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Molecular Biology, Pathobiology, and Genetics |
Institutes of 1 Toxicology and 2 Developmental Genetics, GSF National Research Center for Environment and Health, Neuherberg, Germany; 3 Department of Biomolecular Sciences and Biotechnologies, University of Milan; 4 Department of Experimental Oncology, European Institute of Oncology, Milan, Italy; and 5 Institute of Toxicology and Environmental Hygiene, Technical University Munich, Munich, Germany
Requests for reprints: Martin Göttlicher, Institute of Toxicology, GSF National Research Center for Environment and Health, Ingolstädter Landstraße 1, Neuherberg D-85764, Germany. Phone: 49-89-3187-2446; Fax: 49-89-3187-2494; E-mail: martin.goettlicher{at}gsf.de.
| Abstract |
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25% smaller than their littermates. Cell number and thickness of intestinal mucosa are reduced. Mutant embryonic fibroblasts fail to respond to insulin-like growth factor I (IGF) by the IGF-I–induced increase in cell number observed in wild-type cells. These data suggest a novel link between HDACs and IGF-I–dependent responses. Crossing of HDAC2-mutant with tumor-prone APCmin mice revealed tumor rates that are lower in HDAC2-deficient mice by 10% to 100% depending on segment of the gut and sex of the mice. These mice provide evidence that the key functions of HDAC2, although not essential for survival of the organism, play a rate-limiting role for tumor development in vivo. [Cancer Res 2007;67(19):9047–54] | Introduction |
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HDACs comprise four families of enzymes among which the Sir2-like enzymes in class 3 are structurally not related to the other classes. Mammalian class 1 enzymes HDAC1, HDAC2, HDAC3, and HDAC8 are related to yeast RPD3. Class 2 enzymes HDAC4, HDAC5, HDAC6, HDAC7, HDAC9, and HDAC10 are homologous to yeast HDA1. HDAC11 constitutes its own class (i.e., class 4) with similarities to both class 1 and class 2 enzymes (4, 5, 11, 12).
Whereas the principles of action of HDACs in control of gene expression and protein function are well documented, little is known about those physiologic processes that would depend on proper function of individual HDAC isoenzymes. There are several compounds available for research in animals or clinical trials that inhibit HDAC activities (5, 13). They have a diverse spectrum of effects in the normal body (5). However, it is not clear whether the observed effects are related to the HDAC inhibitory activities or to other nonrelated activities of the compounds. For example, the HDAC inhibitor valproic acid is used over decades as an antiepileptic drug with little side effects except for teratogenicity (i.e., neural tube closure defects) in the developing embryo. Structure-activity relationships indicate that the effects on the central nervous system are not related to the HDAC inhibitory effect whereas teratogenicity is the only obvious adverse effect that is due to inhibition of HDACs (14, 15). Because those inhibitors available at present only poorly discriminate between individual isoenzymes and apparently do not achieve complete inhibition at the used doses, most information on the role of individual HDACs could only be revealed from knockout studies. The lack of individual HDAC isoenzymes affects embryonic proliferation, heart physiology, endothele function, and bone formation, indicating that all of the HDAC isoenzymes analyzed thus far serve at least some key physiologic functions that cannot be substituted for by other isoenzymes (16–20).
The concept that aberrant function of the HDAC-dependent transcriptional repression machinery plays a role in cancer was established in acute myeloid leukemia by showing that fusion proteins of the retinoic acid receptor
encoded from chromosomal translocations aberrantly repress transcription by recruitment of corepressors and HDACs (21). Based on such findings, HDAC inhibitors were used in successful treatment of specific forms of hematopoietic malignancies (5, 22–25). Much less is known about aberrant transcriptional repression and HDACs in carcinomas although HDAC inhibition in many carcinoma cell lines induces cell cycle arrest or cell death (25). EZH2 might serve as a HDAC-dependent transcriptional (co-)repressor in prostate cancer (26), and increased expression of HDAC2 on mutation of adenomatous polyposis coli (APC) might promote colonic cancer (27). The up-regulation of HDAC2 in colonic cancer (27) and the elevated levels of HDAC2 in many cell lines derived from epithelial cancers compared with normal primary cells from the same tissues (28) are prominent examples that an individual HDAC (i.e., HDAC2) might serve a key role in the development of some forms of cancer.
