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Experimental Therapeutics, Molecular Targets, and Chemical Biology |
Departments of 1 Medical Oncology, 2 Pediatric Hematology/Oncology, and 3 Microarray Facility, VU University Medical Center, Amsterdam, the Netherlands
Requests for reprints: Godefridus J. Peters, Department of Medical Oncology, VU University Medical Center, P.O. Box 7057, 1007 MB Amsterdam, the Netherlands. Phone: 20-444-2633; Fax: 20-444-3844; E-mail: gj.peters{at}vumc.nl.
| Abstract |
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| Introduction |
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In the clinic, gemcitabine is used in combination with other drugs for the treatment of locally advanced or metastasized nonsmall cell lung cancer (NSCLC) and bladder cancer and as a single agent for the treatment of adenocarcinoma of the pancreas (35). Development of drug resistance is a major problem in the treatment of neoplasms. Resistance can be either inherent or acquired. Inherent resistance is a quality of several tumor types, which is reflected in low response rates in clinical trials (6). Acquired resistance can develop by selection of cells from a heterogeneous tumor cell population during repetitive treatment with a drug.
In the cell, gemcitabine is phosphorylated to a monophosphate, diphosphate, and triphosphate, before incorporation into DNA, which is required for its growth inhibiting activity (2). The first step in phosphorylation is catalyzed by dCyd kinase (dCK), which is the rate-limiting step for further phosphorylation to active metabolites and thus essential for the activation of gemcitabine (7). For this reason, dCK plays a pivotal role in gemcitabine activation. Gemcitabine may also be activated by the mitochondrial thymidine kinase 2 (TK2) but not by the cytoplasmic thymidine kinase 1 (TK1; ref. 8) and is inactivated by deamination, catalyzed by dCyd deaminase (dCDA) to 2',2'-difluorodeoxyuridine (dFdU; ref. 9).
Ribonucleotide reductase, which consists of two subunits M1 and M2, catalyzes de novo synthesis of deoxyribonucleoside diphosphates (dNDP), as building blocks of DNA. The enzyme reduces the hydroxyl at carbon 2 of the ribose sugar in ribonucleoside diphosphates (NDP) to a hydrogen, forming a deoxyribose sugar in the corresponding dNDP. In this reaction, a free-radical mechanism is involved. The diphosphate of gemcitabine dFdCDP is an inhibitor of ribonucleoside reductase, resulting in a decrease in deoxynucleoside triphosphate (dNTP) pools, which are required for DNA repair and synthesis (10, 11). Moreover, a decrease in dCyd triphosphate (dCTP) pools will decrease feedback inhibition of dCK and thus increase gemcitabine phosphorylation (10). The mechanism of inhibition of ribonucleotide reductase by dFdCDP is not completely clarified yet, but several studies suggest that M1 is the targeted subunit of ribonucleotide reductase (11, 12). However, M2 holds the organic free radical that is essential for the enzyme activity (13).
In multiple in vitro studies, the main resistance mechanism against gemcitabine was a decrease in dCK activity (7). However, resistance to gemcitabine can include several other mechanisms besides dCK deficiency, including an increased activity of dCDA, increased ribonucleotide reductase activity, decreased accumulation of triphosphates, and an altered DNA polymerase (7).
All models for the development of gemcitabine resistance are in vitro models. Because of the wide use of gemcitabine, further insight into mechanisms of acquired resistance might be of great value. Because the translation of in vitro results to the clinic is usually hampered by the lack of suitable in vivo models, we developed an in vivo model of gemcitabine resistance. For that purpose, Colon 26-A, a murine tumor with a moderate in vivo sensitivity to gemcitabine, was used (14). Resistance was induced by repeated gemcitabine treatment. Initial studies focused on resistance mechanisms known from in vitro studies, dCK, dCDA, TK2, and DNA polymerase activity and accumulation of the triphosphate dFdCTP. Because this approach did not reveal a clear explanation for the resistance, parental and the gemcitabine-resistant tumors were analyzed by expression microarrays. Rather than dCK, dCDA, and DNA polymerase, this analysis identified RRM1 as a main player in gemcitabine resistance in vivo. Subsequent mechanistic studies concentrated on mRNA and protein expression of RRM1 and confirmed our findings that RRM1 is a major determinant of acquired gemcitabine resistance in vivo.
| Materials and Methods |
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Murine tumors and establishment of resistance. Sources and characteristics of the Colon 26 were described previously (15). Colon 26 tumors were grown in female BALB/c mice (Harlan/Olac, Zeist, The Netherlands). The mice were kept in an area maintained on a standardized light/dark cycle and had access to food (RMH-B 10 mm code 2100, Hope Farms, Woerden, The Netherlands) and water ad libitum. Tumors were transplanted s.c. in both flanks in the thoracic region in small fragments of 1 to 5 mm2.
