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Experimental Therapeutics, Molecular Targets and Chemical Biology |
Departments of 1 Pathology and 2 Oncology and Gynecology and Obstetrics, Johns Hopkins Medical Institutions, Baltimore, Maryland
Requests for reprints: Ie-Ming Shih, Johns Hopkins Medical Institutions, 1503 East Jefferson Street, Room B-315, Baltimore, MD 21231. Phone: 410-502-7774; Fax: 410-502-7943; E-mail: ishih{at}jhmi.edu.
| Abstract |
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Key Words: KRAS BRAF CI-1040 ovarian cancer MAP kinase
| Introduction |
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Mutations of either BRAF or KRAS lead to constitutive activation (phosphorylation) of the downstream target, mitogen-activated protein kinase (MAPK), also known as extracellular signal-regulated protein kinase (ERK; refs. 9, 10). In a previous study, we showed a correlation between mutations in BRAF or KRAS and overexpression of activated MAPK in ovarian tumor tissues further supporting the above view (11). Activation of MAPK activates downstream cellular targets (12, 13) including a variety of cellular and nuclear proteins. Although the function and downstream effectors of the RAS/RAF/MEK/MAPK (ERK) pathway have been recently studied (14), the biological role of this pathway in the development of ovarian serous tumors has not been explored.
Based on our recent studies demonstrating that mutations in KRAS or BRAF occur very early in the tumor development (5) and that these mutations are associated with activation of MAPK in ovarian serous tumors (11), we hypothesize that constitutive activation of MAPK plays a key role in the development of serous tumors containing mutant KRAS or BRAF. To test this hypothesis, we compared the phenotypes and gene expression profiles in cultured ovarian serous tumor cells after treatment with a highly potent and selective inhibitor of MEK1/2, CI-1040 (formerly known as PD184352; refs. 1518) that prevents the activation (phosphorylation) of MAPK. One of the differentially expressed genes, cyclin D1, was the most dramatically and consistently down-regulated by CI-1040 and accordingly, it was selected for further study for its biological role in mediating MAPK activation and cell proliferation.
| Materials and Methods |
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1 cm) were incubated with trypsin-EDTA (Life Technologies, Grand Island, NY) at 37°C for 10 minutes with agitation. The detached epithelial cells were harvested by centrifugation. This procedure significantly minimized stromal cell contamination by detaching tumor epithelial cells directly from the tumor surface whereas keeping the underlying stroma intact. Freshly isolated tumor cells were allowed to grow in culture and were used for experiments within two passages. Culturing ovarian surface epithelium was done by gently scraping the surface of normal ovaries after incubation with trypsin-EDTA at 37°C for 15 minutes. The purity of epithelial cells was determined by the cytokeratin-8 immunoreactivity. Samples with >98% cytokeratin-8-positive cells were used. The culture of ovarian stromal cells was established by mincing a piece of normal ovary after removing the surface epithelium. All cultures were maintained in RPMI 1640 supplemented with 10% fecal bovine serum and 1% antibiotics. Selection of pCMV/cyclin D1 stable clones was done by minimal dilution in a selection medium containing 18 µg/mL of Blasticidin (Sigma, St Louis, MO).
Mutational Analysis of BRAF and KRAS
Genomic DNA was purified from all the cell lines and primary cultures using a Qiaquick PCR purification kit (Qiagen, Valencia, CA). PCR was then done followed by nucleotide sequencing at the Agencourt Bioscience (Beverly, MA). Exon 1 of KRAS and exon 15 of BRAF were both sequenced as each exon harbors almost all mutations of both genes (24, 6). The primers for PCR and sequencing were manufactured by GeneLink (Hawthorne, NY) and their sequences were described in a previous report (5). The sequences were analyzed using the Lasergene program, DNASTAR (Madison, WI).