The aim of this study was to test whether HDAC2 serves a rate-limiting role in intestinal tumor formation. It was equally important to assess whether there are HDAC2 functions that cannot be substituted for by other HDACs during development and physiologic function of the whole organism. Because, at present, an isoenzyme-specific inhibitor is not available, the study relied on genetic inactivation of HDAC2 in mice and crossing with tumor-prone APCmin mice.
We now show for the first time that inactivation of a class 1 HDAC is compatible with survival of mutant embryos and mice. Nevertheless, mutant mice are smaller than their wild-type littermates, and fibroblasts derived from mutant embryos respond poorly to insulin-like growth factor I (IGF). Development of intestinal tumors due to mutation of APC is reduced in HDAC2-mutant mice, indicating that a single HDAC isoform plays a key role during intestinal tumor development.
| Materials and Methods |
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Cell culture. Mouse embryonic fibroblasts (MEF) were harvested from E13.5 mouse embryos following a standard protocol.6 For quantitative analysis of apoptosis induction,
5 x 103 cells were seeded per well in 96-well plates. IGF-I or IGF-II (Sigma) was added 5 h after seeding (20 ng/mL). Medium was collected after culture and analyzed for fragmented DNA indicating apoptosis using the Cell Death Detection ELISAPLUS Kit (Roche). Cells were counted in a Neubauer chamber.
Biochemical analyses. Extracts were prepared in NET-N buffer [20 mmol/L Tris-HCl (pH 8.0), 150 mmol/L NaCl, 1 mmol/L EDTA, 0.5% Igepal, 10% glycerol] with protease inhibitors (1:200, Sigma) at 4°C by Dounce homogenization (brain) or sonication (cells). Immunoprecipitates were prepared from 700 µg of extract by incubation with 1 µg of antibody overnight at 4°C. Antibodies against HDAC1 (for Western blot and immunohistochemistry), HDAC2, HDAC3, HDAC8, mSin3B, and actin were from Santa Cruz Biotechnology; anti-HDAC2 was from Upstate Biotechnologies; and anti–ß-galactosidase was from Roche.
Recombinant expression of mutant HDAC2 proteins. Expression vectors for full-length HDAC2, HDAC2 truncated after amino acid 288, and the HDAC2 truncated-lacz fusion encoded by the mutant HDAC2 gene locus, together with HDAC1 for comparison, were constructed in pME18S including FLAG tags at the NH2 terminus. The vectors were transfected into Phoenix cells with the calcium phosphate method.
Immunoprecipitation with anti-FLAG antibodies and analysis of HDAC activity were done as previously described (30).
Histochemical analysis. Standard procedures of paraformaldehyde fixation and paraffin embedding were used. Immunohistochemistry was done with the antibodies used for Western blotting following antigen retrieval by boiling in citrate buffer and using a horseradish peroxidase/avidin-biotin complex/3,3'-diaminobenzidine system for detection.
| Results |
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5 kb with primers in exon 8 and the gene trap vector, and its sequence was read (Fig. 1A
). Comparison with the wild-type gene locus (Ensembl murine genome browser) revealed rearrangements in addition to insertion of the vector. A fragment of
3 kb from a region downstream of the last exon had been inverted and inserted after exon 8 followed by a smaller inverted fragment of the original intron between exons 8 and 9. Thereafter, the vector was integrated with
1 kb intronic sequence still present in the mutant HDAC2 gene locus. Fidelity of the sequence was confirmed by generating PCR products spanning critical fusion sites between different segments from genomic DNA of embryonic stem cells and later of mutant mice (Fig. 1A). Mutant mice were generated from this embryonic stem cell clone by injection into blastocysts from C57Bl6 mice and backcrossing for three to seven generations on the C57Bl6 background.
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Function of the HDAC2-LacZ fusion protein was characterized with respect to catalytic activity and integration into a corepressor complex with mSin3B. FLAG-tagged wild-type and mutant HDAC2 were expressed and their activities were determined in immunoprecipitates (Fig. 2A ). The same amounts of immunoprecipitated mutant proteins did not show any activity above vector control (Fig. 2A). An antibody against HDAC2 coprecipitated mSin3B from wild-type tissue or MEF extracts (Fig. 2B). Precipitation with the HDAC2 antibody is specific because no coprecipitation of mSin3B was found in extracts from HDAC2-mutant mice or MEFs. The mutant HDAC2-LacZ fusion protein cannot be recognized by the available antibodies directed against the COOH terminus of HDAC2. The HDAC2-LacZ fusion protein was therefore precipitated with an antibody directed against LacZ, and mSin3B did not coprecipitate (Fig. 2B). Efficiency of precipitation is estimated to be approximately 30% to 50% by comparing amounts of HDAC2 in precipitates and supernatants or depletion of LacZ activity from immuneprecipitation supernatants (data not shown). Coprecipitation of HDAC2 wild-type protein, but not of the mutant fusion protein, with LacZ was also found in the reverse experiment (i.e., precipitations with an antibody against mSin3B; Fig. 2C). Furthermore, in HDAC2-mutant extracts, increased amounts of HDAC1 were coprecipitated with mSin3B (Fig. 2C) whereas detectable HDAC8 levels were low in either extract. In conclusion, the HDAC2-LacZ fusion protein has lost essential functions of HDAC2 such as catalytic activity and integration into mSin3B-containing corepressor complexes.
