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Molecular Biology, Pathobiology, and Genetics |
Departments of Human Genetics and Pediatrics, McGill University Health Centre-Montreal Children's Hospital, Montreal, Quebec, Canada
Requests for reprints: Rima Rozen, Montreal Children's Hospital Research Institute, 4060 Ste. Catherine West, Room 200, Montreal, Quebec, Canada H3Z 2Z3. Phone: 514-412-4358; Fax: 514-412-4331; E-mail: rima.rozen{at}mcgill.ca.
| Abstract |
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| Introduction |
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5% of the population and that figure increases to 50% if nonmalignant tumors are included. The majority of cases are sporadic and due largely to environmental factors. Hereditary forms may account for up to 15% of all colorectal cancers (1). An insufficient dietary intake of folate has been associated with increased risk for the development of colorectal cancer. Studies suggest a 30% to 40% reduced risk in individuals consuming high dietary folate compared with those with low dietary folate (2). Because one-carbon units within the folate metabolic pathway are required for conversion of dUMP to dTMP and for the conversion of homocysteine to methionine, dietary folate deficiency can reduce availability of methyl groups for DNA repair/synthesis and for methylation reactions. Abnormal DNA methylation patterns are commonly observed in a wide variety of tumors and are associated with altered expression of tumor suppressor genes or oncogenes. Insufficient conversion of dUMP to dTMP can also increase uracil misincorporation into DNA, which leads to double-strand breaks. These breaks can result in the formation of chromosomal abnormalities, such as translocations and gene amplification, which can disrupt gene expression and contribute to tumorigenesis (3).
Genetic disturbances in folate metabolism can also modulate risk for colorectal cancer. Methylenetetrahydrofolate reductase (MTHFR) synthesizes 5-methyltetrahydrofolate, the folate derivative used in homocysteine remethylation to methionine. A common variant in Mthfr (a C to T transition at nucleotide 677) results in a mild MTHFR deficiency that can confer protection against colorectal cancer when folate levels are adequate (4). However, this protection is not observed when dietary folate is low, and under these conditions, the variant may be associated with increased risk for colorectal cancer and other neoplasias (5).
To examine the mechanisms behind folate deficiency and the link to colorectal cancer, we and others have used the Apcmin/+ mouse model of intestinal neoplasia. These mice have a germ-line mutation in the adenomatous polyposis coli (Apc) gene, the same gene that causes a hereditary form of colorectal cancer in man (familial adenomatous polyposis; reviewed in ref. 1). Somatic mutations in the Apc gene have also been found in up to 80% of sporadic colorectal cancers (1). Other genetic models for colorectal cancer include transgenic mice with a disruption in the mismatch repair genes Mlh1 and Msh2 (6). The nongenetic models that have been used to study colorectal cancer include chemically induced models (administration of dimethylhydrazine and azoxymethane), which can be administered alone or in conjunction with bile acid cocarcinogens, nonspecific injury, and surgical procedures known to enhance risk for colorectal cancer (6).
Several studies have reported an influence of folate levels on tumor numbers in Apcmin/+ mice. These studies suggest that the timing of folate deficiency (or supplementation) may be critical. At early time points, folate supplementation may decrease polyp formation (7) and folate deficiency may increase tumor numbers in these mice (8). At later stages, folate supplementation may increase polyp number (7) and folate deficiency may decrease tumor numbers (8). We recently examined gene expression patterns by microarray analysis in Apcmin/+ mice and identified 90 known genes with altered expression in tumors compared with that in normal intestine (9).
To determine whether low dietary folate alone or in combination with a genetic disturbance in folate metabolism can initiate intestinal tumor development in mice, we fed control and folate-deficient diets to mice with and without a null allele in Mthfr (Mthfr+/ mice). We had generated these mice in earlier work and showed that they are a good animal model for mild MTHFR deficiency in humans (the 677TT genotype) because of the similarity in residual enzyme activity and the degree of hyperhomocysteinemia. We examined the intestine in mice after
1 year on diets and observed intestinal tumors in folate-deficient mice but not in mice fed control diets. From previous work in the Apcmin/+ mouse model, we had discovered that folate deficiency may induce expression changes in two genes involved in G2-M checkpoint control: polo-like kinase 1 (Plk1) and cell division cycle 25c (Cdc25c). We therefore examined expression of these two candidate genes for tumorigenesis in our spontaneous model to begin to address the mechanisms by which folate deficiency can lead to intestinal neoplasia.
| Materials and Methods |
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The entire intestines were removed and examined for tumors under a dissecting microscope. Tumors were dissected and either snap frozen or fixed in 4% paraformaldehyde with surrounding normal intestine. The remaining normal intestine was either frozen or fixed. Fifty-seven mice were fed the control diet (31 Mthfr+/+ and 26 Mthfr+/), and 80 mice were fed the folate-deficient diet (16 Mthfr+/+ and 64 Mthfr+/).
