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Molecular Biology, Pathobiology, and Genetics |
Department of Pathology and UCSF Comprehensive Cancer Center, University of California San Francisco, San Francisco, California
Requests for reprints: Thea D. Tlsty, Department of Pathology and UCSF Comprehensive Cancer Center, University of California San Francisco, 513 Pamassus Avenue, HSW 451, Box 0511, San Francisco, CA 94143. Phone: 415-502-6115; Fax: 415-502-6163; E-mail: thea.tlsty{at}ucsf.edu.
| Abstract |
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| Introduction |
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In breast carcinogenesis, the earliest sequence of mutational events is poorly understood. DNA hypermethylation of the p16 promoter, which is known to silence gene expression, has been identified in foci of histologically normal breast epithelium (4). In vitro experiments have linked this silencing of p16 to both telomeric and centrosomal dysfunction (46). Hence, it has been hypothesized that inactivation of p16 may be a very early event in carcinogenesis that precedes histologic changes within the tissue (4, 7). Inactivation of p16 has not been investigated in the ensuing premalignant breast lesions to any great extent. In contrast, inactivation of p53 is first observed in high-grade ductal carcinoma in situ, a late-stage premalignant lesion (8). Analysis of premalignant lesions such as atypical ductal hyperplasia or low-grade ductal carcinoma in situ has not revealed a significant frequency of p53 mutations (8, 9). In light of these data, we propose that inactivation of p16 precedes inactivation of p53 during early breast carcinogenesis. Mechanistically, we hypothesize that inactivation of p16 increases p53 activity and this increased activity may promote the inactivation of p53. To test this hypothesis, we have used primary human mammary epithelial cells (HMEC) as a model to examine the dynamic interactions between these tumor suppressor pathways.
HMEC can be isolated and propagated in culture from human breast tissue explants from disease-free women (10). These cultures contain two cell populations with distinct proliferative capacities. The majority population, HMEC, cultured under standard conditions, have a life span of 10 to 15 population doublings before reaching a growth plateau characterized by induction of p16 expression and G1-phase cell cycle arrest (1113). The minority population, variant HMEC (vHMEC), have an extended life span (30-50 additional population doublings) and become visible when the HMEC population enters the proliferative arrest characterized by elevated p16 levels. The extended proliferative capacity of vHMEC correlates with silenced p16 gene expression due to promoter DNA hypermethylation and the repression of p16 promoter activity (1113). It has been shown that both cell populations have wild-type (wt) p53 protein as shown by sequencing and functional analysis (14). In this study, we investigate if inactivation of p16 in primary human cells has functional consequences on p53 biology.
| Materials and Methods |
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Plasmids and retroviral gene transfer. The pBabe-puro retroviral vector construct and human p16INK4a cDNA were a gift from Frank McCormick (UCSF Comprehensive Cancer Center, University of California San Francisco, San Francisco, CA). p16 cDNA was subcloned into pBabe-puro vector between BamH1 and Sal1. The pMSCV retroviral construct encoding the p16-specific short hairpin RNA (sh-p16) under the control of the U6 promoter was generously provided by G. Hannon and S. Lowe (Cold Spring Harbor Laboratories, Cold Spring Harbor, NY). The pBabe-puro retroviral construct encoding dominant-negative p53 (GSE22) was a gift from Andre Gudkov (Department of Molecular Genetics, Lerner Research Institute, Cleveland, OH). The LXSN-E7 construct was provided by Denise Galloway (Cancer Biology, Fred Hutchinson Cancer Research Center, Seattle, WA). Amphotropic retrovirus was produced by transfecting Phoenix-A packaging cells using Lipofectamine 2000 (Invitrogen, Carlsbad, CA). Forty-eight to 72 hours posttransfection, virus-containing culture medium was harvested and filtered through 0.45-µm syringe filters. Cells were infected by exposing them to virus-containing medium in the presence of 4 µg/mL Polybrene (Sigma-Aldrich, Milwaukee, WI) for 6 to 10 hours. Cells were maintained in the appropriate medium for 48 hours postinfection, then transferred to medium containing 2 to 4 µg/mL puromycin (Sigma). Experiments were done 4 to 6 days postinfection to allow selection for cells that exhibit puromycin resistance.
