. It is therefore unlikely that telomerase is the cause for the observed telomere elongation. Overexpression of telomerase by adenoviral infection of cells during 2nd crisis resulted in a different type of telomere elongation. T-SCE as well as the distinct high molecular weight band formerly observed after 2nd crisis was no longer present, suggesting that telomerase activity inhibited recombination. In addition, the persistence of telomeric sister chromatid recombination even after cellular crisis compared with a telomerase-dependent control clone argues for a telomerase-independent recombination-based mechanism. This is even more emphasized by the observation that T-SCE is tightly associated with the presence of an ALT phenotype. The reason why we did not observe a complete engagement of the ALT pathway in its classical definition is most likely attributable to the eventual reappearance of telomerase. Once telomerase was present, telomeres stabilized and T-SCE vanished. The lack of APB bodies could be attributable to the same reason, because these structures have been described only in fully developed ALT cells.
The precise role of a MMR defect for the engagement of this ALT-like telomere elongation remains unclear. The concept that a hyper-recombinogenic phenotype, which is associated with the MMR defect, facilitates ALT engagement is supported by recent work in yeast (14)
. In this study Rizki and Lundblad observed that a double knock out for telomerase (est2-
) and msh2 (msh2-
) increases the survival of telomerase-deficient cells. They also observed an immediate growth advantage of the msh2-
and est2-
yeast strain over the est2-
strain alone, suggesting the result was not attributable to a secondary consequence of the mutator phenotype associated with the msh2-
defect. Although the data obtained from the yeast system argue against any causal role for the mutator phenotype, this cannot be unambiguously translated into the human system at this point. The infrequent appearance of the phenomenon described for other MMR-deficient cell clones suggests that MMR causes a secondary alteration that facilitates ALT-like telomeric recombination associated with the presence of T-SCE. This notion is even more strongly supported by the fact that MSH6 deficiency is associated with a strong mutator phenotype (18)
. If this would be the case, MSH6 substitution would not abolish the ALT-like behavior of the cells we describe in this present work. Unfortunately, overexpression of MSH6 was associated with cellular toxicity as reported previously, and therefore systems providing a more subtle transcriptional regulation of MSH6 will be needed (18)
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It has been shown that ALT cells exhibit a much less tumorigenic potential compared with telomerase-positive cells (15) . This lack of tumor formation was overcome by introducing the Ras oncogene together with hTERT, whereas Ras alone did not restore the tumor formation potential. In addition, recent work by Chang et al. (31) provides evidence that ALT-positive tumors derived from telomerase knockout mice are unable to form lung metastases in a mouse model. Reconstitution of telomerase in these ALT-positive tumors rendered these cells competent to form metastatic lesions. Together these data suggest that the ALT pathway, at least for some cell lines, does not functionally substitute for telomerase as far as tumorigenicity and metastatic potential is concerned. A likely explanation is the presence of telomere dysfunction in ALT cells caused by a number of critically short telomeres in these cells (23) . The tight correlation between T-SCE and the ALT pathway, as shown in this present work, makes telomeric sister chromatid exchange a new cytogenetic ALT marker. The data also suggest that T-SCE might be a response to the DNA damage signal from dysfunctional short ends. Importantly, T-SCE can occur in non-ALT cells. T-SCE was observed before crisis in a clone of HCT cells with a dominant-negative hTERT that eventually escaped crisis by re-expressing telomerase activity. This demonstrates that T-SCE is not equivalent to ALT, is probably not directly involved in ALT-like telomeric elongation events, but rather reflects a process that is occurring at a very highly elevated rate in ALT cells that might contribute indirectly to telomere elongation. Its very strong correlation with ALT nonetheless makes it a useful marker for ALT cells. Our results from tumor formation experiments demonstrate, similar to previous reports, that cancer cells emerging from crisis with T-SCE being present induce smaller tumors compared with the telomerase-positive parental cells. More importantly abolishing T-SCE via overexpression of telomerase restores the tumor formation capacity.
Our data show that an ALT-like telomere elongation is possible when telomerase is inhibited in conjunction with an MSH6 defect. Although these escaping cancer cells might not be as robust as their telomerase-positive counterparts, this observation has an impact on therapeutic concepts involving telomerase inhibitors. The possibility of telomere elongation without significant telomerase activity could make some human malignancies less suitable for telomerase-inhibitory therapeutics and hence could be a drug resistance mechanism. Importantly, future experiments using this model system for engaging ALT may provide insights and screening strategies for repressing this pathway.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Requests for reprints: Jerry W. Shay, University of Texas, Southwestern Medical Center, Department of Cell Biology, 5323 Harry Hines Blvd., Dallas, Texas 75390-9039. Phone: (214) 648-3282; Fax: (214) 648-8694; E-mail: jerry.shay{at}utsouthwestern.edu
Received 1/31/04. Revised 3/30/04. Accepted 4/ 2/04.
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