Microarray analysis. Microarray analysis of RNA from tissues of Apcmin/+ mice was reported in our earlier publication (9), which examined changes in gene expression between the normal intestine and tumors under several conditions. In this study, we compared the data by grouping the normal intestine data into control diet and folate-deficient diet groups and the folate-deficient diet data into normal intestine and tumor groups. The same analytic method was used as that in our previous report (9). This method was based on averaging probe set intensities for probes with a "present" call for all samples within the test group and dividing it by the average intensity for "present" probe sets for the control group to give a numerical fold change. Any fold change greater than two with an absolute difference >200 between the average probe intensities of the two groups was considered significant. Analysis of numerical fold changes between the four pairs of mice did not reveal any interesting results; a different approach was therefore adopted. The Affymetrix Microarray Suite 5.0 (MAS5, Santa Clara, CA) analysis that had been done on these arrays provides an overall indicator of the binding ability of a probe by giving a probe set a call value of "present" if the probe set binds above a certain threshold and if the binding is significantly higher for the specific probe compared with the mismatch control probe. An "absent" call indicates one of two situations: either the specific probe binding signal is equal to that of the mismatch control or the mismatch control has no signal and the specific probe intensity is below threshold (i.e., too low to reliably detect). The latter situation can arise if the probe was indeed specific, but the transcript levels were very low/undetectable. We therefore hypothesized that if a probe set had a consistently "absent" call in all replicates of one group and a consistently "present" call in all replicates of the comparison group, then it could be assumed that the expression of the gene product was altered.
RNA extraction from normal intestine. RNA was isolated from 50 mg snap-frozen normal intestine of mice on control and folate-deficient diets using the Trizol reagent (Invitrogen, Burlington, Ontario, Canada) according to the manufacturer's protocol. RNA was treated with 10 µL DNase I for 30 minutes before reextraction with equal volumes of a 25:24:1 mixture of phenol-chloroform-isoamyl alcohol. RNA pellets were washed in 75% ethanol and redissolved in diethylpyrocarbonate (DEPC)-treated water.
Laser capture microdissection and RNA extraction. Frozen tumors and normal intestines were sectioned from OCT (Sakura Finetek, Torrance, CA) blocks, cut into 7-µm sections, and kept at 80°C until use. A tumor section and a normal intestinal section from the same mouse were thawed in 75% ethanol for 30 seconds and in DEPC-treated water for 30 seconds and then stained with hematoxylin for 2 minutes. Slides were immersed in bluing solution for 30 seconds, in 70% ethanol for 30 seconds, and in 95% ethanol for 30 seconds and stained for 5 seconds in eosin. Slides were then dehydrated by immersion in 95% ethanol twice for 30 seconds each, in 100% ethanol twice for 30 seconds each, and finally in xylene twice for 5 minutes each. All solutions and plasticware were treated with RNase Away (ICN Biomedicals, Irvine, CA) or DEPC-treated water to maintain RNA integrity. Laser capture microdissection was done using a PixCell II Laser Capture System (Arcturus Biosciences, Sunnyvale, CA) microscope with CapSure LCM caps (Arcturus Biosciences). RNA was extracted from dissected samples using the PicoPure RNA isolation kit (Arcturus Biosciences) according to the manufacturer's instructions and then treated with DNase I (Invitrogen). RNA quantitation was done using the RiboGreen RNA quantitation reagent and kit (Molecular Probes, Burlington, Ontario, Canada) according to the manufacturer's instructions.
