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Molecular Biology, Pathobiology, and Genetics |
1 Laboratory for Experimental Oncology, Department of General Medical Oncology, University Hospital Gasthuisberg, Leuven, Belgium; 2 Clinical Pharmacology, William Harvey Research Institute, Barts and The London School of Medicine, University of London, London, United Kingdom; 3 Human Genetics Division, University of Southampton School of Medicine, Southampton, United Kingdom; 4 Faculdade de Odontologia de São José dos Campos–Universidade Estadual Paulista, Departamento de Biociencias e Diagnostico Bucal, Brazil; 5 Department of Medicine, Vanderbilt Epidemiology Centre, Vanderbilt–Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee; and 6 Department of Epidemiology, Shanghai Cancer Institute, Shanghai, China
Requests for reprints: Shu Ye, William Harvey Research Institute, John Vane Science Building, Charthouse Square, London EC1M 6BQ, United Kingdom. Phone: 44-207-882-3425; Fax: 44-207-882-3408; E-mail: s.ye{at}qmul.ac.uk and Wei Zheng, Vanderbilt Epidemiology Centre, 2525 West End Avenue, 8th floor, Nashville, TN 37203. Phone: 615-936-0682; Fax: 615-936-8241; E-mail: wei.zheng{at}vanderbilt.edu.
| Abstract |
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1,100 breast cancer patients who had been followed for cancer recurrence and mortality for a median of 7.1 years. The T allele was associated with reduced cancer relapse and greater survival, particularly among patients with earlier stage cancer. Among patients of tumor-node-metastasis stage 0 to II, the adjusted hazard ratio of disease-free survival was 0.7 [95% confidence interval (95% CI), 0.5–0.9] for patients carrying T allele compared with those homozygous for the C allele (P = 0.02). In vitro experiments showed that the T allele had higher promoter activity than the C allele in breast cancer cells. Electrophoretic mobility shift assays showed binding of nuclear proteins to the DNA sequence at the SNP site of the T allele but not that of the C allele. The data suggest that MMP8 gene variation may influence breast cancer prognosis and support the notion that MMP8 has an inhibitory effect on cancer metastasis. [Cancer Res 2007;67(21):10214–21] | Introduction |
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A better understanding of the mechanisms underlying cancer cell spreading and the identification of factors that influence these processes could potentially help identify high-risk patients and develop novel therapeutic measures. Recent studies have shown that germ line genetic variations contribute to interindividual variability in breast cancer susceptibility and might influence the likelihood of metastasis (5, 6). Such germ line genetic variations are exemplified by BRCA1 and BRCA2 gene mutations (5, 6). However, the genes identified thus far explain only
20% of breast cancer cases, suggesting that much of the variability in breast cancer susceptibility and progression is related to variations in many unidentified genes which likely have only moderate individual effects (5, 7).
Matrix metalloproteinases (MMP) can degrade extracellular matrix constituents and have long been believed to play an important role in cancer cell spreading, which entails destruction of the extracellular matrix. Recent studies show that MMPs also have a number of other properties that can impact on tumorigenesis and metastasis. For instance, MMPs can process and activate a number of chemokines and growth factors and thereby affect cell proliferation, cell differentiation, apoptosis, and angiogenesis (8).
MMP8 (also known as neutrophil collagenase and collagenase-2) was originally thought to be produced exclusively by neutrophils, but has subsequently been found to be expressed also by a variety of other cell types (9). Expression of MMP8 in squamous cell carcinomas and in breast cancer cells has also been shown (10–13). Evidence from recent studies indicates that MMP8 has an antitumor property. For instance, it has been shown that mice lacking an active MMP8 gene have increased susceptibility to skin tumor compared with MMP8 wild-type mice (14). Moreover, studies have indicated that MMP8 expression has an effect on the metastatic behavior of breast cancer cells, such that increased MMP8 expression in breast cancer cells inhibits their ability to spread (11, 12).