LongSAGE Library Construction. Total RNA was isolated from MPSC1 cells after 9-hour incubation with 5 µmol/L CI-1040 (a gift from M. Kolodney, Department of Medicine, UCLA School of Medicine, Los Angeles, CA; ref. 19) and DMSO control. The concentration of CI-1040 was used because this was the minimal concentration that abolished the expression of active MAPK in MPSC-1 cells based on Western blot analysis in MPSC-1 cells. LongSAGE was done with 2 µg mRNA using the standard SAGE protocol that has been detailed at http://www.sagenet.org/sage_protocol.htm with the modifications previously described (20). Linkers containing the MmeI recognition site were ligated to 3' cDNA ends after NlaIII digestion [linker 1A (5'-TTTGGATTTGCTGGTGCAGTACAACTAGGCTTAATATCCGACATG-3') and linker 1B (5'-TCGGATATTAAGCCTAGTTGTACTGCACCAGCAAATCCC7-amino-modified-3')] followed by annealing together and ligation to half the cDNA population, and linker 2A (5'-TTTCTGCTCGAATTCAAGCTTCTAACGATGTACGTCCGACATG-3') and linker 2B (5'-TCGGACGTACATCGTTAGAAGCTTGAATTCGAGCAGC7-amino-modified-3') were annealed together and ligated to the remaining half of the cDNA. Linker tag molecules were released from the cDNA using the MmeI type IIS restriction endonuclease (21). Digestion was done at 37°C for 2.5 hours using 40 units MmeI in 300 µL of 10 mmol/L HEPES (pH 8.0), 2.5 mmol/L potassium acetate, 5 mmol/L magnesium acetate, 2 mmol/L DTT, and 40 µmol/L S-adenosylmethionine. The linker 1 tag and linker 2 tag molecules were not polished and were directly ligated together in a 6 µL reaction containing 4 units T4 DNA ligase (Invitrogen, Carlsbad, CA) in the supplied buffer for 2.5 hours at 16°C. The ligation mixture was used to transform bacteria and
3,840 clones were sequenced to obtain
50,000 to 60,000 tags from each LongSAGE library (Agencourt, MA). The SAGE software was modified to allow extraction of 21-bp tags from sequences of concatemer clones.
Quantitative PCR Analysis of Candidate Genes. Single-stranded cDNA was synthesized from CI-1040 and DMSO-treated MPSC1, OVPC-1, OVPC-3, SKOV3, and OVCAR3 cells at 24 hours using the Superscript II reverse transcriptase (Invitrogen) following the manufacturer's protocol, and mock template preparations were prepared in parallel without the addition of reverse transcriptase. After analysis of LongSAGE data, we selected the top 20 candidates of CI-1040 induced up-regulated and down-regulated genes for real-time PCR analysis. As we expected that most tags would correspond to the last exon of the candidate LongSAGE genes, primers were designed using the Primer 3 interface (http://www-genome.wi.mit.edu/cgi-bin/primer/primer3_www.cgi) to span a 100- to 200-bp region that included the tag, and were synthesized by GeneLink (Hawthorne, NY). Quantitative PCR was done using an iCycler (Bio-Rad, Hercules, CA) using Pico Green dye (Molecular Probes, Eugene, OR), and threshold numbers were collected using the iCycler software version 1.0. Averages in the threshold cycle number (Ct) of duplicate measurements were obtained. The results were expressed as the difference between the Ct of the gene of interest and the Ct of a control gene (APP) for which expression is relatively constant among the SAGE libraries analyzed (22).
Western Blot Analysis
Cell lysates were prepared by dissolving cell pellets in the Laemmli sample buffer (Bio-Rad) supplemented with 5% of ß-mercaptoethanol (Sigma). Western blot analysis was done on ovarian cancer cell lines/cultures, including MPSC1, OVCAR3, SKOV3, and OVPC-5. Similar amounts of total protein from each lysate were loaded and separated on 10% Tris-Glycine-SDS polyacrylamide gels (Novex, San Diego, CA) and electroblotted to the Millipore Immobilon-P polyvinylidene difluoride membranes. The membranes were probed with the anti-active MAPK antibody (pTEpY, 1:5,000; Promega, Madison, WI) or an anti-cyclin D1 antibody (CD1.1, 1:200; abcam, Cambridge, MA) followed by a peroxidase conjugated anti-mouse or anti-rabbit immunoglobulin (1:20,000). The same membrane was probed with an antibody that reacts with glyceraldehyde-3-phosphate dehydrogenase for loading controls. Western blots were developed by chemiluminescence (Pierce, Rockford, IL).