Mice were treated by i.p. bolus injection. The maximum tolerable dose (MTD) was assessed in non-tumor-bearing mice and defined as the dose that caused a maximal weight loss of 15%. In BALB/c mice, the MTD was 120 mg/kg gemcitabine every 3 days for four times (q3dX4; ref. 14). Resistance to gemcitabine was induced by continued treatment of six Colon 26-A tumors in three mice at the MTD. Treatment started 10 days after each transplantation. One day after the last dose, the most resistant tumor was transplanted and treatment of six tumors in three mice was repeated. After six generations, mice were treated 17 times without transplantation of the tumor. When weight of the mice decreased to below 15% of the initial weight, treatment was temporarily delayed. Finally, a tumor was created with a gemcitabine resistant phenotype and termed Colon 26-G (gemcitabine). Different generations of Colon 26-A and Colon 26-G were analyzed separately.
To determine the in vivo antitumor efficacy of gemcitabine treatment, tumor-bearing mice were treated at the MTD. Each group consisted of at least six mice. Experiments and their evaluation were done essentially as described previously (15). Tumor sizes were determined by caliper measurement and growth was evaluated by calculation of a T/C value defined as volume of tumors of treated mice divided by the volume of tumors of control mice and by a growth delay factor (GDF) defined as the number of tumor doubling times gained by the treatment.
Tissue preparation for enzyme assays. Frozen murine tumors were pulverized using a microdismembrator as previously described (16). Subsequently, the frozen powder was weighed and suspended in ice-cold assay buffer [0.3 mmol/L Tris-HCl (pH 8.0)] at a concentration of 1 g tissue per 3 to 4 mL buffer. The suspension was centrifuged twice (10 minutes at 4,000 x g at 4°C; the supernatant subsequently, 20 minutes at 10,000 x g at 4°C). One part of the undiluted tumor supernatant was taken for measurement of the protein content with the Bio-Rad Bradford protein assay (17), the other part was used for enzyme assays.
Deoxycytidine and thymidine kinase enzyme activities. For determination of dCK and TK activities in tumors, the abovementioned supernatant was used. For dCK activity, a substrate mixture was added to the supernatant resulting in final concentrations of 10 mmol/L ATP, 5 mmol/L MgCl2, 0.18 mol/L Tris-HCl, 25 µmol/l ß-mercaptoethanol, and 230 µmol/L dCyd (specific activity, 0.04 Ci/mmol), pH 7.4 and incubated for 30 minutes at 37°C, essentially as described (18). Thymidine was added at 1 mmol/L to inhibit TK2-mediated phosphorylation of dCyd. TK activities were measured similar to dCK by using thymidine as a substrate. The reaction mixture contained 21.9 µmol/L [2-4C-]-thymidine (specific activity, 1.8 Ci/mmol) and enzyme suspension essentially as described previously (19). To discriminate between TK1 and TK2, we added dCTP (final concentration, 10 mmol/L) to inhibit TK2. TK2 activity can be estimated by subtracting TK1 activity from total TK activity. Substrates were separated from products by TLC as described previously (18). Enzyme activities were expressed in nmol product formed per hour per mg protein (nmol/h/mg protein).
Deoxycytidine deaminase activity. Activity of dCDA was determined as described earlier (18). Briefly, in the abovementioned supernatant enzyme activity was determined at 37°C with 500 µmol/L dCyd as a substrate for 15 or 25 minutes, after which proteins were precipitated by TCA and nucleosides were extracted by trioctylamine/1,1,2-trichloro-trifluoroethane (v/v, 4:1). The substrate dCyd and its product deoxyuridine were analyzed using reversed phase high-performance liquid chromatography.