A recent report indicates that in humans, single nucleotide polymorphisms (SNP) in the MMP8 gene have an influence on MMP8 expression (15). Because there is evidence of MMP8 having an inhibitory effect on the metastatic ability of breast cancer cells as mentioned above, we hypothesized that breast cancer patients of certain MMP8 genotypes are predisposed to cancer spreading. To test this hypothesis, we studied nine tagging SNPs in the MMP8 gene in a group of breast cancer patients. Four of the SNPs studied were found to be associated with lymph node involvement, the most significant association being with an SNP (rs11225395) in the promoter of the gene. This SNP was further analyzed in a large cohort of breast cancer patients who have been recruited to a population-based epidemiology study, the Shanghai Breast Cancer Study, to evaluate the association of this SNP with breast cancer relapse and survival. In vitro experiments were undertaken to examine whether this SNP has an effect on MMP8 promoter activity in breast cancer cells.
| Subjects and Methods |
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A 10-mL peripheral blood sample for DNA analysis was collected from each patient. Tumor tissues for histologic examinations were snap-frozen in liquid nitrogen within 1 h after surgery. Typing of primary tumors was done according to the WHO classification, and the Ellis and Elston system was used for histologic grading. Pathologic examination of lymph nodes (three sections per node) was done with H&E staining. Sentinel lymph nodes classified as negative were additionally stained for epithelial markers.
The Shanghai Breast Cancer Study. Included in this study are 1,455 breast cancer patients who were recruited as part of the Shanghai Breast Cancer Study, a population-based case-control study conducted among Chinese women in the Shanghai urban area (16, 17). These patients were permanent residents of Shanghai who were diagnosed with an incident breast cancer between August 1996 and March 1998 and were between the ages of 25 and 64 years. Details of the study design and study population have been described elsewhere (16). The overall response rate was 91%. A peripheral blood sample (10 mL from each woman) was obtained from 1,193 patients, 82% of the 1,455 study participants. The blood samples were processed within 6 h of collection and stored at –70°C until the relevant bioassays were conducted. Medical charts were reviewed to abstract information on cancer diagnosis, TNM stage, and cancer treatment. Pathologic slides for all cases were reviewed independently by two senior pathologists to confirm cancer diagnosis.
Patients were followed until July 2005 for cancer recurrence and mortality using a combination of two active follow-up surveys and record linkage to death certificates kept by the Vital Statistics Unit of the Shanghai Municipal Centre for Disease Control and Prevention. The median follow-up time for the cohort was 7.1 years (18). During the follow-up period, 313 deaths were identified: 283 from breast cancer, 27 from other diseases, and 3 from unclear causes. The study was approved by the institutional review boards of all participating institutes. Informed consent was obtained from each participant.
DNA Extraction from Peripheral Blood Samples
DNA extraction from the peripheral blood samples of the Leuven Breast Cancer Study was carried out using a salting-out method (19). In the Shanghai Breast Cancer Study, genomic DNA was extracted from buffy coats (WBC) using Puregene DNA Purification Kits (Gentra Systems) following the manufacturer's protocol.
SNP Selection
Tagging SNPs were selected from the HapMap database.7 As in January 2006, the database contained 35 common SNPs (minor allele frequency >0.05) at the MMP8 locus, including 3.5 kb upstream and 3.5 kb downstream of the gene. The Tagger algorithm incorporated in the HapMap Web site was used to identify a set of tagging SNPs to cover the 35 common SNPs at this locus with minimum pairwise correlation coefficients (r2) of 0.8 and was configured to include the promoter SNPs rs11225395 and rs1320632, which had been suggested to influence MMP8 expression (15) and the nonsynonymous coding SNP rs1940475. The analysis identified nine tagging SNP: rs10895353, rs7943404, rs11225395, rs1320632, rs1940475, rs1892886, rs17099436, rs2508383, and rs1276284 (Supplementary Fig. S1A).
