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Departments of 1 Oncology, 2 Drug Metabolism and Pharmacokinetics, 3 Enzymology and Mechanistic Pharmacology, 4 Medicinal Chemistry, MMPD CEDD, GlaxoSmithKline, Collegeville, Pennsylvania; 5 Department of Computational, Analytical and Structural Sciences, Discovery Research, GlaxoSmithKline, King of Prussia, Pennsylvania; 6 Department of Medicinal Chemistry, NGI CEDD, GlaxoSmithKline, Harlow, Essex, United Kingdom; 7 Abramson Family Cancer Research Institute and Abramson Cancer Center at the University of Pennsylvania, Department of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania; 8 Department of Gastroenterology in Shanghai Rui Jin Hospital, Shanghai Second Medical University, Shanghai, China; 9 Cambridge Research Institute/Cancer Research UK, Cambridge, United Kingdom; 10 Exelixis, Inc., South San Francisco, California; and 11 The Wistar Institute, Philadelphia, Pennsylvania
Requests for reprints: Denis R. Patrick, Department of Oncology, GlaxoSmithKline, Collegeville, PA 19426. E-mail: denis.r.patrick{at}gsk.com or David A. Tuveson, Cambridge Research Institute/Cancer Research UK, Cambridge, United Kingdom. E-mail: david.tuveson{at}cancer.org.uk.
| Abstract |
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| Introduction |
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The activation and amplification of growth factor signaling pathways are commonly observed in many cancers. The clinical utility of therapies targeted to the Erb family growth factor receptors (e.g., trastuzumab, gefitinib, erlotinib, and lapatinib) and Bcr-Abl (e.g., imatinib), shows the dependence of the cancer phenotype on the enzymatic activity of these oncogenes (reviewed in ref. 1). Recently, a subset of patients with lung tumors expressing mutant, activated forms of ErbB1, were shown to be the most responsive to targeted kinase inhibition by gefitinib (reviewed in ref. 2). This correlation, between the presence of an activating mutation in an oncogene and a positive response to an inhibitor, suggests that responding populations to a targeted therapy can be identified based on the genetic signature of the target in tumors.
The requirement for growth factor signaling in tumor cells can be replaced by activating mutations in downstream effectors of the signaling pathway. In particular, the KRAS gene is frequently mutated to activated forms in pancreatic cancer, and activated forms of the BRAF gene have been identified in a number of neoplasms, including melanoma, ovarian, colorectal, thyroid, cholangiocarcinoma, and lung adenocarcinoma (reviewed in ref. 3). Activating mutations in the regulatory domain of B-Raf, most frequently, V600E, bypass the need for growth factor stimulation and create a constitutively activated kinase that has a 500-fold higher kinase activity, relative to the basal activity of wild-type protein (4). Expression of the activated BRAF gene has been shown to be both sufficient and necessary to maintain tumorigenesis in experimental settings. Introduction of activated BRAFV600E into immortalized melanocytes is sufficient to impart a transformed phenotype (5) and ablation of BRAFV600E mRNA by RNA interference induces growth inhibition and cell death in human tumor cell lines that express activated B-Raf (6, 7). Although it is clear that knock-down of B-Raf protein by RNA interference can impede the survival of tumor cells, these experiments do not address the utility of an enzyme inhibitor for this kinase in tumor cells.
A potent and specific inhibitor of the B-Raf kinase, SB-590885, was evaluated as a candidate therapeutic agent in cell culture models and used here to address the significance of an activating BRAF mutation in cancer. Importantly, SB-590885 showed potent and selective growth inhibition of tumor cells harboring a mutant BRAF allele, both in human tumor cell lines and primary tumor samples, validating oncogenic B-Raf as an attractive therapeutic target in human malignancies.
| Materials and Methods |
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Cell lines. Human cell lines were obtained from the American Type Culture Collection (Manassas, VA), the Coriell Institute for Medical Research (Camden, NJ), and provided by M. Herlyn. BRAF mutations were determined by cDNA sequencing of the BRAF (GenBank accession no. M95712) mRNA isolated from growing cells using SuperScript III first-strand synthesis reverse transcription-PCR (Invitrogen, Carlsbad, CA) and HotStar Taq DNA polymerase (Qiagen). The primers used for amplification can be provided upon request. Amplicons were purified using Qiagen QIAquick PCR purification kits, sequenced with BigDye Terminator chemistry (Applied Biosystems, Foster City, CA). Newborn human melanocytes were prepared as described in http://www.wistar.org/herlyn/resource_culture_isolation.htm.
