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Molecular Biology, Pathobiology and Genetics |
Gene as a Molecular Indicator of Metastasis in a Wide Range of Human Cancers
1 Research Service, Department of Veterans Affairs Palo Alto Health Care System, Palo Alto, CA; 2 Second Hospital of Nanjing City, Nanjing, China; and 3 Institute of Medicinal Biotechnology, Chinese Academy of Medicinal Sciences, Beijing, China
Requests for reprints: Jingwen Liu (154P), Veterans Affairs Palo Alto Health Care System, 3801 Miranda Avenue, Palo Alto, CA 94304. Phone: 650-493-5000, ext. 64411; Fax: 650-849-0251; E-mail: Jingwen.Liu{at}med.va.gov or Jian-Dong Jiang, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences, Peking Union Medical College, 100050 Beijing, China. Phone: 86-10-63165290; Fax: 86-10-63017302; E-mail: jiandong.jiang{at}mssm.edu.
| Abstract |
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(SNCG) is abnormally expressed in a high percentage (67.5%) of tumor tissues of diversified cancer types, including liver, esophagus, colon, gastric, lung, prostate, cervical, and breast cancer, but rarely expressed in tumor-matched nonneoplastic adjacent tissues (0.6%). Expressions of SNCG protein in different cancer types all display stage-specific patterns of very low expression in stage I and high expression in stages II to IV. Importantly, we observe a strong association between SNCG protein expression in primary tumors with distant metastasis in patients regardless of the cancer type (60.6%, P < 0.001). By performing genomic sequencing and methylation-specific PCR assays, we identify an inclusive demethylation of CpG sites within the CpG island of SNCG gene in every tumor sample (100%) across all cancer types, illustrating a universal loss of the epigenetic control of SNCG gene expression in tumors and further demonstrating that the demethylation of SNCG CpG island is primarily responsible for the aberrant expression of SNCG protein in cancerous tissues. These new findings strongly suggest that reactivation of SNCG gene expression by DNA demethylation is a common critical contributing factor to malignant progression of many solid tumors and its expression in primary carcinomas is an effective molecular indicator of distant metastasis. Our studies also suggest that the methylation status of SNCG gene can be used as a sensitive molecular tool in early detections of tumorigenesis. | Introduction |
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Synuclein-
(SNCG) is a member of a neuronal protein family synuclein, consisting of synuclein-
(SNCA), synuclein-ß (SNCB), and SNCG (1113). Although this group of proteins is abundantly expressed in brain tissues, their normal cellular functions have not been clearly defined, which is in contrast to the well-known pathologic roles of synucleins in a number of human diseases. SNCA is the major component of Lewy bodies in sporadic Parkinson's disease and in a subtype of Alzheimer's disease (14, 15). Mutations of SNCA have been detected in several familial cases of Parkinson's disease (16). SNCA peptide has also been identified as the nonamyloid component of amyloid deposition, the hallmark of Alzheimer's disease (17, 18). Interestingly, SNCG shares 54% sequence identity with SNCA (19); SNCG is not clearly involved in neurodegenerative diseases. Instead, SNCG has been implicated in human neoplastic diseases, particularly in breast cancer and ovarian cancer. Several studies have shown that SNCG was abnormally expressed in a high percentage of advanced and metastatic breast tumors but not in normal or benign breast tissues (1921). When overexpressed, SNCG stimulates proliferation and induces metastasis of breast cancer cells (2226). Analysis of breast tumor samples did not identify any sequence variation of SNCG gene from its original normal neuronal environment and no gene amplification was detected either (27), suggesting that transcriptional activation could account for its abundant expression in breast cancer cells. By analyzing the promoter region of SNCG gene and conducting genomic sequencing, we had shown that the loss of methylation control in a CpG island located in exon 1 of SNCG was primarily responsible for the aberrant expression of this neuronal protein in breast carcinoma (28) and in some ovarian carcinomas (29). Further investigations aimed to elucidate the oncogenic functions of this protein have revealed that SNCG overexpression in breast cancer cells resulted in a compromised mitotic checkpoint (30), increased resistance of tumor cells to antimicrotubule drugs (31), and accelerated rate of chromosomal instability (32). Because the mitotic checkpoint control is critical for every cell type to maintain its genetic stability (33, 34), the inhibitory effects of SNCG on mitotic checkpoint function imply that the abnormal expression of SNCG in human tissues outside the neuronal system could have general tumorigenic effects and SNCG may play a profound oncogenic role in human cancers beyond breast or ovarian carcinogenesis. However, SNCG protein expression and methylation status of the CpG island in other human cancers have not been carefully examined. Furthermore, the initial observation of augmentation of tumor cell metastasis by SNCG expression obtained in an animal model of breast cancer (22) has not been corroborated by clinical evidence.