Reverse transcription-PCR. RNA (2 µg) from normal intestine, extracted with Trizol, was reverse transcribed. From laser capture microdissected tissue, equal amounts of RNA (ranging from 6 to 29 ng), representing the maximum possible amount per pair, were used. Reverse transcription was done using SuperScript II reverse transcriptase (Invitrogen) and a random hexamer for 50 minutes at 45°C. The enzyme was deactivated by incubation at 72°C for 15 minutes. Real-time PCR was done using the SyberGreen kit (Invitrogen) according to the manufacturer's protocol in an Mx3000P QPCR system (Stratagene, La Jolla, CA). For every gene, the analysis of real-time data was done by using Ct values obtained across eight serial dilutions of the same sample and normalizing the values against the housekeeping gene glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Semiquantitative PCR was done on a Biometra T-gradient system (Montreal Biotech, Montreal, Quebec, Canada). PCR products were run on 9% acrylamide gels and stained with ethidium bromide. Gels were visualized on a Bio-Rad GelDoc 2000 imaging system (Bio-Rad, Mississauga, Ontario, Canada), and bands were quantified using Quantity One 4.0.1 software. Normalization between samples was done by comparison to GAPDH. Statistical significance was assessed by independent sample t test for comparison of normal intestine on the two diets or by paired sample t test for comparison of normal intestine with tumor.
Immunofluorescence. Intestines (with and without tumors), fixed in 4% paraformaldehyde, were embedded in paraffin and cut into 6- to 7-µm sections. Sections were treated according to the protocol provided by DakoCytomation, Inc. (Mississauga, Ontario, Canada). Protein block serum-free was used for the blocking step (DakoCytomation). One section per slide was incubated only with secondary antibody (negative control), and the other sections were covered in either a 1:50 (PLK1, phosphorylated histone H2AX), 1:800 (CDC25c), or 1:200 (phosphorylated CDC2) dilution of primary antibody in antibody diluent (DakoCytomation). All primary antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA), except for phosphorylated histone H2AX, which was purchased from Upstate Biotechnology (Lake Placid, NY). For visualization, slides were incubated with a 1:5,000 dilution of Alexa Fluor 488conjugated anti-rabbit secondary antibody (Molecular Probes). Slides were then washed in PBS and counterstained with a 1:3,000 dilution of a 1 µg/µL stock of propidium iodide (Molecular Probes) according to the manufacturer's protocol, rinsed again in PBS, dried, and mounted in Prolong Gold Antifade reagent (Molecular Probes). Imaging was done using the Zeiss AxioImager.Z1 with the AxioVision 40 version 4.5.0.0 imaging program (Carl Zeiss Imaging Solutions, Toronto, Ontario, Canada). For ease of viewing, Adobe Photoshop software was used to enhance the brightness of all pictures equally.
To quantify the number of double-strand breaks, the number of foci containing the phosphorylated form of histone H2AX was determined. This protein has been shown to form nuclear foci around sites of double-strand breaks; the foci are quantifiable when immunostained (14). A focus was defined as a concentrated spot of staining inside the nucleus. Three individuals blinded to sample identity counted the number of foci and total number of nuclei in three pictures taken at random per sample. All cell types were included in the counts (e.g., cells in the villi, crypts, and underlying connective tissue). The number of foci was averaged over the three pictures per sample and divided by total number of nuclei. The results of the three independent counts were averaged per sample to achieve the average number of foci per 100 cells. Independent sample t test was used to assess significance.
| Results |
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Identification of candidates by gene expression in Apcmin/+ mice on control and folate-deficient diets. In an earlier report (9), we had done microarray analysis of RNA from normal intestine and tumors of Apcmin/+ mice; the goal of that study was to identify candidates that could contribute to tumor growth in the Apcmin/+ model (9). These mice had been fed the same control and folate-deficient diets that were used in this study. We therefore compared the data from the normal intestine of Apcmin/+ mice fed control diet with data from the normal intestine of Apcmin/+ mice fed folate-deficient diet. The goal of this comparison was to identify selected candidates altered in expression by the folate-deficient diet that could then be examined in the tissues of our new spontaneous model of tumorigenesis described in this report. Application of the numerical fold change analysis did not yield readily interpretable results. We then included as a significant result all probe sets that displayed a consistent call value of "present" or "absent" for the control diet group and a consistent opposite call for the folate-deficient diet group. Using this approach, we found several interesting candidate genes that met these variables (Table 2 ). Although 12 genes were found to be consistently "present" in control diet normal intestines and "absent" in folate-deficient diet normal intestines, no genes were found for the reverse situation. Both Plk1 and Cdc25c were found to be "present" in the normal intestine of Apcmin/+ mice fed control diet and consistently "absent" in the normal intestine of Apcmin/+ mice fed folate-deficient diet (Table 2). Semiquantitative reverse transcription-PCR (RT-PCR) was used to confirm the expression changes of Plk1 in Apcmin/+ normal intestine of the two dietary groups. In four pairs of RNA, done in duplicate, Plk1 showed decreased expression with an average fold change of 1.77 ± 0.45, but the change was not statistically significant. Plk1 and Cdc25c are of interest because Plk1 is a regulator of Cdc25c in the DNA damage response pathway, and the aforementioned results with phosphorylated histone H2AX suggested that the folate-deficient diet was increasing DNA damage in the normal intestine of our mice. Plk1 is inactivated during the DNA damage response, whereas Plk1 activation is required for reentry into mitosis once DNA damage has been repaired (15). In undamaged cells, PLK1 activates CDC25c, which can proceed into the nucleus to dephosphorylate CDC2; CDC2 can then complex with cyclin B to initiate mitosis. Because folate deficiency seemed to have increased DNA damage, one might expect Plk1 inactivation to allow cells to repair DNA; the decrease in Plk1 mRNA by microarray and RT-PCR analyses was consistent with this hypothesis.