Genotyping
The Leuven Breast Cancer Study subjects were genotyped for the nine SNPs described above using the TaqMan method. Primers and probes were designed and synthesized by Applied Biosystems (ABI Assays-by-design), with Applied Biosystems VIC (VIC) and 6-carboxy-fluorescein (FAM) labeled probes, respectively, to detect the two different alleles of each SNP. The assays were done on an ABI Prism 7900 Sequence Detector with the Allelic Discrimination Sequence Detector Software from Applied Biosystems. The Shanghai Breast Cancer Study subjects were genotyped for SNP rs11225395 using the TaqMan method with Applied Biosystems Assay-on-Demand (Assay ID C_1366493_10) primers and probes, and genotype was successfully determined for 1,100 cases. The laboratory staff was blind to the identity of the subjects. Quality control samples were included in genotyping assays. In the Leuven Breast Cancer Study, each 96-well plate contained blank (water) controls and duplicate DNA controls. In the Shanghai Breast Cancer Study, each 96-well plate contained one well of water, two wells of CEPH 1347-02 DNA, two wells of blinded quality control DNA, and two wells of unblinded quality control DNA samples, where the blinded and unblinded quality control samples were taken from the second tube of the samples included in the study, and the genotype consistency rate for the 56 study quality control samples was 95.5%. In addition, DNA of Chinese samples that were used in HapMap (n = 45) and Perlegen (n = 24) were purchased from Coriell Cell Repositories8 and genotyped for this SNP. The consistence rate of this SNP was 95.2% compared with the data from HapMap7 and Perlegen.9
Construction of MMP8 Promoter-Luciferase Reporter Gene Plasmids
For each of the two alleles of the rs11225395 SNP, which arises from a C to T substitution at position –799 bp (relative to the transcriptional start site) in the MMP8 gene promoter, a 968-bp DNA fragment from position –872 to +96 bp was generated by PCR in which DNA from an individual homozygous for that allele was used as template. Each of the two amplicons was first cloned into the pCR-Blunt II-TOPO vector (Invitrogen) and then subcloned into the pGL3-basic vector (Promega) with the MMP8 gene promoter being placed upstream of the firefly luciferase reporter gene. All constructs were sequenced to verify that the cloned MMP8 gene promoter was in the desired orientation and free from misincorporation of nucleotide during the PCR.
Cell Culture
The MDA-MB-231 breast cancer cell line was purchased from the European Collection of Animal Cell Cultures (ECACC) and cultivated following instructions provided by ECACC. In brief, the cells were cultured in Leibovitz's L15 medium supplemented with 2 mmol/L L-glutamine, 1.0 mmol/L sodium pyruvate, 0.1 mmol/L nonessential amino acids, 10% heat-inactivated fetal bovine serum, 100 µg/mL streptomycin, and 100 units/mL penicillin. The cells were incubated at 37°C with 100% air.
Transient Transfection and Luciferase Reporter Assay
MDA-MB-231 breast cancer cells were transfected with the reporter gene constructs described above. Transfection was done with the use of Effectene (Qiagen) in duplicate for each of the constructs. The pRL-TK (Promega) plasmid, which contains a Renilla luciferase gene, was co-transfected into the cells to serve as a reference for transfection efficiency. The cells were then lysed, and the activities of firefly luciferase and Renilla luciferase were measured using a dual-luciferase assay kit (Promega). MMP8 promoter activity was measured as a ratio of firefly luciferase activity to Renilla luciferase activity, and the means (and SEs) from three independent experiments are presented.
Electrophoretic Mobility Shift Assay
Biotin-labeled, double-stranded oligonucleotide probes (C: 5'-CCATGCAGAGCCTATAGTAGCTCC-3' and T: 5'-CCATGCAGAGCTTATAGTAGCTCC-3') corresponding to the sequence from nucleotide position –810 to –787 in the MMP8 gene promoter, with either a C or T at the rs11225395 SNP site (position –799), were synthesized. The probes were incubated with nuclear protein extracts from MDA-MB-231 breast cancer cells, in the presence or absence of competitors, i.e., unlabeled probe C (referred to as competitor C), unlabeled probe T (referred to as competitor T), or a nonspecific sequence (referred to as nonspecific competitor). Protein-DNA complexes were resolved by PAGE and detected using a LightShift Chemiluminescent EMSA kit (Pierce Biotechnology). Three independent experiments were carried out.