DNA polymerase assay. Total DNA polymerase activity was assayed by measurement of 14C-dTTP incorporation into DNA (20). Pulverized tissues were suspended in TEMG buffer [50 mmol/L Tris-HCl, 1 mmol/L EDTA, 20% glycerol (pH 7.4)] supplemented with 0.8 mol/L KCl, centrifuged at 10,000 x g for 10 minutes at 4°C, and the supernatant subsequently for 60 minutes at 100,000 x g and 4°C. The 100,000 x g supernatant was dialyzed against KCl-free TEMG buffer. The assay mixture (200 µL) contained the equivalent of 400-2,000 µg protein, 3.3 mmol/L DTT, 50 mmol/L Tris-HCl, 30 µmol/L dATP, 30 µmol/L dCTP, 30 µmol/L dGTP, 7.2 mmol/L MgCl2, and 50 µg activated DNA (pH 7.2) and was carried out in 96-well filter plates as used previously (21). The reaction was started by addition of 0.125 µCi 14C-dTTP (final concentration, 0.1 µmol/L) and terminated after 5 to 40 minutes by removal of the solution through the filter. The filters were subsequently washed with 5% TCA containing 0.1% pyrophosphate followed by two washes with 5% TCA and twice with 96% ethanol. The filters were dried, taken off the plate, and put in liquid scintillation vials. DNA was solubilized with 100 µL of 2 mmol/L NaOH for 3 hours and subsequently counted. Activated DNA was prepared by incubation of 350 µg calf thymus DNA with 15 units DNase I in 350 µL of 50 mmol/L Tris-HCl (pH 7.2), 2 mmol/L MgCl2, 1 mmol/L ZnCl2 at 37°C for 15 minutes followed by heating for 5 minutes at 77°C and chilling on ice.
Ribonucleotide reductase activity. The assay for ribonucleotide reductase activity is based on the conversion of 14C-CDP to 14C-dCDP in extracts from tumors as described earlier by Fukushima et al. (22). After the assay, both substrate and product are degraded by snake venom diesterase to cytidine and dCyd. Briefly, tumors are pulverized in a microdismembrator as described above. The powder was suspended (1 part powder and 3 parts assay buffer) in assay buffer [5 mmol/L MgCl2/10 mmol/L NaF/1 mmol/L FeCl3/5 mmol/L DL-DTT/50 mmol/L HEPES and protease inhibitor cocktail (pH 7.4); Roche Laboratories, Woerden, The Netherlands], centrifuged for 10 minutes at high speed and 4°C. The supernatant was used for the ribonucleotide reductase assay, which consisted of 65 µL (diluted) supernatant, whereas the reaction was started by addition of 10 µL 14C-CDP (specific activity, 60 mCi/mmol; final concentration in assay mixture, 50 µmol/L) and 10 µL of 42.5 mmol/L ATP (neutralized to pH 7.4), bringing the total reaction volume to 85 µL. The reaction was linear up to 15 minutes (depending on the source of the enzyme) and stopped by boiling for 3 minutes at 95°C to denature all proteins followed by chilling on ice and a short centrifugation step. To degrade the substrate 14C-CDP and the product 14C-dCDP to 14C-cytidine and 14C-dCyd, we added 10 µL of snake venom diesterase (200 mg/mL; Crotalus ademanteus, Eastern Diamondback Rattlesnake, venom, Sigma, St. Louis, MO) in 15 mmol/L MgCl2 to the assay mixture and incubated this for 2 hours at 37°C; this reaction was also stopped by heating at 95°C for 3 minutes followed by addition of 5 µL of unlabeled 100 mmol/L cytidine/100 mmol/L dCyd to facilitate detection on TLC sheets. At least 10 µL of this mixture was spotted onto a TLC Al sheet silica gel 60 F254 (Merck, Amsterdam, The Netherlands), which were developed with 0.87 mol/L H3BO3, 0.2 mol/L LiCl in 50% ethanol. Rf values for cytidine and dCyd (as detected under UV light) were 0.4 and 0.75, respectively. Spots were cut out and radioactivity was estimated by liquid scintillation counting.
dFdCTP accumulation in vivo. Colon 26-A- and Colon 26-G-bearing BALB/c mice were treated with a single dose of 120 mg/kg gemcitabine. After 2, 6, 8, and 24 hours, tumors were removed under anesthesia, immediately frozen and pulverized, after which, nucleotides were extracted. Briefly, proteins in frozen tissue powder were precipitated by TCA, spun down, after which, the supernatant was neutralized with tri-octylamine/1,1,2-tri-chloro-trifluoroethane. Finally, dFdCTP was analyzed on high-performance liquid chromatography. Nucleotides were detected at 254 and 280 nm (23).
