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1 Integrated Program in Cellular, Molecular, and Biophysical Studies, Departments of 2 Pathology and 3 Medicine, 4 Institute for Cancer Genetics, 5 Herbert Irving Comprehensive Cancer Center, College of Physicians and Surgeons, Columbia University, New York, New York; Departments of 6 Oncology and 7 Pathology, 8 Lund Strategic Research Center for Stem Cell Biology and Cell Therapy, Lund University, Lund, Sweden
Requests for reprints: Ramon Parsons, Institute for Cancer Genetics, 1150 St. Nicholas Avenue, New York, NY 10032. Phone: 212-851-5278; Fax: 212-851-5256; E-mail: rep15{at}columbia.edu.
| Abstract |
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of PI3K (PIK3CA) occurs frequently in human cancer. We identified PIK3CA mutations in 26% of 342 human breast tumor samples and cell lines at about equal frequency in tumor stages I to IV. To investigate the relationship between PTEN and PIK3CA, we generated a cohort of tumors that had lost PTEN expression and compared it with a matched control set that had retained PTEN. A highly significant association between PIK3CA mutations and retention of PTEN protein expression was observed. In addition, PIK3CA mutations were associated with expression of estrogen and progesterone receptors (ER/PR), lymph node metastasis, and ERBB2 overexpression. The fact that PIK3CA mutations and PTEN loss are nearly mutually exclusive implies that deregulated phosphatidylinositol-3,4,5-triphosphate (PIP3) is critical for tumorigenesis in a significant fraction of breast cancers and that loss of PIP3 homeostasis by abrogation of either PIK3CA or PTEN relieves selective pressure for targeting of the other gene. The correlation of PIK3CA mutation to ER/PR-positive tumors and PTEN loss to ER/PR-negative tumors argues for disparate branches of tumor evolution. Furthermore, the association between ERBB2 overexpression and PIK3CA mutation implies that more than one input activating the PI3K/AKT pathway may be required to overcome intact PTEN. Thus, mutation of PIK3CA is frequent, occurs early in carcinoma development, and has prognostic and therapeutic implications.
Key Words: PTEN PIK3CA PI-3 kinase breast cancer ERBB2
| Introduction |
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(PIK3CA), is a transforming oncogene (3), the 3q26 region where PIK3CA is located is amplified in tumors (4, 5), and recently, the PIK3CA gene was shown to have activating mutations in nine types of cancer (68). Interestingly, Bachman et al. reported a 25% PIK3CA mutation rate in breast cancer but did not find any association to clinical markers (8). In the current study, we did a large-scale PIK3CA mutational analysis of 292 primary breast tumors and 50 cell lines, and describe for the first time the significant correlation of PIK3CA mutations to lymph node metastasis, estrogen receptor
(ER), progesterone receptor (PR), and ERBB2 positivity, and an inverse relationship to functional PTEN. | Materials and Methods |
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Immunohistochemical analysis. The Swedish cohort of tumors was evaluated for PTEN protein status by immunohistochemistry (IHC) on 4-µm formalin-fixed, paraffin-embedded tissue sections essentially as previously described (10, 11). Anti-PTEN Ab-2 (Neomarkers, Fremont, CA) was applied at 1:300 dilution. As ERBB2 analysis was not routine at the time of diagnosis for the majority of Swedish cases, a subset of 97 tumors were evaluated for ERBB2 status using the A0485 antibody (DakoCytomation, Glostrup, Denmark) at 1:1,000. All immunohistochemistry was done using the DakoCytomation TechMate 500 Plus staining system using sodium citrate pH 6.0 antigen retrieval buffer, manufacturer's recommended reagents and standard microwave streptavidin immunoperoxidase protocol, with the exception that anti-PTEN antibody was applied for 2 hours. PTEN staining intensity scores for invasive tumor and nonneoplastic cells were recorded by two independent pathologists (J. Enoksson and H. Hibshoosh) essentially as described in ref. (11) with further details in the Supplementary data. ERBB2 membranous staining was scored (H. Hibshoosh) according to the DAKO system scale: 0, 1+, 2+, 3+, with 0/1+ recorded as ERBB2 negative (ERBB2), and 2+/3+ recorded ERBB2 positive (ERBB2+).
PCR and sequence analysis. Sequencing of PIK3CA exons 1, 2, 4, 5, 7, 9, 12, 13, 18, 20, including intron-exon boundaries was done by PCR amplification and direct sequencing of both strands for all tumors as previously described (6) with some modifications. The Swedish series were also analyzed for mutations in PTEN exons 1 to 9 including intron-exon boundaries. Further details are described in the Supplementary data.