Cell Growth and Cell Cycle Assays
For cell growth assay, cells were plated at the same density (105 cells per well) in 24-well plates and cell growth assay was done by counting the number of viable cells 72 hours after treating the cells with CI-1040 at 5 µmol/L and DMSO (control). The data was expressed as percentage of the DMSO control. The mean and SD were obtained from three experiments. To assess if cyclin D1 can revert the growth inhibitory effect of CI1-040, we constructed a mammalian expression vector, pCMV/cyclin D1 with a V5 tag at the COOH terminus. The cDNA of cyclin D1 was prepared from the MPSC1 cells, PCR and cloned to a mammalian expression vector, pcDNA6/V5-His A (Invitrogen). The clone was sequenced to ensure a wild-type coding sequence of cyclin D1. pCMV/cyclin D1 was stably transfected into MPSC1 cells using the Nucleofector II electroporator (Amaxa, Köln, Germany) under a selection marker of Blasticidin (18 µg/mL). MPSC1 cells with both pCMV/cyclin D1 and pcDNA6/V5-His Atransfected cells were treated with either CI-1040 or DMSO (control). Cell number was counted at 0, 24, 48, and 72 hours. For cell cycle analysis, both attached and floating cells were harvested for study. Approximately 3 x 105 cells were resuspended in 50 µL of PBS, which was then mixed with 350 µL of staining solution containing 0.6% NP40, 3% paraformaldehyde, and 10 µg/mL 4',6-Diamidino-2-phenylindole. 4',6-diamidino-2-phenylindolestained cells were subject to cell cycle analysis using a BD-LSR flow cytometer (Becton Dickinson, Mountain View, CA). The sub-G1 population in the cell cycle analysis was defined as a fraction of apoptotic cells. To confirm the presence of apoptotic cells, 4',6-diamidino-2-phenylindolestained cells were also examined under a Nikon fluorescence microscope or stained with Annexin V dye.
| Results |
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0.8896 and among them, 93 tags were further chosen based on the ratio of tag number of each library (i.e., DMSO/CI-1040 or CI-1040/DMSO) >3. Thus, almost all the genes showed a similar tag count (<3-fold) in both libraries except those 93 genes that represented 0.46% of
20,250 unique tags. We selected the top 20 genes for validation based on the largest fold difference in tag number between CI-1040 and DMSO LongSAGE libraries. The validation was done in two steps using an independent assay, the quantitative real-time PCR. First, 14 candidate genes were selected as the pattern of gene expression was identical between LongSAGE and real-time PCR in MPSC1 cells. The gene names, unigene number, possible functions, and expression levels of LongSAGE and real-time PCR are listed in Table 1. In the second step, the genes identified in step 1 were further tested in CI-1040- and DMSO-treated OVPC-1, OVPC-3, and OVPC-5 primary cultures in which sufficient RNA was available for multiple real-time PCR analyses. Of the 14 genes, we found that 10 genes showed consistent alteration in gene expression in at least three of four low-grade tumors including MPSC1, OVPC-1, OVPC-3, and OVPC-5 (Table 2). The up-regulated genes included tumor necrosis factorrelated apoptosis-induced ligand (TRAIL), thrombospondin-1, optineurin, palladin, and pannexin and the down-regulated genes contained cyclin D1, COBRA1 (cofactor of BRCA1), transglutaminase-2, HSPC152 (not yet annotated) and protein phosphatase (PP1R14B). In fact, down-regulation of cyclin D1 and COBRA1 and up-regulation of pannexin were observed in all four cultures.