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25% (data not shown). Histologic examination of liver, heart, brain, and thymus did not reveal obvious differences between 9-month-old wild-type and mutant animals. Alterations in hematopoiesis might have been expected based on the role of HDACs in leukemia and the effects of HDAC inhibitors on hematopoietic stem cells (34). However, cell counts from peripheral blood at 9 months of age did not show alterations in mutant mice with respect to erythrocytes, granulocytes, platelets, and lymphocytes including B-cell, T-helper, and CTL subpopulations (data not shown). Homozygously HDAC2-mutant females are subfertile due to unknown reasons. The axial skeleton of young mice revealed reduced size including smaller vertebrae and hip bones (Fig. 3C). Other malformations such as vertebral defects were not found. In addition, there was no indication for enhanced ossification of the rib cartilages as has been described for HDAC4-mutant mice. An additional consequence of HDAC2 deficiency was observed in the intestines of 1- to 4-month-old mice. Macroscopically, thickness and length of the gut were reduced in mutant mice (data not shown). Mucosa thickness was reduced by about a third both in small intestine and in the colon. Representative frames from the upper jejunum (Fig. 3D, left) and colon (Fig. 3D, right) are shown. In colon, cell numbers of crypts are reduced proportionally to crypt depth by 32% (P < 0.0003) and 29% (P < 0.003), respectively. Thus, numbers rather than cell sizes are affected. Representation of different cell types in the intestine was comparable between all genotypes. In summary, reduced body size and slightly thinner intestinal mucosa were the prominent observed phenotypes of HDAC2-mutant mice.
Primary fibroblasts were prepared from E13.5 embryos to test the hypothesis that relevant aspects that control growth in vivo might be conserved in cultured cells. Growth indicated by cell numbers was identical in cultures established from wild-type or HDAC2-mutant embryos during a 3T3 protocol over 35 passages (Fig. 4A ). In addition, sizes of cells as assessed by the forward scatter signal in flow cytometry and cell morphology did not differ (data not shown). Abundance of key regulators of cell cycle progression is similar in wild-type and HDAC2-deficient cells with only a slightly increased expression of p21Cip and cyclin E as well as a slightly decreased expression of p27Kip1 (data not shown). Because IGFs are key regulators of growth, we tested whether the responsiveness to IGFs is impaired in HDAC2-mutant MEFs. IGF-I and, to a lesser extent, IGF-II stimulated growth of wild-type MEFs as assessed by accumulation of cells in the nearly confluent state at 72 h of culture (Fig. 4B). This number of cells reflects the equilibrium between proliferation, sensitivity to contact inhibition, and cell loss by apoptosis. The IGF-I–induced increase in cell number was absent in HDAC2-mutant cultures whereas the response to IGF-II was not impaired. The differential response is plausible because the concentration of IGF-II was apparently not sufficient to fully stimulate the IGF-I receptor pathway and IGF-II signals to additional pathways (35). The difference between wild-type and mutant cells in the response to IGF-I could not be explained by differences in the rate of cell proliferation. Both wild-type and HDAC2-mutant cultures showed comparable basal and slightly IGF-inducible rates of proliferation as assessed by DNA synthesis rates per total culture in the confluent (72 h) state (data not shown). IGF-I treatment reduced the rate of apoptosis per number of cells by 40% in wild-type, but not in HDAC2-mutant, cells (Fig. 4C). The response of apoptosis rates to IGF-I could fully account for the increased number of cells in the confluent state of wild-type cells and the lack of response in HDAC2-mutant cultures. In HDAC2-mutant cells, rates of apoptosis were even increased by IGF-I, possibly to compensate the IGF-I–induced rate of proliferation in confluent cultures (Fig. 4C). These data suggest that IGF-I responsiveness and, particularly, the antiapoptotic activity of IGF-I are impaired in HDAC2-mutant MEFs.