Western blot analysis. Cells were lysed with radioimmunoprecipitation assay buffer or buffer containing 160 mmol/L Tris and 2% SDS supplemented with 1x Complete protease inhibitors (Roche Applied Science, Indianapolis, IN). Protein concentration was determined with bicinchoninic acid (Pierce Biotechnology, Rockford, IL) with bovine serum albumin as the standard (Sigma). Protein from total cell extracts was denatured with 1x loading buffer and then fractionated in gradient (4-20%) polyacrylamide gels (Cambrex) and transferred to Hybond-P (GE Healthcare Bio, Piscataway, NJ) membrane. The following monoclonal antibodies were used to stain the blots: mouse anti-p16 (Ab-4; Lab Vision, Fremont, CA), mouse anti-p53 (DO-1; Santa Cruz Biotechnology, Santa Cruz, CA), mouse anti-p21 (OP64; EMD Biosciences, San Diego, CA), mouse anti-pRb (BD Biosciences, San Jose, CA), mouse anti-E2F1 (Upstate Biotechnology, Lake Placid, NY), mouse antimurine double minute-2 (MDM2; SMP14, Santa Cruz Biotechnology), mouse anti-ß-actin (AC-15; Sigma), and horseradish peroxidaseconjugated goat anti-mouse antibody (Biomedia Corp., Foster City, CA). ß-Actin was used as a loading control for all blots. Proteins (5-20 µg) were analyzed for each sample. Staining was developed with SuperSignal West Pico chemiluminescence detection protocol (Pierce). Images were quantified using ImageQuant software.
Radiation treatment. Cells were plated in 60-mm dishes and irradiated with the indicated dose of
ionizing radiation from a 137Cs source at 281 rad/min. Culture medium was changed following treatment and protein samples were collected 3 hours post ionizing radiation.
Cell cycle analysis. Cells were metabolically labeled with 10 mmol/L bromodeoxyuridine (BrdUrd) for 4 hours before harvest. Cells were isolated by standard trypsinization, resuspended in PBS, and fixed by addition of ice-cold ethanol to a final concentration of 70%. Nuclei were isolated and stained with propidium iodide and FITC-conjugated anti-BrdUrd antibodies (BD Biosciences; ref. 5). Flow cytometry was done on a FACS-Sorter (BD Biosciences) using CellQuest and Flowjo software for analysis. All analyzed events were gated to remove debris and aggregates. A minimum of 30,000 events were collected for each analysis.
Reverse transcription-PCR. Total RNA samples were isolated with Rneasy Mini Kit (Qiagen, Valencia, CA) as per instructions of the manufacturer. Total RNA (1.5 µg) was used for the first strand cDNA synthesis with Superscript First-Strand Synthesis System (Invitrogen). Following reverse transcription, 2 µL of each sample were subjected to p53-specific PCR with Expand High Fidelity kit (Roche Applied Science). The PCR products were viewed by running on a 2% agarose gel. The primers for p53 were antisense, 5'TCAGTCTGAGTCAGGCCCTTC-3', and sense, 5'ATGGAGGAGCCGCAGTCAGAT-3'.
Real-time PCR. Total RNA samples were isolated with Rneasy Mini Kit (Qiagen) as per instructions of the manufacturer. cDNA was synthesized from 2 µg of total RNA with TaqMan Reverse Transcription Reagents (Applied Biosystems, Foster City, CA) as per instructions of the manufacturer. Real-time PCR was done on 5-ng input RNA per reaction containing 1x TaqMan Universal PCR Master Mix (Applied Biosystems) and the appropriate TaqMan probe on the DNA Engine Opticon 2 (MJ Research, Inc., Waltham, MA). p14ARF (Hs00924091_m1) and GUSB (Hs99999908_m1) TaqMan probes were purchased from Applied Biosystems. All samples were analyzed in triplicate on each plate and at least three plates were analyzed. Relative mRNA levels were determined using the relative standard curve method (normalized to GUSB) according to Applied Biosystems User Bulletin #2.1 The graph represents the average and SD from nine replicates for each sample (three replicates on three plates).
| Results |
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Although p53 function is regulated in many ways, up-regulation of wt p53 is known to limit the expansion of populations of cells by inhibiting cell cycle progression or inducing apoptosis. We sought to determine if the elevated levels of p53 protein in vHMEC limit the expansion of this population by comparing the population doublings of vHMEC and vHMEC expressing GSE22. We found that inactivation of p53 resulted in a population with twice as many cells within a specified time (Fig. 2C). This increased population expansion could be attributed to an increase in proliferation or a decrease in apoptosis. To measure the amount of proliferation, we analyzed the fraction of cells in the S phase of the cell cycle by flow cytometry with BrdUrd incorporation. We found that vHMEC expressing GSE22 have twice as many cells in S phase of the cell cycle compared with vHMEC controls (Fig. 2C, 24% versus 48%). In contrast, the level of apoptosis between vHMEC and vHMEC expressing GSE22 remained unchanged (data not shown). These data indicate that the elevated p53 protein level mediated by the lack of p16 expression reduces proliferation and thereby represses the expansion of the population.
p16 activity modulates a p53-dependent stress response. In response to DNA damage, p53 protein is stabilized and activates cell cycle checkpoints or initiates apoptosis to ensure that damaged cells do not propagate. To determine if inactivation of p16 modulates the response of p53 to DNA damage, we measured the kinetics of p53 protein accumulation in HMEC and HMEC expressing sh-p16 in response to
ionizing radiation. In vector control HMEC, p53 protein levels increased
4- and 12-fold following exposure to 4 and 10 Gy of ionizing radiation, respectively (Fig. 2D). In contrast, in HMEC expressing sh-p16, p53 protein levels increased
14- and 20-fold following exposure to 4 and 10 Gy of ionizing radiation, respectively (Fig. 2D). These data indicate that reduced levels of p16 protein produce a more robust activation of p53 in response to ionizing radiation.
