| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
Priority Reports |
1 Molecular Cytogenetics and 2 Cell Transformation, Section of Molecular Carcinogenesis, and 3 Tissue Resource Laboratory, The Institute of Cancer Research; 4 Academic Department of Urology, The Royal Marsden National Health Service Trust and Institute of Cancer Research, Sutton, Surrey, United Kingdom; 5 Department of Pathology, Erasmus MC-University Medical Center Rotterdam, Daniel den Hoed Cancer Center, Josephine Nefkens Institute, Rotterdam, the Netherlands; and 6 Histopathology, The Royal Marsden National Health Service Trust, London, United Kingdom
Requests for reprints: Janet Shipley, Molecular Cytogenetics, Male Urological Cancer Research Centre, The Institute of Cancer Research, 15 Cotswold Road, Sutton, Surrey SM2 5NG, United Kingdom. Phone: 44-20-8722-4273; Fax: 44-20-8770-7290; E-mail: janet.shipley{at}icr.ac.uk.
| Abstract |
|---|
|
|
|---|
| Introduction |
|---|
|
|
|---|
, which, like KIT, is a tyrosine kinase receptor protein. Activated KIT, KDR, and PDGFRA may all exert their effects through phosphatidylinositol 3-kinase and/or RAS signaling (8). The importance of KIT mutations in tumors, such as gastrointestinal stromal tumors, and the involvement of PDGFRA in the fusion protein associated with idiopathic hypereosinophilic syndrome have led to the use of small molecular inhibitors of KIT and PDGFRA kinase activity in the management of patients (9). As gain and amplification of genes may indicate their specific involvement in tumor development, we have investigated here the potential involvement of KDR, KIT, and PDGFRA in the development of testicular germ cell tumor. Through analysis of a large number of testicular germ cell tumor samples, we exclude amplification of the PDGFRA and KDR genes flanking KIT in some cases and associate amplification and increased expression of KIT with progression to invasive tumor. | Materials and Methods |
|---|
|
|
|---|
Quantitative-PCR analyses. Quantitative PCR and reverse transcription-PCR (RT-PCR) were done using the ABI PRISM 7700 Sequence Detection System according to the instructions of the manufacturer (Applied Biosystems, Foster City, CA).8 Samples were studied at two centers using two different methods.
For 32 seminoma, 27 nonseminoma, and 6 combined tumors, ß2-microglobulin (B2M) was used as the endogenous control in expression studies and hsRBP4 at 2q21 as the endogenous control for genomic quantification as this region rarely shows loss or gain in testicular germ cell tumor samples.9 Expression data were normalized to the commercially available pooled normal testis RNA and genomic data to normal male DNA. Five nanograms of DNA or cDNA were used in 10 µL multiplex PCR reactions using 2x Universal TaqMan Mastermix (Applied Biosystems; part no. 4352042). RNA was reverse transcribed using random hexamers and Superscript II reverse transcriptase (Invitrogen, Carlsbad, CA). Primer and probe sets for the genes KIT, KDR, PDGFRA, and the control B2M were purchased from Applied Biosystems (assays Hs00174029, Hs00176676, Hs00183486, and Hs99999907, respectively).8 Primers and probes were designed according to Applied Biosystems guidelines for genomic analysis of KIT, KDR, PDGFRA, and HsRBP4.10 Both the B2M and HsRBP4 controls used were labeled with Vic and all test sets were labeled with Fam. The quantification of each sample was determined by averaging the results from three separate reactions.
For analysis of the remaining 79 seminoma, 46 nonseminoma, 14 CIS, and 19 normal testis samples, the expression levels were quantified relative to the hypoxanthine phosphoribosyltransferase (HPRT) housekeeping gene primers HPRT 243, 5'-CGT GGG GTC CTT TTC ACC AGC AAG-3', and HPRT 244, 5'-AAT TAT GGA CAG GAC TGA ACG TC-3'. KIT expression was quantified using the primers c-KIT forward, 5'-CTG AAC ACG CAC CTG CTG AA-3', and c-KIT reverse, 5'-AAG CTA CGT TGC TAT TGG GAA T-3'. The PCR reactions were done in a final volume of 25 µL containing cDNA synthesized from 30 ng total RNA, 330 nmol/L primers, and 12.5 µL SYBR green PCR Master Mix (Applied Biosystems). A dissociation curve was run at the end of the reaction for product specificity. Expression data were normalized to the average of 19 normal testis parenchyma samples. Five nanograms of tumor DNA from 79 seminoma, as well as normal reference DNA, were amplified with sequence-tagged site (STS) markers (National Center for Biotechnology Information) within and flanking the KIT gene using real-time quantitative PCR. STS primers centromeric to KIT, but distal to KDR, were SHGC-144275 (UniSTS: 174218) and G16733 (UniSTS: 15362). The STS primer telomeric to KIT, but centromeric to PDGFRA, was SHGC-50974 (UniSTS: 10990). The KIT-specific STS markers used were GDB:250632 (UniSTS:156301), STS-N21003 (UniSTS: 21855), and SHGC4-128 (UniSTS: 79238). The copy number of KIT was calculated using linear regression analysis from an external, commercially available DNA standard curve. The subsequent relative copy numbers were determined by taking the mean value of KIT over the adjacent marker SHGC-50974.