Statistical analysis. The Pearson
2 test was used for correlation analyses with a P < 0.05 used as the cutoff for decisions of statistical significance.
| Results and Discussion |
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In the Swedish cohort, PTEN protein expression and mutational status were determined. A larger set of 343 stage II cases (9) were evaluated by immunohistochemistry, of which 55 were scored PTEN negative (PTEN, little to no tumor staining in relation to normal cells on the same tissue section), and in agreement with the literature (12, 13) PTEN protein expression was significantly correlated to ER and PR positivity (P < 0.0001 and P = 0.001, respectively; data not shown; Fig. 2). From this larger set, 48 of the PTEN tumors were selected for this study based on availability of snap-frozen tumor biopsies, and roughly matched to 109 PTEN+ (relatively equal tumor PTEN protein levels when compared with internal control normal cells) tumors, with respect to node and ER status where possible; five cases with undetermined PTEN protein status were also selected and subsequently one PTEN case was excluded due to bad sequence (Table 1). Correlation analysis between PIK3CA mutations to PTEN IHC status revealed a highly significant association, in that the majority of PIK3CA mutations were found in PTEN+ cases (P = 0.0066; Table 2). All nine exons of PTEN were sequenced in these cases and eight mutations were found (5%). This was not surprising, because in sporadic breast cancer PTEN is infrequently altered via mutation (14, 15). Nevertheless, combination of the PTEN mutation data with the PTEN expression data improved the inverse correlation between PIK3CA mutations and abrogated PTEN (PTEN and PTEN mutants counted together; P = 0.0037; Table 2). Surprisingly, two tumors were double mutants for PIK3CA and PTEN: PIK3CA H701P with a PTEN exon 5 frame-shift truncation mutation, and PIK3CA C420R with a PTEN exon 7 frame-shift truncating mutation. Mutational status of these two cases was rigorously verified (see Supplementary data).
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We were interested in testing the relationship between PIK3CA mutational status and other known clinicopathologic markers (Table 2). We found PIK3CA mutations to be highly correlated to lymph node involvement (N+), ER positivity (ER+), and PR positivity (PR+; P = 0.0375, P = 0.0001, P = 0.0063, respectively), three clinical markers associated to patient survival and response to therapy (16, 17). This is in contrast to Bachman et al. who found no correlation to ER/PR in their study (8), which may be due to their small sample size compared with the present study. When only analyzing the stage II tumors from both Swedish and Columbia cohorts together, the correlations to node, ER, and PR status improved (P = 0.0239, P < 0.0001, and P = 0.0041, respectively; Table 2). This is not unexpected given the known associations between tumor stage and ER/PR and node status. Moreover, PIK3CA mutations were significantly associated with ERBB2 overexpression (P = 0.0415), another predictive marker in breast cancer (18), and the correlation was more significant when testing only stage II cases (P = 0.0371; Table 2). This result is also in contrast to Bachman et al. who found no correlation to ERBB2 staining (8).
The frequency of PIK3CA mutations in several clinically relevant groups is worth highlighting. Approximately 33% of tumors positive for either ER, PR, node involvement, or ERBB2 harbored PIK3CA mutations (Table 2). Given the strong correlations to individual markers, it is not surprising that the mutation rate increased when we investigated subgroups defined by more than one marker (e.g., to 45% in ER+/ERBB2+ stage II tumors); in contrast, <7% were mutated among ER/ERBB2 tumors (P = 0.0002, n = 64, data not shown). In both the ER+/ERBB2 and ER/ERBB2+ subgroups, the mutation frequency was the same as the overall mutation rate (26%) in the complete data set (data not shown). As expected, analyzing further refined subgroups made the differences in mutation rate more extreme: 58% among ER+/ERBB2+/N+ stage II cases versus less than 14% in ER/ERBB2/N (P = 0.0062, n = 34, data not shown). It is also worth noting the distribution of clinical markers among PIK3CA mutants: 95% were PTEN wild type, 86% PTEN+, 78% ER+, 68% N+, 65% PR+, and 48% ERBB2+ (Table 2).