Statistical Analyses
Allele and genotype frequencies were calculated by the gene counting method.
2 analyses were done to test genotypic and allelic association with clinical and pathologic parameters. SNP pair-wise linkage disequilibrium coefficient, haplotype frequencies, and haplotypic effects on lymph node metastasis were determined by using the THESIAS program, which implements a stochastic EM (Expectation-Maximization) algorithm (20). Cancer recurrence/metastasis and death due to breast cancer were the study outcomes for the analysis of disease-free survival, and death from any cause was the study outcome for the analysis of overall survival. Survival time was calculated as the time from cancer diagnosis until death (for overall survival) or the occurrence of study outcomes (cancer recurrence/metastasis and death due to breast cancer). Observations were censored at the date of last contact or noncancer death (for disease-free survival). The Kaplan-Meier method was used to estimate the survival rate, and differences in survival across genotype groups were examined using the log-rank test. The Cox proportional hazard model was employed to compute hazard ratios (HR). All statistical analyses were done using SAS version 9.1 (SAS Institute), and all P's were for two-sided tests.
| Results |
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2 cm) in 68 patients and large (>2 cm) in 72 patients. The tumors from 14 patients were well differentiated, the tumors from 52 patients were moderately differentiated, and the tumors from 72 patients were poorly differentiated. Of the 140 patients, 61 had no lymph node involvement, and 79 were lymph node positive. Using the American Joint Committee on Cancer TNM staging system, 39 patients were classified as stage I, 74 were classified as stage II, and the remaining 27 were classified as stage III. The patients were genotyped for a panel of nine SNPs in the MMP8 gene (Supplementary Fig. S1A, SNP selection is described in Materials and Methods). No association was detected between the SNPs and tumor size, histologic grade, or tumor subtype. However, there was an association between lymph node metastasis with four SNPs studied, i.e., rs11225395, rs1940475, rs1892886, and rs1276284, with the minor alleles (T allele of SNP rs11225395, G allele of SNP rs1940475, A allele of SNP rs1892886, and A allele of SNP rs1276284) having lower frequencies in patients with lymph node metastasis than in patients without lymph node involvement (P = 0.02, P = 0.03, P = 0.03, and P = 0.03, respectively, Table 1 ).
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| Discussion |
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Lymph nodes are often the first sites to which breast cancer cells spread (4). Studies have shown that lymph node involvement at primary diagnosis of breast cancer patients predicts an unfavorable outcome after first recurrence, independent of the site of relapse and disease-free interval (21). This suggests that primary lymph node involvement is an indicator of breast cancers that have an aggressive metastastic behavior, rather than merely a time-dependent phenomenon (21). In this study, we found an association between lymph node metastasis and MMP8 SNPs, especially SNP rs11225395. Furthermore, we observed that the minor allele of this functional SNP was associated with reduced cancer relapse and improved survival after breast cancer diagnosis in an independent study conducted in Chinese women.
The association of the T allele of the rs11225395 SNP with better prognosis of breast cancer in the Chinese women was more apparent in those with an early-stage cancer (TNM stage 0–II) where spread of cancer cells was restricted to lymph nodes and there was no involvement of other tissues or organs. This may indicate that MMP8 has a greater protective effect against lymph node metastasis, as compared with distant metastasis to other organs. In agreement, animal studies showed that reducing MMP8 levels by the ribozyme knockdown technique dramatically increased lymph node metastasis of breast cancer cells orthotopically implanted in mice, but has a smaller effect on metastasis to the lung; thus, it was thought that a reduction in MMP8 level predisposes breast cancer cells to travel, survive, and grow better in the lymphatic system than by the hematogenous route to other organs (11).