Biochemical and cellular assays. Western blot analysis was done as described using a LI-COR Odyssey IR imager (13). For proliferation assays, cells were treated with compounds in 0.1% DMSO and incubated for 72 hours at 37°C, 5% CO2. Viable cells were quantified using CellTiter-Glo reagent (Promega, Madison, WI) and luminescence detection on a Victor 2V plate reader (Perkin-Elmer, Turku, Finland). Cells were prepared for cell cycle analysis on a Becton Dickinson FACScan, according to the manufacturer's instructions. Data was acquired and analyzed using CellQuest v3.3 software. Anchorage-independent growth assays were done as described elsewhere (6), with inhibitors or DMSO vehicle included in the agar layer. Cultures were re-fed with media and inhibitor or DMSO every 5 to 7 days for a total of 28 days. Colonies were visualized and photographed by conventional light microscopy and quantified by counting on a grid in triplicate.
Spheroid preparation and growth assay. Human melanoma cells were isolated from metastatic lesions and grown to form spheroids, as previously described (14). Spheroid cultures were treated with compounds or DMSO and incubated for 72 hours. Metabolic activity was measured by conversion of the tetrazolium salt, WST-1 (Roche Diagnostics, Indianapolis, IN), in cultures for 4 hours at 37°C. Lack of metabolic activity in spheroid cultures was determined using the "Live/Dead cell kit" (Molecular Probes, Invitrogen, Carlsbad, CA), which does not distinguish between senescent cells and cells undergoing early apoptosis. Spheroids were photographed under inverted fluorescence microscopy using FITC/TRITC channels.
A375P xenograft model. The pharmacokinetic properties and safety of SB-590885, following i.p. injection, were determined and 50 mg/kg daily injections were found to give therapeutic levels with minimal body weight changes. Tumors were initiated in 8- to 12-week-old female nude mice by s.c. injection of 5 x 106 A375P cells in Matrigel suspension, and 3 weeks after tumor induction when the tumors had reached a volume of 150 to 250 mm3, mice were randomized into groups of eight prior to treatment. Animals were treated with vehicle [2% N,N-dimethylacetamide, 2% Cremophor EL, and 96% acidified water (pH
45)], or vehicle containing 50 mg/kg of SB-590885 daily for 21 days. A cohort of mice treated with SB-590885 were then observed an additional 14 days following cessation of treatment. Tumor volume was measured for 55 days by calipers twice weekly. All in vivo procedures were carried out in accordance with protocols approved by the GSK Institutional Animal Care and Use Committee.
| Results |
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-stacking interactions with the imidazole and pyridine rings of SB-590885. Furthermore, a tryptophan residue (W531) is located above the opposing face of the pyridine, also forming favorable
-stacking interactions. Additionally, the indane-oxime forms a strong interaction with the salt bridge of B-Raf as well as a hydrogen bond with a backbone amide in the activation loop, thus likely contributing to the selectivity and potency of SB-590885. The stabilization of an active conformation of B-Raf by SB-590885 is in contrast to the report that BAY 43-9006 binds to the inactive conformation of B-Raf (4), demonstrating an alternative means to inhibit B-Raf kinase. SB-590885 potently inhibits ERK phosphorylation and proliferation in tumor cells expressing B-RafV600E. The effects of B-Raf kinase inhibition on biochemical and cellular characteristics were determined by incubating cultures of normal and malignant human cell lines with SB-590885 (Fig. 2 ). Mitogen-activated protein kinase pathway inhibition was most apparent in established colorectal carcinoma (Colo205 and HT29) and melanoma cell lines (A375P, SKMEL28, and MALME-3M) that expressed B-RafV600E following brief incubation with SB-590885 (Fig. 2A and B; data not shown), whereas normal cells (HFF, HMEC, and PREC) and malignant cells not expressing mutant B-Raf (HT-1080, HCT-116, and SKMEL2) showed intermediate sensitivity or resistance. Furthermore, prolonged incubation with SB-590885 preferentially decreased the proliferation of cells expressing oncogenic B-RafV600E (Fig. 2B). As previously reported (17), the MEK inhibitor, CI-1040, also potently inhibited ERK signaling and proliferation in cells expressing BRAF mutations. However, in contrast to SB-590885, CI-1040 showed significant inhibition of ERK signaling and cellular proliferation in normal and malignant cells that do not express mutant B-Raf (Fig. 2A and B). Cell cycle analysis revealed that a G1 phase cell cycle block was the predominant mechanism of decreased proliferation, with only minimal induction of apoptosis and a cytostatic growth arrest apparent in adherent cell cultures (Fig. 2D; data not shown). A panel of normal melanocytes (newborn human melanocytes), early stage melanoma cells (RGP line WM-35), and primary melanoma cells (WM-NCI and WM-3434) also showed decreased phosphorylated ERK levels following treatment with CI-1040; and, as expected, only those cells harboring oncogenic B-RafV600E showed decreased ERK signaling following SB-590885 treatment (Fig. 2C). Interestingly, both normal melanocytes and primary melanoma cells that express wild-type B-Raf (WM-NCI) paradoxically showed increased phosphorylated ERK levels following brief incubation with SB-590885 (Fig. 2C). Importantly, the increased phosphorylated ERK levels in normal melanocytes did not correlate with any appreciable changes in the cell cycle profile, with partial G1 arrest noted at high concentrations of SB-590885 (Fig. 2D). Therefore, SB-590885 may represent an improved therapeutic approach for the treatment of tumors expressing oncogenic B-Raf, as it spares more normal cells compared with MEK inhibition, and it is the first B-Raf kinase inhibitor described with selectivity towards tumor cells expressing oncogenic B-Raf.