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Expression of Plk1 and Cdc25c RNA in spontaneous model of folate-dependent tumorigenesis. Our results in the Apcmin/+ model led us to believe that folate deficiency altered expression of Plk1 and Cdc25c, two important mitotic regulators. Furthermore, the Plk family of kinases is up-regulated in several cancers (1618), and human studies have shown an increase in Plk1 mRNA and protein levels in colorectal carcinoma (1922). We therefore examined expression of these genes in the normal intestines and tumors of our new mouse model.
Using quantitative RT-PCR, Plk1 and Cdc25c expression were assessed in six pairs of normal intestines from mice on folate-deficient diet and mice on control diet; three pairs were Mthfr+/+ and three pairs were Mthfr+/ mice. Plk1 and Cdc25c both showed decreases in expression in folate-deficient diet normal intestine; the changes were significant for Plk1 (1.41 ± 0.12; P = 0.045) and there was borderline significance for Cdc25c (1.61 ± 0.20; P = 0.06). These findings are consistent with those seen in Apcmin/+ mice.
Laser capture microdissection was used to isolate tumor tissue and normal intestine for RNA isolation and quantitative RT-PCR from three Mthfr+/ mice. Plk1 was found to be increased 11.6-fold (±5.1, SE) in tumors compared with normal intestine, whereas Cdc25c was found to be increased 3.1-fold (±1.8; Fig. 2B ). The changes in Plk1 RNA were significant (P < 0.02), whereas the changes in Cdc25c were borderline significant (P = 0.066) by paired t test.
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When comparing the immunostaining of the control diet (Fig. 3A and B, top row ) and folate-deficient diet (Fig. 3A and B, middle row) normal intestines, there seems to be a decrease in protein levels for both PLK1 and CDC25c corresponding to the RT-PCR results. The examination of immunoreactive proteins in tumor sections (Fig. 3A and B, bottom row) suggests that both proteins seem to have increased expression in tumor tissue compared with corresponding normal intestine (Fig. 3A and B, middle row).
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| Discussion |
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We have developed a new model of intestinal tumorigenesis due to a deficiency of dietary folate. Mice, with or without a mutation in Mthfr, can develop duodenal tumors after
1 year on the diet. We are not aware of other animal models that develop spontaneous intestinal tumors due to a dietary deficiency alone, without radiation/chemical induction or a germ-line mutation. Our findings provide a clear link between folate deficiency and tumor initiation. Although epidemiologic studies have shown an inverse relationship between folate intake and risk for colorectal cancer, there has been no definitive biological evidence to link folate deficiency and colon cancer (24).
In beginning to address the mechanisms of folate-induced tumorigenesis, we identified altered expression of two important G2-M checkpoint control genes, Plk1 and Cdc25c, in the normal intestine as well as in the tumors of folate-deficient diet mice. In normal intestine, both Plk1 and Cdc25c have decreased expression in folate-deficient diet tissue. We hypothesize that decreased folate leads to an accumulation of uracil due to decreased availability of 5,10-methyleneTHF, which is required for dUMP conversion to dTMP. The accumulation leads to uracil misincorporation into DNA and double-strand breaks, which increases risk for chromosomal abnormalities (25). DNA damage, such as double-strand breaks, will arrest the cell at the G2-M boundary by activating the ataxia-telangiectasia mutated (ATM)/ATM and Rad3-related (ATR) pathway. Indeed, our results show that the folate-deficient diet seems to increase the amount of double-strand breaks in the normal intestine as shown by increased formation of phosphorylated histone H2AX foci. Downstream targets of the ATM/ATR pathway include checkpoint kinases 1 and 2, both of which function to phosphorylate CDC25c on inhibitory residues, keeping it in an inactive conformation (23). PLK1 has also been shown to be inactivated by checkpoint kinase 1 during the ATM/ATR DNA damage response pathway; once the DNA damage has been repaired, PLK1 is necessary for reentry into mitosis (15). Because both Plk1 and Cdc25c are down-regulated in response to DNA damage (15, 23), it is reasonable to conclude that the observed decrease in their mRNA and protein levels in folate-deficient diet normal intestine is due to the normal response of the cells to the increase in DNA damage. Decreasing both Plk1 and Cdc25c results in cell cycle arrest, presumably to allow cells to repair their DNA before continuing into mitosis (15).