In the current study, we independently examined the protein expression and the methylation status of SNCG gene in 320 patient samples of malignant and matched nonneoplastic adjacent tissues derived from eight diversified cancer types, including male-specific prostate cancer, female-specific cervical cancer, four cancer types in digestive system (liver, esophagus, stomach, colon), and a respiratory-specific cancer (lung cancer); patient samples of breast carcinoma were also included in this study to serve as positive controls. The relationships between SNCG protein expressions with all clinicopathologic features of cancer patients were further analyzed in great details to identify significant correlations.
| Materials and Methods |
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Immunohistochemistry. Tissue samples were stained within 1 week of sectioning. Slides of 4 µm sections were deparaffinized with xylene. Following rehydration in distilled water, antigen retrieval was accomplished by heat with EDTA (pH 8.0; Zymed, San Francisco, CA). Endogenous peroxidase activity was blocked by incubating in 3% hydrogen peroxide at room temperature for 5 minutes. Nonspecific antibody binding was blocked with 5% goat serum for 10 minutes at room temperature. Slides were then incubated with goat anti-SNCG polyclonal antibody (sc-10699, Santa Cruz Biotechnology, Santa Cruz, CA) at 1:300 dilution at 4°C overnight. Following three washes with PBS, slides were incubated with biotin-labeled rabbit anti-goat IgG (Histostain-Plus kit, 50-232, Zymed) for 30 minutes at 37°C. After three washes of PBS, the staining was accomplished by using 3,3'-diaminobenzidine + Substrate Chromogen Systems (DAKO Corp., Carpinteria, CA). Sections were counterstained with hematoxylin, dehydrated, and mounted. Positive cases were defined by the presence of intracellular staining with red/brown color in malignant cells, as seen in positive controls (paraffin sections from stage III breast cancer patients; ref. 20). Negative cases were defined by the absence of specific intracellular staining, as seen in negative controls, consisting paraffin sections from normal tissues of liver, esophagus, colon, breast, stomach, cervix, and prostate.
A semiquantitative scoring system based on the average number of SNCG-positive cells from five randomly chosen fields of x400 was used to grade the expression levels regardless of the staining intensity. The mean value (n) was used to grade the expression levels: +, 0 < n
30; ++, 30 < n
50; +++, 50 < n
80. Samples were evaluated under light microscopy independently by two pathologists without prior knowledge of the patients' clinical data.
Nested methylation-specific PCR and genomic sequencing of bisulfite-modified DNA. Fifteen 10 µm consecutive sections were cut from each formalin-fixed, paraffin-embedded tissue block and were incubated with 1 mL xylene at 40°C for 2 hours, washed with ethanol, and centrifuged to remove the supernatant. The procedure of deparaffinization was repeated once and tissues were dried before DNA extraction. DNA was isolated by using DNA isolation kit (Promega, Madison, WI) following the protocol of the manufacturer. After elusion from the DNAeasy Mini spin column, samples were dried by lyophilization. For each sample, genomic DNA was resuspended in 30 µL Tris-EDTA buffer and 15 µL DNA was diluted by distilled water to a volume of 50 µL and was denatured by NaOH for 15 minutes at 37°C, followed by the treatment of sodium bisulfite at 50°C for 16 hours (35). The modified DNA was purified using DNA cleanup kit (Promega) in a total volume of 20 µL, and 4 µL were used for genomic sequencing and nested methylation-specific PCR (MSP). Sequences of primers used in this study are listed in Table 1. For the first-step PCR, the modified DNA was amplified with primer SNCG-S2F and SNCG-S2R covering the region 275 to +140 that includes the entire CpG island with 15 CpG sites. PCR reactions were done in a volume of 25 µL containing 1x PCR buffer, 1x TaqMaster PCR Enhancer, 0.125 mmol/L deoxynucleotide triphosphate, 25 pmol of each primer, and 1.25 units of platinum Taq polymerase (Eppendorf). The reactions were carried out at 94°C for 1 minute to activate the hot start enzyme, then 30 cycles of 94°C for 30 seconds, 58°C for 30 seconds, and 72°C for 30 seconds, and a final extension at 72°C for 5 minutes. Subsequently, the first-step PCR product in the reaction tube was diluted 1:10 and 4 µL was used as DNA template for the nested PCR reactions for genomic sequencing and for MSP. For genomic sequencing, the PCR using the primer SNCG-S5F and SNCG-S5R was conducted for 30 cycles with the annealing temperature of 60°C. The 361 bp PCR product covering the region 232 to +129 was gel purified and ligated into pCR2.1-TOPO cloning vector (Invitrogen, Carlsbad, CA). After transformation, plasmid DNAs were isolated from individual colonies and subjected to sequencing using M13 as sequencing primer to obtain the entire map of SNCG CpG island.