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5080% reduction in pERK levels; data not shown). The regrowth of tumors after treatment cessation is also consistent with work in cell culture, as tissue analysis showed no overt evidence of increased apoptosis (data not shown). Therefore, SB-590885 showed important characteristics of a targeted therapeutic by decreasing the transformed and tumorigenic properties of malignant cells expressing oncogenic B-Raf.
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| Discussion |
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SB-590885 inhibits B-Raf kinase enzymatic activity
100-fold more potently than the Raf/VEGFR inhibitor, BAY 43-9006. The structural basis of B-Raf inhibition by SB-590885 is due to stabilization of the active conformation of B-Raf by SB-590885, in contrast to stabilization of the inactive conformation of B-Raf by BAY 43-9006 (4). This alternative mechanism for kinase inhibition offers an additional method to target oncogenic B-Raf in patients with melanoma and the potential for overcoming generated resistance to inhibitors which bind to the inactive conformation of B-Raf, as has been shown for other oncogene-dependent malignancies (18).
Preferential inhibition by SB-590885 of biochemical signaling, proliferation, survival, and transformation was noted for human tumor cell lines expressing oncogenic B-Raf. The correlation between B-RafV600E expression and the inhibition of proliferation induced by SB-590885 was striking. Two tumor cell lines harboring mutant KRAS (HCT-116) or NRAS (SKMEL2) alleles exhibited moderate sensitivity to SB-590885 and the MEK inhibitor CI-1040, consistent with prior work (17). These data suggest a primary role for B-Raf as a downstream effector of Ras in these tumor cell lines. Importantly, little to no activity was observed for SB-590885 in three normal human cell types. The mechanism for the paradoxical increase in phosphorylated ERK in normal melanocytes and melanoma cells expressing wild-type B-Raf following treatment with SB-590885 (Fig. 2C) is currently unknown, but may reflect alterations in biochemical feedback inhibition loops (19, 20). Nonetheless, this change in the phosphorylation state for ERK did not correlate with increased cell proliferation in either case. In contrast, the MEK inhibitor, CI-1040, inhibited ERK phosphorylation and cellular proliferation in a wide array of malignant and normal cells in the panel tested. The lack of selectivity between the different tumor cell types and primary cells following treatment with CI-1040 is consistent with the fact that MEK is an effector of multiple signaling pathways in mammalian cells (9, 19), and predicts that direct B-Raf inhibition will be advantageous in the treatment of patients suffering from oncogenic BRAF-driven tumors. Therefore, by exhibiting this "genetic therapeutic index" towards mutant B-Raf-expressing malignant cells, SB-590885 represents an additional compound that should be considered in the clinical development of small molecule therapeutics targeting oncogenic B-Raf.
| Acknowledgments |
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We regret our inability to include many primary references due to space constraints. We gratefully acknowledge the valuable scientific discussions with our colleagues at GlaxoSmithKline, especially the members of Oncology NERD for stimulating discussion on drug discovery; the support of the University of Pennsylvania-GlaxoSmithKline ADDI (L. Wang, D.A. Tuveson), Wistar NCI-Specialized Programs of Research Excellence (M. Herlyn, K. Smalley, D.A. Tuveson), and the Samuel Waxman Cancer Research Foundation (D.A. Tuveson). D.A. Tuveson is a Rita Allen Foundation Scholar. We also thank Bonnie Orr and Gary Stelman for support in the mouse pharmacokinetic analysis.
| Footnotes |
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Received 7/11/06. Revised 10/ 4/06. Accepted 10/10/06.
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