The functional analyses of the rs11225395 SNP indicates that it has an effect on MMP8 promoter activity in breast cancer cells, with the T allele having a greater strength in driving gene expression. The electrophoretic mobility shift assays reveal that the T allele, but not the C allele, interacts with nuclear protein(s) from breast cancer cells, with three DNA-protein complexes detected, which may have derived from different nuclear proteins or different fractions of the same protein. Because the T allele has higher promoter activity than the C allele, it is possible that the nuclear protein(s) selectively binding to the T allele is a transcriptional enhancer and accounts for the higher promoter activity of the T allele. An in silico scan of the DNA sequence at the rs11225395 SNP site did not reveal a good match with consensus cis-elements catalogued in transcription factor binding site databases. Because not all transcription factors and their binding sites have been identified to date and, thus, the current databases do not have a complete coverage, it is possible that the nuclear protein(s) binding to the T allele is a transcription factor not contained in the databases.
In the Shanghai study, we focused on the rs11225395 SNP, because among the nine SNPs examined in the Leuven study, the rs11225395 SNP was the most significantly associated with lymph node metastasis, and because it tagged the four major MMP8 haplotypes, i.e., the T allele tagged Hap 2 and Hap 4, which were associated with reduced metastasis, whereas the C allele tagged Hap 1 and Hap 3, which had higher metastasis risk, in the Leuven study. In addition, this SNP was in linkage disequilibrium with the other three SNPs (i.e., rs1940475, rs1892886, and rs1276284) that were associated with metastasis in the Leuven study and had previously been suggested to have an effect on MMP8 expression (15).
The minor alleles of SNPs rs11225395, rs1940475, rs1892886, and rs1276284 were associated with lower risk of lymph node involvement. It is possible that some of these SNPs are only genetic markers that mark the effects of certain functional SNPs through linkage disequilibrium. The functional analysis of SNP rs11225395 indicates that it has an effect on MMP8 promoter activity, which is consistent with our results of the association between the T allele with reduced risk of lymph node metastasis and cancer relapse and improved survival. It remains unknown whether SNPs rs1940475, rs1892886, and rs1276284 also have direct functional effects. The rs1940475 SNP results in a glutamate to lysine substitution at amino acid residue 87 located in the propeptide of MMP8 and might potentially affect pro-MMP8 activation. The rs1892886 SNP is located in intron 4, and the rs1276284 SNP is in the 3' flanking region of the MMP8 gene. The locations of these two latter SNPs suggest that they are less likely to be functional, although this cannot be precluded. In addition, it is possible that these SNPs (rs11225395, rs1940475, rs1892886, and rs1276284) might mark the effect of other SNPs that were not examined in this study.
SNPs in several other MMP genes have been associated with susceptibility and/or spreading of cancers, the most extensively studied being the MMP1 –1607 1G>2G polymorphism. The 2G allele of this polymorphism has higher MMP1 expression levels than the 1G allele (22, 23) and has been reported to be associated with increased susceptibility and/or metastasis of melanoma, breast cancer, ovarian cancer, lung cancer, and colorectal cancer (22–31). The present study suggests that SNPs in the MMP8 gene are also associated with breast cancer metastasis, and that in contrast to the 2G allele of the MMP1 –1607 1G>2G polymorphism, the high-expression T allele of the MMP8 –799C>T SNP (rs11225395) is associated with lower susceptibility to metastasis and better survival in breast cancer patients. It would be interesting to investigate whether MMP8 variation is also related to susceptibility and/or metastasis of other cancers.
A limitation of this study is the relatively small sample size in the Leuven study. However, the promising association between SNP rs11225395 with breast cancer metastasis was replicated in an independent study with a larger sample size. The strong study methodology in the Shanghai study, including a population-based design, high response rate, and high follow-up rate, lends credibility to the results reported in this paper. A potential concern for the Shanghai study, however, is that the information regarding cancer relapse and cause of death was collected based on self-report or death certificate, which might have compromised the accuracy of these outcome data. Potential errors in outcome assessment, however, are likely to be random, which tend to attenuate the association observed. Although the results from our study need to be replicated in other studies, our data suggest that genetic variation in the MMP8 gene can influence breast cancer prognosis and support the notion that MMP8 has an inhibitory effect on breast cancer metastasis.
| Acknowledgments |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
| Footnotes |
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J. Decock, J-R. Long, and R.C. Laxton contributed equally to this work.
Received 5/ 8/07. Revised 8/31/07. Accepted 9/ 7/07.
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