Amplification of KIT determined by fluorescence in situ hybridization. Interphase fluorescence in situ hybridization (FISH) was done on tumor touch imprints from one tumor sample and a normal lymphocyte control as previously described (11). A probe for the centromere of chromosome 4, pG-Xba11/340, and a BAC clone, RP11-586A2, containing the KIT gene were used.
Mutation analysis of KIT. The genomic sequence of exon 17 of KIT was amplified from 31 seminoma and 17 nonseminoma samples by PCR resulting in a 366 bp product.11 PCR products were bidirectionally screened by direct sequence analysis on an ABI3100 sequencer using the ABI PRISM BigDye Terminator v3.1 Cycle Sequencing Kit (Applied Biosystems). Mutations were confirmed by repeat sequencing analysis from an independently amplified reaction. Negative controls (no DNA) and normal controls (pooled normal DNA) were included in every set of amplifications and sequencing analysis.
Analysis of KIT protein expression in carcinoma in situ and adjacent tumor. The expression of KIT was investigated in the six selected paraffin-embedded testicular germ cell tumor sections. Sections were incubated with a rabbit anti-KIT primary antibody (DAKO, Glostrup, Denmark) overnight at 4°C at a 1:500 dilution as previously described (12).
| Results and Discussion |
|---|
|
|
|---|
Quantitative-PCR analyses identified gain of two or more copies of KIT in 21% of seminoma and 9% of nonseminoma based on the generally near triploid status of this tumor type. Significantly, 9 of 11 seminoma cases with gain of copy number showed amplification of only KIT and not the KDR and PDGFRA genes which flank it (Fig. 1A). In keeping with this, analysis of a further 79 seminoma cases showed that 13% of seminoma gained KIT but not the immediately flanking genomic sequences. Interphase FISH was used to confirm KIT amplification in one case and the dispersed and doublet appearance of the signals was consistent with the presence of double minutes. The number of signals was concordant with the quantitative-PCR data (25 copies by FISH and 24 copies by quantitative PCR; Fig. 3). The genomic copy number of KIT was found to be significantly greater in seminoma than in nonseminoma (t test = 4.29, P < 0.001). The specific gain of KIT in some cases, and not the flanking genes or adjacent genomic sequences, is strong evidence for selective involvement of KIT in testicular germ cell tumor, and in seminoma in particular.
|
|
In line with the copy number changes for KIT, KIT expression was found to be significantly different between seminoma and nonseminoma (t test = 6.51, P < 0.001; Fig. 2). This corresponded to a general increase in expression in seminoma relative to normal testis whereas there was a general decrease in expression in nonseminoma samples compared with normal testis. High expression of KIT was identified in one combined tumor and several seminoma without corresponding genomic gain. This suggests that mechanisms other than copy number gain can result in KIT overexpression. Expression of KIT 6-fold greater than that found in normal testis was determined in four malignant teratomas. Strong immunohistochemical staining for KIT has been described in the differentiated teratoma structures of nonseminoma tumors (14). The immunohistochemical staining for KIT was stronger in four seminoma cases with amplification and overexpression of KIT compared with two cases without (Fig. 3).
|
Further evidence for the involvement of KIT comes from the finding of activating mutations, mainly in exon 17, in 1% to 25% of testicular germ cell tumors (35, 18). Four of 31 (13%) seminoma and none of 17 nonseminoma were found to have activating mutations in exon 17. The activating KIT mutations were two D816V, one Y823C, and one N822K. Six of the seminoma samples studied were from individual sporadic bilateral cases, one of which showed an activating mutation of KIT (N822K). This is a similar rate to that observed in a recent study by Rapley et al. (18), but lower than the 93% of bilateral cases reported in which activating codon 816 KIT mutations were suggested to be predictive of developing a tumor in the contralateral testis (4).