Increased p16 activity decreases p53 protein stability. We sought to determine how p16 modulates p53 protein levels. Because the protein level of p53 is primarily regulated through posttranslational mechanisms that modulate protein stability, we first measured p53 protein half-life in HMEC and vHMEC. We found that the half-life of p53 is twice as long in vHMEC compared with isogenic HMEC (a half life of 3 hours versus 1.5 hours, respectively; data not shown; ref. 14). Because the half-life of p53 was reduced in the cells that express p16, we asked whether p16 promotes proteasome-mediated degradation of p53. We found that inhibition of the proteasome by MG132 increased p53 protein levels in vHMEC overexpressing exogenous wt-p16 (Fig. 3A ). Similarly, proteasome inhibition increased p53 protein levels in HMEC expressing endogenous p16 (Fig. 3B). Thus, in both cell populations, the HMEC expressing endogenous p16 and the vHMEC overexpressing exogenous wt-p16, p53 protein levels are regulated by p16 through a proteasome-dependent mechanism. To determine if p53 mRNA expression was also regulated by p16 activity, we measured p53 mRNA levels by reverse transcription-PCR (RT-PCR). In vHMEC overexpressing exogenous wt-p16, p53 mRNA level was minimally altered compared with that in uninfected and vector control cells (Fig. 3C). These data show that p16 expression decreases p53 protein stability predominantly via a proteasome-dependent mechanism.
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p16 down-regulation of p53 is cell type specific. We have shown that in HMEC, p16 activity regulates p53 protein stability. To determine if this regulation occurs in other cell types, we modulated p16 levels in isogenic HMF. Whereas expression of sh-p16 in HMF decreased p16 protein levels (up to 90%), the p53 and p21 levels were not dramatically altered (Fig. 5A ). Similarly, when wt p16 was overexpressed in HMF, p53 and p21 levels did not change significantly (Fig. 5B). To determine if these observations are unique to HMF, we examined human foreskin fibroblasts. Similar to our observations with HMF, p53 levels are not modulated by down-regulation of p16 using sh-p16 (Fig. 5C). We next investigated if inactivation of p16 in HMF sensitized the cells to DNA damage as was observed in epithelial cells. The kinetics of p53 and p21 protein accumulation were examined in HMF and HMF expressing sh-p16 following exposure to 1, 4, 8, and 10 Gy of ionizing radiation. In contrast to our observations in epithelial cells, the kinetics of p53 stabilization are similar in both control and sh-p16 HMF (Fig. 5D). We conclude that p16 does not modulate basal levels of p53 or induced levels of p53 in response to DNA damage in fibroblasts as observed in epithelial cells. Thus, we conclude that regulation of p53 by p16 is cell type specific.
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| Discussion |
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50% inhibition, depending on the specific infection, and the p53 level is always dramatically increased (data not shown). In mouse models, p16 has been shown to be haploinsufficient for tumor suppression and we believe that our modest decrease in p16 protein level may mimic haploinsufficiency and show that p16 is haploinsufficient for suppressing p53. The p16 and p53 pathways are important for the activation of senescence. Senescence is a permanent cell cycle arrest that acts as a barrier to immortalization and tumorigenesis and can be induced by a variety of stimuli, including oxidative stress, DNA damage, oncogene activation, and aging. Although senescence has been studied primarily in vitro, it has recently been shown that senescence is also a barrier to tumorigenesis in vivo (2326). Senescence markers were identified in premalignant lesions, which supports the hypothesis that bypass of senescence may be an early event in carcinogenesis (26). Whereas p16 and p53 are both involved in the activation of senescence, these proteins seem to function in separate pathways. For example, oncogenic Ras induces a p16-dependent senescence (27) whereas oncogenic phosphatase and tensin homologue (PTEN) induces a p53-dependent senescence (25). Additionally, during the senescence of human skin fibroblasts induced by extended proliferation in culture, two distinct populations of cells are identifiable (28). One cell population has elevated p53 and p21 protein levels, exhibits markers of DNA damage and shortened telomeres, and does not have elevated p16 protein levels. The other population has elevated p16 protein levels, does not exhibit markers of DNA damage or shortened telomeres, and does not have elevated p53 or p21. The ability of p16 activity to modulate p53 activity adds another layer of complexity to the initiation of senescence and the ability to bypass senescence. Our results suggest that activation of p16-dependent senescence may inhibit p53-dependent senescence. Conversely, bypass of p16-dependent senescence, through inactivation of p16, may promote the activation of a p53-dependent arrest.