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60% in HDAC2-deficient animals, and in the colon of HDAC2-deficient male APCmin mice, no single tumor was found at all. The median tumor number in colon both from HDAC2-deficient male and female mice was zero. These effects on tumor rates are substantially more pronounced than those on thickness of normal gut mucosa and indicate that HDAC2 is not only present at elevated levels in tumors of the gut but also plays an important role for tumor development in vivo.
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| Discussion |
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Specific phenotype of HDAC2-deficient mice. HDAC2 is the first class 1 HDAC whose mutation is compatible with survival of mice. The phenotype of reduced body size, weight, and female fertility is also apparent in homozygously mutant mice after breeding on the C57Bl6 background for seven generations. Deficiencies in other HDACs show phenotypes different from that of HDAC2-mutant mice. Lack of HDAC1 is embryonic lethal presumably due to increased expression of cell cycle inhibitors (16). The knockouts of HDAC5 and HDAC9 show phenotypes in cardiac morphology and an overshooting hypertrophic response to stress (17, 18, 36). In contrast, HDAC2-mutant mice are resistant to the induction of cardiac hypertrophy (37). HDAC7 plays a critical role for endothelial cell-cell adhesion, and therefore HDAC7-mutant embryos die by E11 due to impaired vessel integrity (20). The body size of HDAC4-deficient mice is reduced apparently similarly to that of HDAC2-mutant mice. The HDAC4 phenotype has been attributed to premature ossification during enchondral bone formation (19). The phenotype of HDAC2-mutant mice, however, has other causes because we did not observe enhanced ossification in, for example, rib cartilage.
The loss of individual HDAC isoenzymes may induce different phenotypes due to several reasons such as expression patterns of different HDACs in a certain tissue, different requirements for individual HDACs for composition of specific corepressor complexes, or different specificities of individual HDACs for partner and target proteins (38). Our data suggest that HDAC1 can substitute for HDAC2 in mSin3B complexes but not fully compensate the lack of HDAC2 functions in vivo. It is plausible that HDAC2 cannot compensate the lack of HDAC1 in the embryo around E7.5 because HDAC2 expression is low during early embryogenesis (16). It is also plausible that HDAC2-deficient embryos can survive this period of embryogenesis and develop their phenotype later in tissues where expression of HDAC1 and possibly other HDACs is too low to compensate the lack of HDAC2 functions. In support of this proposition, we could show that HDAC2 deficiency affects structures in which the abundance of other class 1 enzymes is relatively low, such as the apical parts of intestinal mucosa. Similarly, the cartilage primordia of vertebrae and skull bones in E13.5 embryos show low expression of class 1 HDACs compared with other tissues. The latter finding might explain why the phenotype of HDAC2 deficiency at that age is restricted to a subtle and apparently transient delay in skeletal growth (data not shown).
Phenotypic similarities of IGF-I–deficient and HDAC2-deficient mice. Reduced responsiveness of HDAC2-mutant MEFs to IGF-I suggests an alternative HDAC-dependent mechanism of growth control in addition to the increased expression of cell cycle inhibitors in HDAC1-mutant mice (i.e., the requirement of HDAC2 for intact IGF-I signaling). In MEFs, however, reduced responsiveness to IGF-I does not seem to depend on increased expression of inositol polyphosphate-5-phosphatase F (data not shown) that has been associated with the failure of the heart to respond to hypertrophic stimuli (37). Body size, chondrocyte proliferation, and responsiveness of gut mucosa to growth-stimulating hormones are reduced in IGF-I–deficient mice (39–41). Growth retardation is also induced by Akt/protein kinase B mutation in this pathway (42). Thus, similar phenotypes depending on mutations in HDAC2 or the IGF-I pathway support the hypothesis that the consequences of HDAC2 deficiency are mediated, at least in part, by reduced signaling through the IGF-I signaling pathway.
Role of HDAC2 in cancer development. Lack of HDAC2 has not been described in the context of human genetically inherited disease syndromes, but overexpression has been associated with the phenotype of many cancer cell lines cultured in vitro (28) and colonic cancer in vivo (27, 43). The present study provides for the first time evidence that, indeed, a single HDAC (i.e., HDAC2) plays a key role during tumor development and that deficiency with respect to this single HDAC reduces tumor formation. Importantly, those regions of the gut that are affected most prominently are also the critical sites of tumor development on mutation of APC in humans (i.e., colon and duodenum; ref. 44). The precise mechanism(s) behind the tumor-suppressing activity of HDAC2 is not known, but the antiapoptotic activity shown previously (27) could likely be part of that mechanism. The modulation of IGF-I signaling is most likely a second mechanism because IGF signaling has been shown to promote colonic cancer development by experimental and epidemiologic approaches (45, 46).