The correlations between PIK3CA mutations and PTEN, ER/PR, node, and ERBB2 status present interesting questions. The observation that ER+/PR+ tumors more often have PIK3CA mutations whereas ER/PgR tumors more often have loss of PTEN may reflect differences in pathogenesis and disease progression between hormone receptor positive and negative tumors, thereby defining two separate branches of breast tumor development. Furthermore, our finding that PIK3CA mutations correlate with node metastasis and a report showing PTEN loss also associated with node metastasis (13) suggest that increased PIP3 production and activation of the PI3K/AKT pathway may enhance invasion of cancer cells to lymph nodes. This last postulation is corroborated by the findings that PTEN inhibits cell migration (19), and that PIP3 regulates cell motility (20). Lastly, our result that PIK3CA mutations correlate to ERBB2 overexpression argues that multiple positive inputs on the pathway may be needed to overcome intact PTEN (notably, both PIK3CA/PTEN-double mutants are ERBB2). This is clinically significant as intact PTEN is required for therapeutic response to Herceptin (21). Identification of the tumors that are ER+/ERBB2+ and PIK3CA mutation positive, a group likely to have normal PTEN, and treatment with a combination of drugs against the ER, ERBB2, and PIK3CA pathways is a therapeutic approach that should be explored.
Given the significant association of PIK3CA mutations to four clinical markers with varied prognostic implications, ER+ and PR+ (good prognosis), and N+ and ERBB2+ (bad prognosis), we did survival analyses. No significant associations were found between PIK3CA mutational status and distant disease-free survival, recurrence-free survival, or overall survival within all tumors, or when stratified by cohort, stage, lymph node, or ER status (data not shown). It is possible that the association of PIK3CA mutations to good and bad prognostic markers dilutes its association to outcome. Moreover, our selection of tumors was not ideal for survival analysis, as the Swedish set were matched on node and ER status, the Columbia cohort had varied clinical therapies and the duration of follow-up may not have been long enough (Table 1). PIK3CA mutations were not associated with tumor size, stage, ploidy, or S-phase fraction (data not shown).
In conclusion, in our study of PIK3CA mutations in a large set of breast cancers and breast cancer cell lines, we uncovered a mutation rate of 26%. We found PIK3CA mutations in all stages of breast cancer, indicating that mutations are an early event in carcinoma development. To determine the relationship between PIK3CA mutational status and PTEN function, we analyzed a subset of our primary tumors for the expression of PTEN protein and for the presence of PTEN mutations. We report that PIK3CA tumor mutations correlate to intact PTEN, lymph node metastasis, and expression of ER, PR, and ERBB2. We did not find any association with survival, although further study of material better suited for such analysis is warranted and is currently under way. We provide evidence for two separate paths for breast tumor development: hormone receptor positive with PIK3CA mutations and hormone receptor negative with PTEN loss. Taken together with the observation that 15% to 35% of breast cancers have loss of PTEN expression, our data would suggest that at least half of all breast cancers have deregulated production of PIP3. When including aberrations in other upstream and downstream members of the pathway, such as ERBB2 and AKT, it would seem that the majority of breast tumors have activation of the pathway, making this pathway an attractive target for pharmacologic interventions and highlighting the importance of molecular profiling for personalized medicine. In particular, directed small molecule antagonism of PIK3CA proteins may be an effective measure for the treatment of breast cancer, regardless of whether it has a PIK3CA mutation or a loss of PTEN protein expression. It is interesting to note that many forms of human cancer have high frequency inactivation of PTEN and activation of PIK3CA. Given that alterations of these two genes tend to be mutually exclusive, it is likely that a very substantial proportion of most common malignancies such as carcinomas of the breast, lung, colon, and prostate have selected for activation of the PI3K pathway.
Note added in proof. Since we submitted this report, Campbell et al. have published a PIK3CA mutational study including 70 primary breast tumors but found no association to histologic subtype, grade, ER or node status (22).
| Acknowledgments |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
We thank the participating departments of the South Sweden Breast Cancer Group for providing samples; Vladan Miljkovic, Kristina Lövgren, Eva Rambech, and Carina Strand for expert technical assistance; John Jakob for tissue culture work; Ita Horan and Linda Lowenstein for administrative services; Susan Kistler for data retrieval assistance; and Sofia Gruvberger-Saal for helpful discussions.
| Footnotes |
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Å. Borg and R. Parsons share senior authorship.
Supplementary data for this article are available at Cancer Research Online (http://cancerres.aacrjournals.org).
9 Y. Samuels, personal communication. ![]()
Received 11/ 1/04. Revised 12/17/04. Accepted 12/30/04.
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