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Statistical analysis. The probabilities of SNCG protein expression, distant metastasis, as well as nonneoplastic adjacent tissue demethylation for the overall patients were compared between different sample groups (tumor tissue versus nonneoplastic adjacent tissue; SNCG protein positive versus SNCG protein negative) by means of the
2 test. The probability of SNCG protein expression, stages, as well as lymph node invasion for each cancer type were compared between tumor tissue and nonneoplastic adjacent tissue using Fisher's exact test with correction for continuity, as the sample size was too small to use the normal approximation to the binomial distribution.
| Results |
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2 test to evaluate the relationship between SNCG protein expression with the methylation status, we found a close association between the SNCG protein expression in tumor samples with the demethylation of SNCG CpG island in tumor adjacent nonneoplastic tissues (P < 0.001). Among 108 tumor samples that expressed SNCG protein, partial demethylation occurred in 45 samples of their nonmalignant counterparts (41.7%). In contrast, SNCG demethylation was detected only in 3 of 52 nonneoplastic adjacent tissue samples (5.7%) to which their matched tumor samples were negative in SNCG protein expression. Assessment of methylation patterns of SNCG CpG island in different tissues by genomic sequencing. To obtain detailed methylation versus demethylation patterns of SNCG CpG island in different malignant and nonmalignant tissues, with the guidance of MSP results, modified DNAs of two pairs of patient samples from each cancer type that displayed demethylated SNCG in tumor and methylated SNCG in matched nonneoplastic adjacent tissue were selected for genomic sequencing (Fig. 3A). Nearly all CpG sites within the CpG island of SNCG were demethylated in all cancer types; conversely, almost all CpG sites were remained methylated in the matched normal tissues with an exception of normal breast tissues that showed a pattern of partial demethylation at certain CpG sites, consistent with our previous findings (28, 29). From these sequencing results, we conclude that SNCG CpG island is fully methylated in normal tissues of liver, esophagus, prostate, cervix, stomach, colon, and lung but partially methylated in breast tissue. Tumors from these tissues contain completely demethylated SNCG.
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Associations of SNCG protein expression with disease progression and distant metastasis. In a previous study, the expression of SNCG in MDA-MB435 cells resulted in a massive metastasis of breast cancer cells to lung in nude mice (22), indicating a positive role of this oncogene product in metastasis. To obtain direct clinical evidence, we analyzed clinicopathologic features of all patients with relationships to SNCG protein expression status (Table 3). Significant correlations of SNCG protein expression with advanced stages of tumor were observed in all cancer types. In liver, esophagus, prostate, cervical, breast, and lung cancers, patients with diseases of stages II to IV all expressed SNCG protein (100%). SNCG positivity was also high at 81.2% and 78.5% in gastric and colon cancers. In contrast, SNCG protein was only detected in
20% of patient samples with diseases at stage I or stage 0 from esophagus, prostate, breast, gastric, or colon cancers. A relatively higher percentage (50%) of stage I samples from cervical cancer (6 of 12) and liver cancer (1 of 2) expressed SNCG protein.