Total RNA isolation. Total RNA isolation from separate generations of Colon 26-A and Colon 26-G tumors grown in different animals were done using the TriZol (Invitrogen, Leek, The Netherlands) method according to the manufacturer's protocol. Total RNA concentration was measured by A260 and RNA integrity judged on a 1.2% agarose gel. Samples were dissolved in 100% DMPC-treated H2O and stored at 80°C before use in either the microarray hybridizations or real-time PCR confirmation of the microarray results.
Microarray procedures. The mouse oligoLibrary (compugen/Sigma-Aldrich Chemie B.V., Zwijndrecht, The Netherlands) containing 7,524 oligonucleotides (65 bp) representing 7,230 separate genes4 was resuspended to a concentration of 10 µmol/L in 150 mmol/L sodium phosphate buffer, ph 8.5 and spotted in duplicate using the SpotArray 72 with Telechem SMP pins, partially described (24). Single-stranded cDNA was synthesized from 30 µg of total RNA by reverse transcription essentially according to DeRisi et al. (25) using aminoallyl-labeled dUTP (Ambion Ltd., Huntingdon, United Kingdom). Labeling was done according to the aminoallyl-labeling protocol developed by DeRisi.5 Briefly, cDNA was incubated at room temperature for 1 hour with fluorolink monofunctional Cy5 or Cy3 dye (Amersham, Roosendaal, The Netherlands) followed by 15 minutes of 4 mol/L hydroxylamine treatment. Uncoupled dyes were removed using Qiaquick PCR purification columns (Qiagen, Westburg B.V., Leusden, The Netherlands) and mixed with 12 µg poly(dA) (Amersham), 60 µg yeast tRNA (Sigma-Aldrich Chemie), and 24 µg Cot-1 DNA (Invitrogen). The labeled target was dissolved in 127-µL hybridization mixture containing 46% formamide (Invitrogen), 9.5% dextran sulfate (U.S. Biochemical Corp., Cleveland, OH), 2x SSC, and 0.2% SDS. The labeled target was heated to 70°C for 10 minutes and annealed at 37°C for 1 hour. Slides were prehybridized in hybridization mix with 30 µg salmon sperm DNA (Invitrogen) for 1 hour at 37°C followed by 14 hours at 37°C overnight (HybArray 12, Perkin-Elmer, Zaventem, Belgium). After hybridization, the slides were washed in the HybArray 12, with 50% formamide (FLUKA, Sigma-Aldrich Chemie), 2x SSC (pH 7) at 35°C for 15 minutes followed by PI buffer [0.1 mol/L sodium phosphate, 0.1% Igepal Ca630 (pH 8)] at room temperature and three washes of 0.2x SSC, 0.1x SSC, and 0.01x SSC at room temperature followed by centrifugation. Arrays were scanned using a laser scanner (ScanArray Express, Perkin-Elmer) and analyzed using Imagene version 5.6 (Westburg). Cy3/Cy5 ratios are calculated by taking the log2 of the "signal mean" of each spot. This is followed by a standard normalization for spot intensity and calculation of the ratios. Three separate experiments and a self-self experiment were done to find differences between three different generations of Colon 26-G tumors and three different generations of Colon 26-A tumors.