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| Discussion |
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In this study, we applied LongSAGE as a discovery tool to identify genes in which their expression was altered shortly (9 hours) after CI-1040 treatment. Among all the differentially expressed genes, cyclin D1 showed the greatest fold in the alteration of gene expression. Cyclin D1 plays an important role in the cell cycle transition from G1-to-S phase by association with cyclin-dependent kinases (cdk) 4 and 6 which phosphorylate the retinoblastoma protein, blocking its growth inhibitory activity and promoting the release of bound E2F transcription factor. These events facilitate the activation of cyclin E-cdk 2 and cyclin A-cdk 2, molecules required for the entry into and completion of S phase (29, 30). Thus, the G1 cell cycle arrest as observed in CI-1040-treated MPSC1 cells is consistent with the function of cyclin D1. Several studies have reported that overexpression of cyclin D1 occurs in several types of human cancer including ovarian serous tumors based on immunohistochemistry (31). In ovarian tumors, overexpression of cyclin D1 is associated with low-grade tumors (31), a finding consistent with our view that cyclin D1 is a downstream target of active MAPK which is constitutively expressed in most low-grade ovarian tumors because of their frequent activating mutations in KRAS and BRAF. In the present study, Western blot analysis showed a significant decrease of cyclin D1 in all the ovarian tumor cell lines and primary cultures examined independent of their mutational status in KRAS and BRAF. This observation is in accordance with a previous report showing that inhibition of the ERK1 and ERK2 MAPK signaling by expression of dominant-negative forms of MAPK or by MAP kinase phosphatase strongly inhibited cyclin D1 promoter (24). In addition, expression of cyclin D1 and overexpression of constitutively active MKK1 mutant dramatically increased cyclin D1 promoter activity and cyclin D1 protein expression (24). To address whether cyclin D1 is required for active MAPK-mediated cell proliferation, we established a stable MPSC1 line that constitutively expresses cyclin D1 and showed that the transfected cells were less sensitive to the growth inhibitory effect of CI-1040, providing cogent evidence to support the role of cyclin D1 as a downstream target in the MAPK pathway. Although cyclin D1 expression rescues growth suppression by CI-1040, it may not recapitulate all the functions in cell proliferation of active MAPK. This is because alterations in other genes may occur later and are therefore not detected by LongSAGE before it was done. It is interesting to note that the ovarian cancer cells with wild-type KRAS and BRAF were less dependent on cyclin D1 for cell proliferation because the expression level of cyclin D1 was down-regulated to an undetectable level by CI-1040, whereas the growth in those tumor cells was only mildly inhibited.
TRAIL represents a well-known gene that is up-regulated after CI-1040 treatment. TRAIL is a member of the death ligand family and consists of an extracellular TRAIL binding domain and a cytoplasmic "death domain." Binding of TRAIL to its receptor facilitates the induction of apoptosis (3234). Our finding of up-regulation of TRAIL after MAPK inhibition in ovarian tumor cells with mutations in KRAS/BRAF but not in those with wild-type sequences suggests that CI-1040 induced apoptosis is related to the expression of TRAIL. This finding complements a recent report showing that activation of MAPK suppressed the expression of TRAIL in nontransformed mammalian epithelial cells based on gene expression profiling using oligonucleotide expression arrays (14).
The functional roles of other CI-1040-responsive genes are less clear in the development of ovarian cancer. COBRA1 is a novel cofactor of the BRCA1 protein and has been cloned from a human ovarian cDNA library (35). It binds to the chromosome site by the first BRCT repeat of BRCA1 protein and is itself sufficient to induce chromatin unfolding. Thrombospondin is an extracellular matrix protein that plays a role in tumor progression by modifying tumor microenvironment. It has been shown that thrombospondin expression is repressed by RAS and MYC (36). Thrombospondin also inhibits tumorigenesis by suppressing the activity of matrix metalloproteinase-9 (37) and inhibits angiogenesis by binding to the CD36 receptor protein, which is present on endothelial cell surfaces (38). Thrombospondin is able to inhibit cancer cell growth and prevents metastasis in several tumor models, including breast, skin, and lung carcinomas and melanoma and malignant gliomas; its repression also promotes tumor growth (3941). Transglutaminase-2 is an enzyme that catalyzes the post-translational modification of proteins by the formation of cross-links (42). Future studies will focus on demonstrating the functions of these genes in response to activation of the RAS/RAF/MEK/MAPK pathway in ovarian tumors.
In summary, we have shown a genotype (mutation status of KRAS/BRAF)dependent phenotypic change (i.e., cell proliferation and apoptosis), in ovarian serous tumors in response to MAPK inactivation. The findings in this study provide new insight into the biological roles of the RAS/RAF/MEK/MAPK signaling pathway in ovarian serous tumors and have important therapeutic implication in ovarian cancer patients with KRAS or BRAF mutations. Ovarian tumors with KRAS or BRAF mutations are clinically low-grade and they are refractory to conventional cytotoxic chemotherapy (27, 28). Detection of KRAS and BRAF mutations in ovarian cancers may identify patients who will benefit from CI-1040 treatment.
| Acknowledgments |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
We thank the comments from the members in the Molecular Genetics Laboratory of Ovarian Cancer.
| Footnotes |
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C-L. Ho is currently at the Department of Pathology, National Cheng-Kung University, Tainan, Taiwan.
Received 10/ 7/04. Revised 12/ 9/04. Accepted 12/29/04.
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B. Immunity 1997;7:8316.[CrossRef][Medline]
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