The results described here also provide new insight into how inactivation of p16 may be a critical early event that influences subsequent oncogenic events. This study has shown that reduced levels of p16 can increase p53 protein level and functions. This elevated p53 function may allow the cell to compensate for loss of p16-dependent checkpoints; however, sustained up-regulation of p53 activity may also increase the selective pressure to inactivate p53. We have shown that inactivation of p53 in a cell that has already reduced p16 expression provides a proliferative advantage, and inactivation of p16 has previously been shown to promote genomic instability (5, 29). Therefore, inactivation of p16 provides both a selective pressure (elevated p53) and a mechanism (genomic instability) to inactivate p53, and this may be a driving force during carcinogenesis.
We hypothesize that inactivation of p16 may initiate a sequence of events during early carcinogenesis where inactivation of p53 follows inactivation of p16. Although very little is known about the early events in breast carcinogenesis, other organ systems do provide support for this hypothesis. An elegant set of experiments by Maley et al. (3) examined tissue from Barrett's esophagus and determined that inactivation of p53 is found almost exclusively (14 of 15 cases) in cells that have already inactivated p16 and that this subsequent inactivation of p53 predicts progression to esophageal adenocarcinoma (30). These experiments show a sequence of events in Barrett's esophagus where inactivation of p16 precedes inactivation of p53 and subsequent tumor progression. To our knowledge, modulation of p53 by p16 has not been investigated in esophageal epithelial cells, and thus our results may help explain why inactivation of p16 precedes inactivation of p53 in Barrett's esophagus. We suggest that this sequence of events may occur in breast carcinomas and other tumor types (e.g., pancreas and head and neck) because the frequently observed inactivation of p16 may promote the inactivation of p53.
We have shown that reduced levels of p16 protein increase the p53 response to radiation. An implication of these findings is that p16 expression alters the cellular response to genotoxic damage and may modify radiation toxicity. Because foci of cells with silenced p16 have been found in normal human tissues (4) and loss of p16 activity via deletion, mutation, or methylation often occurs during tumor progression (1), these observations could have implications for the response to genomic damage in normal, premalignant, and tumor tissue.
Finally, we have observed that p16 modulates p53 in HMEC but not in fibroblasts. Our data indicate that the signaling pathway between p16 and p53 is context dependent and is regulated by either extrinsic microenvironmental conditions or intrinsic cell type specific factors. If this pathway is regulated extrinsically by microenvironmental conditions, then the conditions that modulate this important pathway need to be identified. The conditions that are known to induce p16 expression include DNA damage, oncogenic stress, and oxidative stress. There are arguments that HMEC are cultured under "stressed" conditions (31, 32), and if the interaction we have observed occurs during stress-induced conditions, it is very relevant to p53 function and the carcinogenic process. It is appreciated that tumors frequently form under conditions that could be equated with "stress" (i.e., chronic injury; ref. 31). It will be interesting to determine if we have identified "stressful" conditions that can dramatically alter the interaction between p16 and p53 signaling and if similar conditions occur in vivo.
If the signaling pathway between p16 and p53 is regulated intrinsically in a cell type specific manner, then results obtained in one cell type may not be directly applicable to others. Because epithelial cells and fibroblasts have very different roles in response to damage and stress, it should not be surprising that key damage and stress response pathways would be regulated in a cell type specific manner. Cell type specific signaling adds an additional layer of complexity to our understanding of carcinogenesis but may provide new directions for therapeutic targets. Additionally, our results in HMEC indicate that inactivation of p16 may increase the selective pressure to inactivate p53. If this effect occurs in epithelial cells but not in fibroblasts, this could partially explain the preponderance of carcinomas (epithelial origin) that occur in humans compared with sarcomas (fibroblast origin).
| Acknowledgments |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
We thank members of the Tlsty lab for moral support, technical support, and helpful discussions; K. McDermott for critical reading of the mauscript; Dr. Phil Coffino and his lab for shared equipment and expertise; Scott Lowe, Greg Hannon, Frank McCormick, Denise Galloway, and Andre Gudkov for kindly providing reagents; and Karen Chew for acquiring human tissue.
| Footnotes |
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1 http://www.appliedbiosystems.com. ![]()
Received 5/ 2/06. Revised 8/ 7/06. Accepted 8/25/06.
| References |
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