Real-time light cycler-PCR. The assays for RRM1 and RRM2 mRNA expression were done by real-time PCR with a LightCycler 1.0 (Roche Diagnostics, Almere, The Netherlands). Primers for murine RRM1 and RRM2 were based on the sequence of the gene (Entrez-PubMed) and designed by the program Primer3;6 forward primer, 5'-CCCAATGAGTGTCCTGGTCT and 5'-CCTACTAACCCCAGCGTTGA; reverse primer, 5'-GTTCTGCTGGTTGCTCTTCC and 5'-GTTTCAGAGCTTCCCAGTGC, respectively. The primers for murine ß-actin are forward, 5'-TGTTACCAACTGGGACGACA and reverse, 5'-GGGGTGTTGAAGGTCTCAAA. Synthesis of double-stranded DNA during the various PCR cycles was monitored using SYBR Green I (Roche Laboratories). A Master SYBR Green I working solution was prepared by mixing 60 µL of LC-FastStart Reaction Mix SYBR Green I with 4 µL of LC-FastStart Enzyme (Roche Laboratories). Two volumes of this working solution were mixed with 16 volumes of a solution containing varying concentrations of MgCl2, RRM1, RRM2, or ß-actin primers and H2O. Thereafter, 18 µL of this solution were pipetted into a light cycler capillary. The reaction was started after the addition of 2-µL cDNA of varying dilutions of tumor cells. For RRM1 and RRM2, the final optimal concentration of MgCl2 was 3 mmol/L and that of the primer 0.7 µmol/L. For ß-actin, these concentrations were 5 mmol/L and 0.9 µmol/L.
The RRM1 and RRM2 PCR program consisted of an initial denaturation step at 95°C for 10 minutes followed by 45 cycles of 10 seconds at 95°C, 5 seconds at 60°C, and 17 seconds at 72°C using AmpliTaq Gold DNA Polymerase. For ß-actin, the PCR program was similar to that of RRM1 and RRM2. To verify the purity of the products, a melting curve was produced after each run as described previously (26).
The expression of both RRM1 and RRM2 were quantified relative to ß-actin. Construction of calibration lines and calculations were done as described previously for dCK (26).
Western blot for ribonucleotide reductase subunits M1 and M2. Western blotting by goat anti-human, anti-mouse monoclonal antibodies (Santa Cruz Biotechnology, Santa Cruz, CA) against ribonucleotide reductase subunits M1 and M2 was done essentially as previously for dCK (27). In short, proteins were separated on 12.5% SDS-polyacrylamide gels, transferred to nitrocellulose membranes, and probed with the M1 and M2 antibody at a dilution of 1:500 or the ß-actin mouse anti-actin monoclonal (1:3,000; Chemicon International, Temecula, CA), which was followed by incubation with the second antibody rabbit-anti goat (DAKO, Glostrup, Denmark) conjugated to horseradish peroxidase (1:2,500). Immune complexes were visualized by the enhanced chemiluminescence reaction (Amersham Pharmacia Biotech, Roosendaal, The Netherlands) and quantified by scanning on a CS-690 Bio-Rad scanner (Bio-Rad, Hercules, CA). Levels of expression were reported relative to the parental tumor Colon 26-A (which was set at 1).
Statistics. To evaluate possible significant differences in mRNA expression, enzyme activities and dFdCTP accumulation between the parental tumor and the gemcitabine resistant variant, a t test was used, one tailed, unpaired two-sample unequal variance. The computer program SPSS (version 7.5, SPSS, Inc., Chicago, IL) was used for statistical analysis. No statistical analysis was done on the microarray gene expression profiling. Genes of interest were selected visually. Statistical analysis of these arrays will be published separately.
| Results |
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Enzyme activities. Because dCK, dCDA, TK, and DNA polymerase activities are determinants of gemcitabine activity, we measured their activity in resistant tumors (Table 1). The activity of dCK in Colon 26-G tumors was 1.7-fold lower than in the parental Colon 26-A tumor (P < 0.01), but no difference was found in dCDA activity between Colon 26-A and Colon 26-G tumors. Surprisingly, the activities of both TK1 and TK2 were decreased in Colon 26-G. The decrease was most pronounced for TK2 (12-fold, P < 0.001).
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Accumulation of dFdCTP. To determine whether resistance would be due to a decrease of dFdCTP accumulation, we treated mice with a single 120 mg/kg dose of gemcitabine and removed the tumors at 2, 4, 8, and 24 hours after injection. Accumulation of dFdCTP in the parent tumor and the gemcitabine-resistant variant was similar at 2 hours after injection but higher in Colon 26-A at 6 hours (P < 0.05; Fig. 3). dFdCTP was retained similarly in both tumors. After 24 hours, no dFdCTP was detectable in both tumors.