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| Discussion |
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We show that SNCG protein is highly expressed in diversified cancer types, including the female hormonesensitive cervical and breast cancers, male hormonesensitive prostate cancer, four cancer types of the digestive system, and lung cancer, the leading cause of mortality in both men and women. It is noteworthy that during the course of this investigation, SNCG protein expression in gastric cancer (36) and pancreatic cancer (37, 38) were also detected by independent research groups. Combined with previous studies in ovarian cancer thus far (20), the abnormal expression of SNCG is clearly linked to 10 different malignant diseases. Although the percentages of SNCG-positive cases differ among different tumor types, the strong association of SNCG expression with higher stages of disease is a common feature in this study and in previous reports. Our results are consistent with the notion that SNCG promotes disease progression (19, 22). How SNCG induces disease progression in different cancer types remains elusive. In breast cancer cells, SNCG has been shown to act as a chaperon for estrogen receptor and stimulate estrogen receptor-
signaling pathway that leads to cell proliferation (25, 26). On the other hand, we have shown that the inhibitory effects of SNCG on mitotic checkpoint function are mediated through the mitotic checkpoint kinase BubR1 and are independent of the expression status of estrogen receptor-
(30). Because synucleins have chaperone-like activities (39), it may interact with different proteins in different cellular background. Identifications of specific cellular targets of SNCG in different tumor types will provide insight to delineate its oncogenic functions in human malignancy.
By utilizing the highly specific method of MSP, we show that the CpG island of SNCG is nearly completely demethylated in every tumor tissue examined in this study, illustrating a universal loss of the epigenetic control of SNCG in malignant tumors regardless of the cancer type. To our knowledge, this is the first example of a complete change in methylation status of a cellular gene in multiple cancer types. In most reported studies, specific alterations in methylation status of a CpG island usually occur in certain percentages of tumors and in limited tumor types (4045). Thus, detection of fully demethylated alleles of SNCG by the powerful MSP method can be used as a sensitive method in early detection to find a small number of malignant cells in morphologically normal tissues before tumors emerge. The lack of SNCG protein expression in some tumor tissues with demethylated gene suggests that demethylation is necessary but may not be the only factor for reactivating the transcription of this tissue-restricted gene, keeping in line with our previous findings in breast cancer cells (28, 29). In addition, our detection of partially demethylated SNCG alleles in tumor neighboring cells in some patient samples may have important clinical implications. It indicates that the abnormal genetic changes have already initiated in the tumor adjacent tissues that were morphologically normal at the time of surgery. Thus, assessment of the SNCG methylation status can also be applied to determine the genetic abnormality in precancer conditions.
Metastasis is recognized as the most important feature of malignant tumors. Metastatic spread strongly reduces the possibility of cure and survival time. Up to date, no definitive judgment can be made about the probability of metastasis from pathologic examination of the surgically removed primary tumor tissues. Molecular markerbased pathologic indications of metastasis have great potentials in the clinical application (46). Whereas a previous study in nude mice had shown that SNCG expression stimulated breast cancer cells to metastasis (22), the direct clinical evidence of a role of SNCG in tumor metastasis was lacking. Our current studies reveal a strong correlation between SNCG expression in primary tumors and distant metastasis in patients of all cancer types. Our findings not only corroborate the data from animal studies to some extent but also further suggest that SNCG expression status can be considered as a pathologic indication to predict the propensity of metastasis to distant organs and aid in guidance for designing optimized and individualized therapeutic regimens for patients when the tumor samples are available after surgeries.
Taken together, our new findings strongly suggest that the loss of epigenetic control of the neuron-restricted expression of SNCG gene is likely a common critical contributing factor to malignant progression of different types of human cancer, and that the strong association of SNCG protein expression in primary carcinomas with distant metastasis marks this protein an effective molecular indicator of tumor metastasis.
| Acknowledgments |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
We thank Dr. Cong Li for her assistance in genomic sequencing, Dr. Paul J. Chiao (University of Texas M.D. Anderson Cancer Center) for his helpful discussions of the immunostaining method for SNCG detection, Dr. Kelvin Lee (Veterans Affairs Palo Alto Health Care System) for his help in statistical data analysis, and Kristopher J. Morrow and Michael Wagner (Medical Media, Veterans Affairs Palo Alto Health Care System) for the help in data presentation.
| Footnotes |
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Received 3/31/05. Revised 5/31/05. Accepted 6/22/05.
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