It seems possible that HDAC2 plays a particularly important role in intestinal tumor formation because it serves functions that cannot be substituted for by other HDACs. Specificity might, however, simply rely on the expression patterns of HDAC2. Thus, it is only HDAC2, and not HDAC1 and HDAC3, that is overexpressed on loss of APC tumor suppressor function in cells and mice (27). Furthermore, abundance of individual HDACs in different segments of the gut might also provide an explanation for the differences in the susceptibility to tumor development on HDAC2 deficiency. HDAC8 was found to be only poorly expressed in the mucosa of the small intestine and more abundantly in the colon. Those HDACs that were more abundantly expressed in the small intestine were found at low levels in the colon (i.e., HDAC1 and HDAC3). Thus, the patterns of other class 1 HDACs that could compensate the lack of HDAC2 functions during tumor development are different between the segments of the gut and might differ in the efficiency to promote tumor development. There is, however, no indication for direct compensation of HDAC2 deficiency by increased expression of other class 1 HDACs in HDAC2-mutant mice (data not shown).
Genetic evidence for a specific role of HDAC2 for tumor development could lead to the development of inhibitors directed specifically against this specific isoenzyme. Development of inhibitors with selective isoenzyme specificities seems to be feasible on the level of enzyme inhibition (15, 47–49) and HDAC protein degradation (50). The genetically defined model expressing a mutant protein that is inactive and does not integrate into multiprotein complexes (e.g., corepressor) corresponds closely to drug-induced degradation of HDAC2 but not fully to inhibition of the enzyme. The lack of functional protein could, in some tissues, be compensated by recruitment of other HDACs such as HDAC1 into protein complexes. Inhibition of catalytic activity within the complex, however, would not permit this mechanism of compensation. Therefore, the effect of a specific inhibitor might be more pronounced than the lack of an individual isoenzyme. Certainly, the rate-limiting role of HDAC2 for intestinal tumor development is to be expected under either condition and could even be more pronounced on chemical inhibition compared with mutation. In addition, effects on physiologic conditions and dose-limiting toxicities could be more pronounced on application of a specific inhibitor compared with the mutation. However, one could expect that the side effects of a HDAC2-specific inhibitor are more restricted than those of broad-specificity inhibitors because the lack of functional HDAC2 in contrast to other HDACs permits almost unaffected embryonic and postnatal development.
In summary, the present mutational analysis indicates that intestinal tumor development in APC mutant mice is critically affected by the lack of HDAC2 key functions, whereas in other tissues this lack is tolerated or compensated to an extent that allows only minor impairments of embryonic development or physiology of the adult at most. In addition, human colorectal carcinogenesis is, in the majority of cases, related to increased expression of HDAC2. It has to be established to which extent and in which types of individual cases tumor progression and therapy response depend on this HDAC isoenzyme. Selective inhibition of HDAC2, when appropriate inhibitors become available, could help in solving these questions and become a novel component in therapy of colorectal cancer.
| Acknowledgments |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
We thank P.G. Pelicci and K.-P. Janssen for constructive discussions and M. Berauer, A. Nuber, R. Dal Zuffo, and A. Marinelli for technical support.
| Footnotes |
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7 Available from: http://genetrap.de; search for clone ID. ![]()
Received 1/24/07. Revised 5/31/07. Accepted 7/18/07.
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L. Ellis, P. W. Atadja, and R. W. Johnstone Epigenetics in cancer: Targeting chromatin modifications Mol. Cancer Ther., June 1, 2009; 8(6): 1409 - 1420. [Abstract] [Full Text] [PDF] |
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M. Haberland, A. Johnson, M. H. Mokalled, R. L. Montgomery, and E. N. Olson Genetic dissection of histone deacetylase requirement in tumor cells PNAS, May 12, 2009; 106(19): 7751 - 7755. [Abstract] [Full Text] [PDF] |
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D. C. Marchion, E. Bicaku, J. G. Turner, M. L. Schmitt, D. R. Morelli, and P. N. Munster HDAC2 regulates chromatin plasticity and enhances DNA vulnerability Mol. Cancer Ther., April 1, 2009; 8(4): 794 - 801. [Abstract] [Full Text] [PDF] |
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