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| Discussion |
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The single most striking increase in expression revealed by microarray expression profiling was of the RRM1 gene, whose increase was confirmed by both reverse transcription-PCR as well as by Western blotting. In contrast, RRM2 expression, which was reported to be related to gemcitabine resistance previously (30), was not altered in Colon 26-G. Ribonucleotide reductase was already known as one of the targets for gemcitabine (10); however, reports from in vitro studies on the importance of ribonucleotide reductase inhibition in the cytotoxic properties of gemcitabine were not consistent (7). Goan et al. and Dumontet et al. were the first to suggest that ribonucleotide reductase was a primary target of gemcitabine as a regulator of dNTP pools, leaving a secondary role for dCK (30, 31). In human oropharyngeal epidermoid carcinoma KB cells made 10-fold resistant to gemcitabine, a 2-fold increase in ribonucleotide reductase activity was found, resulting in increased dATP and dCTP pools (30) due to an overexpression of RRM2. No difference was found in dCK expression, but dCK enzyme activity was decreased 2-fold. After removal of the endogenous dNTP pools from the extract by passing it over a G-25 column, no difference in dCK activity in extracts from parental and variant cells was found. Dumontet et al. observed a 4-fold increase in ribonucleotide reductase activity as well as a 4-fold decrease in dCK activity but did not specify the subunit (31). In contrast, Jordheim et al. (32) found a 2-fold reduction in the RRM2 unit similar to our data.
Davidson et al. identified an increased expression of RRM1 as the major determinant of gemcitabine resistance in two pairs of parental and gemcitabine resistant human NSCLC cell lines (33). In a microarray profiling assay, the RRM1 gene was up-regulated at least 5-fold. Further studies revealed that there was no difference in the sequence of the cDNA encoding RRM1 between the parental and gemcitabine-resistant cells and that activity of ribonucleotide reductase was not altered. We only observed a moderately increased ribonucleotide reductase activity in the Colon 26-G tumors. This is not surprising because ribonucleotide reductase activity is predominantly associated with the RRM2 subunit, whereas the RRM1 subunit is involved in substrate regulation of the enzyme. Because the RRM2 subunit is responsible for the catalytic activity of the enzyme, Davidson et al. suggested that RRM1 might be acting as a "molecular sink" for gemcitabine, whereby the drug binds irreversibly to subunit RRM1 and inactivates it (33). To maintain sufficient ribonucleotide reductase activity for the cells to survive, the cells increase RRM1 expression.
Up to now, all studies on ribonucleotide reductase as a factor in gemcitabine resistance are based on in vitro acquired resistance. No data are available in animal model systems showing a relationship between ribonucleotide reductase expression and acquired or intrinsic gemcitabine resistance similar to that between gemcitabine and dCK (27, 34). However, patients with metastatic NSCLC treated with gemcitabine containing chemotherapy and low pretreatment expression of RRM1 mRNA had a significantly longer median survival than those with a high expression (35), indicating a role for RRM1 in intrinsic resistance to gemcitabine.
Our data do not rule out that other mechanisms of resistance determine sensitivity to gemcitabine in vivo and in patients. The used microarray and real-time PCR assays do not give insight in mutations, genomic polymorphisms, and posttranslational modifications such as protein phosphorylation, although other genes are coamplified or deleted (36). In addition, it is also known that P53 can regulate ribonucleotide reductase expression and activity (37). Transporters for gemcitabine such as CNT can translocate from the membrane to intracellular vesicles. Future studies should therefore not only focus on RRM1 expression. Immunohistochemistry can give insight in the intracellular localization of the transporters and other target enzymes, such as dCK (38).
In conclusion, we developed the first in vivo model of resistance to gemcitabine as a result of repetitive treatment using a clinically relevant schedule. Microarray profiling revealed an marked increase in RRM1 expression, which is in line with in vitro studies. Ribonucleotide reductase was already known as a target for gemcitabine, but our data identify ribonucleotide reductase as a key target for acquired in vivo gemcitabine resistance.
| Acknowledgments |
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| Footnotes |
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G. Veerman is currently at the New Drug Development Organization Oncology, Amsterdam, the Netherlands.
5 http://cmgm.stanford.edu/pbrown/protocols/index.html. ![]()
6 http://www.frodo.wi.mit.edu. ![]()
Received 3/24/05. Revised 7/15/05. Accepted 8/ 1/05.
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