The pattern of expression and mutation suggests that increased expression of KIT is not necessarily required in cases with an activating mutation, and it is possible that increased expression of KIT is an alternative way these tumors activate the KIT pathway. No distinct pattern of activation of downstream targets has been determined in cases with or without activating KIT mutations and similar activated levels of Erk, AKT, mitogen-activated protein kinase, and signal transducers and activators of transcription 3 have been recently reported in almost all seminomas and nonseminomas (3, 19). It is possible that alternative receptor tyrosine kinases are also involved.
Specific amplification of KIT and increased expression associated with invasive progression may recapitulate features of KIT signaling pathways important in primordial germ cells for controlling proliferation, migration, and survival (6). The implication and further understanding of the role for KIT in the development of testicular germ cell tumors may provide a target for treatment that is less toxic than current regimens for metastatic seminoma.
| Acknowledgments |
|---|
The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
We thank Martin Pera for providing the cell lines GCT27 and GCT44, and Mariano Rocchi for making the BAC clone available. We also thank Ian Giddings for making our supplementary data available on a website.
| Footnotes |
|---|
8 http://www.appliedbiosystems.com. ![]()
9 Mitelman database at http://cgap.nci.nih.gov/Chromosomes/Mitelman. ![]()
10 Details at http://www.crukdmf.icr.ac.uk/array/array.html. ![]()
11 The primers are described at http://www.crukdmf.icr.ac.uk/array/array.html. ![]()
Received 2/22/05. Revised 6/29/05. Accepted 7/15/05.
| References |
|---|
|
|
|---|
-receptor 1.5 kb transcript, OCT-4, and c-KIT in human normal and malignant tissues. Implications for the early diagnosis of testicular germ cell tumours and for our understanding of regulatory mechanisms. J Pathol 2002;196:46777.[CrossRef][Medline]
This article has been cited by other articles:
![]() |
W. Castillo-Avila, J. M. Piulats, X. Garcia del Muro, A. Vidal, E. Condom, O. Casanovas, J. Mora, J. R. Germa, G. Capella, A. Villanueva, et al. Sunitinib Inhibits Tumor Growth and Synergizes with Cisplatin in Orthotopic Models of Cisplatin-Sensitive and Cisplatin-Resistant Human Testicular Germ Cell Tumors Clin. Cancer Res., May 15, 2009; 15(10): 3384 - 3395. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. PECTASIDES, G. PAPAXOINIS, M. NIKOLAOU, C. VALAVANIS, G. ARAVANTINOS, G. FOUNTZILAS, N. TAMVAKIS, E. PECTASIDES, I. LEKKA, P. ARAPANTONI-DADIOTI, et al. Analysis of 7 Immunohistochemical Markers in Male Germ Cell Tumors Demonstrates the Prognostic Significance of p53 and MIB-1 Anticancer Res, February 1, 2009; 29(2): 737 - 744. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. D. Heaney, M.-Y. J. Lam, M. V. Michelson, and J. H. Nadeau Loss of the Transmembrane but not the Soluble Kit Ligand Isoform Increases Testicular Germ Cell Tumor Susceptibility in Mice Cancer Res., July 1, 2008; 68(13): 5193 - 5197. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. R. Feldman, G. J. Bosl, J. Sheinfeld, and R. J. Motzer Medical Treatment of Advanced Testicular Cancer JAMA, February 13, 2008; 299(6): 672 - 684. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Holtkamp, N. Ziegenhagen, E. Malzer, C. Hartmann, A. Giese, and A. von Deimling Characterization of the amplicon on chromosomal segment 4q12 in glioblastoma multiforme Neuro-oncol, July 1, 2007; 9(3): 291 - 297. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Houldsworth, J. E. Korkola, G. J. Bosl, and R. S. K. Chaganti Biology and Genetics of Adult Male Germ Cell Tumors J. Clin. Oncol., December 10, 2006; 24(35): 5512 - 5518. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Schnittger, T. M. Kohl, T. Haferlach, W. Kern, W. Hiddemann, K. Spiekermann, and C. Schoch KIT-D816 mutations in AML1-ETO-positive AML are associated with impaired event-free and overall survival Blood, March 1, 2006; 107(5): 1791 - 1799. [Abstract] [Full Text] [PDF] |
||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
| Cancer Research | Clinical Cancer Research |
| Cancer Epidemiology Biomarkers & Prevention | Molecular Cancer Therapeutics |
| Molecular Cancer Research | Cancer Prevention Research |
| Cancer Prevention Journals Portal | Cancer Reviews Online |
| Annual Meeting Education Book | Meeting Abstracts Online |