More interesting, however, is the large increase in mRNA and protein expression for both Plk1 and Cdc25c in tumor tissue compared with the surrounding normal intestine. The Plk family of kinases and Cdc25c are up-regulated in several cancers and are targets of several antisense and small-molecule inhibitors currently under investigation as antitumor agents (1618). Two studies have examined Plk1 mRNA (19, 20) or PLK1 protein (21, 22) levels in human colorectal carcinoma. Cdc25c levels (mRNA or protein) have not previously been examined in colorectal tumors. Our study links the overexpression of these two critical proteins in the initiation of intestinal carcinogenesis. In the folate-deficient diet normal intestine, Plk1 and Cdc25c are under tight regulation and seem to be responding in the expected way to DNA damage. However, under the extended chronic stress of folate deficiency and DNA damage, the tight regulatory mechanisms controlling their expression seem to break down, allowing increased expression and abnormal progression into mitosis.
The mechanisms that lead to increased expression of these genes require elucidation. One possibility is that the deregulation of Cdc25c expression is due to a decrease in p53 expression and/or function. The Cdc25c promoter has been shown to have consensus sequences that are responsive to p53, and increased p53 expression has been shown to down-regulate Cdc25c as would occur in response to DNA damage (26). It is possible that folate deficiency leads to decreased expression or increased mutation of p53, which would increase expression of Cdc25c and allow cell cycle progression. The corresponding increase in Plk1 expression could be explained by feedback mechanisms in the G2-M checkpoint (27). Another possible explanation for the aberrant expression of Cdc25c and Plk1 (or of p53) is abnormal DNA methylation. Many studies have shown that folate deficiency can alter methylation patterns in DNA, resulting in global DNA hypomethylation and regional promoter hypermethylation (28). In tumors, altered methylation patterns have been shown to affect expression of key growth control genes (29). For example, studies of hepatocarcinogenesis have revealed methylation changes within the p53 promoter region in livers of methyl-deficient rats (30).
In summary, dietary folate deficiency can initiate tumors in the intestine. The deficiency leads to increased DNA damage and decreased expression of Plk1 and Cdc25c in normal intestine presumably to repair the damage. However, the chronic stress leads to deregulation of these genes in the tumor and increases their expression, allowing cells to proceed to mitosis without cell cycle control. The establishment of a nutritionally deficient animal model for intestinal tumorigenesis provides the biological evidence for the important role of folate in prevention of colorectal cancer. The elucidation of the tumorigenic mechanisms in this more physiologically relevant model may lead to the design of novel therapies for this common cancer.
| Acknowledgments |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
We thank Dr. Nada Jabado and Damien Faury for their assistance.
Received 7/ 6/06. Revised 9/ 5/06. Accepted 9/11/06.
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This article has been cited by other articles:
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A K Lawrance, L Deng, and R Rozen Methylenetetrahydrofolate reductase deficiency and low dietary folate reduce tumorigenesis in Apcmin/+ mice Gut, June 1, 2009; 58(6): 805 - 811. [Abstract] [Full Text] [PDF] |
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D. Garcia-Crespo, E. Knock, N. Jabado, and R. Rozen Intestinal Neoplasia Induced by Low Dietary Folate Is Associated with Altered Tumor Expression Profiles and Decreased Apoptosis in Mouse Normal Intestine J. Nutr., March 1, 2009; 139(3): 488 - 494. [Abstract] [Full Text] [PDF] |
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E. Knock, L. Deng, Q. Wu, A. K. Lawrance, X.-l. Wang, and R. Rozen Strain Differences in Mice Highlight the Role of DNA Damage in Neoplasia Induced by Low Dietary Folate J. Nutr., April 1, 2008; 138(4): 653 - 658. [Abstract] [Full Text] [PDF] |
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