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Molecular Biology, Pathobiology, and Genetics |
1 Laboratory of Molecular Oncology, Institute for Nutritional Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Graduate School of the Chinese Academy of Sciences, Shanghai, China; 2 College of Public Health, Zhengzhou University, Zhengzhou, China; 3 Department of Hematology and Oncology, Cedars-Sinai Medical Center, University of California at Los Angeles School of Medicine, Los Angeles, California; and 4 College of Life Sciences, Peking University, Beijing, China
Requests for reprints: Dong Xie, Laboratory of Molecular Oncology, Institute for Nutritional Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 294 Tai-Yuan Road, Shanghai 200031, China. Phone: 86-21-5492-0918; Fax: 86-21-5492-0291; E-mail: dxie{at}sibs.ac.cn.
| Abstract |
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| Introduction |
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The IRF family is a group of transcription factors, and nine IRF members (IRF-1 to IRF-9) are present in man (5). These IRF molecules play pivotal roles in antiviral defense, immune response/modulation, and cell growth regulation by stimulating expression of IFN-
/IFN-ß, IFN-stimulated genes, as well as induction of expression of cytokines and chemokines (6, 7). IRF-1 is the first identified member of the IRF family; it can be effectively induced in most cell types after exposure to IFN-
(6, 7). When translocated into the nucleus, IRF-1 binds to promoter regions of many IFN-
inducible genes and activates their transcription leading to inhibition of cell proliferation and stimulation of cell apoptosis (8, 9). IRF-2 is also induced by IFN-
and acts as an antagonist to IRF-1. IRF-2 can bind to the same DNA sequences as IRF-1 but down-regulates or blocks the transcription of IRF-1 target genes (10). IRF-2 is generally synthesized after IRF-1 upon cellular exposure to IFN-
. Also, IRF-2 has a greater protein stability (8-h half-life) compared with IRF-1 (30-min half-life; refs. 10, 11). IRF-2, therefore, plays a role in the feedback inhibition to the effects of IFN-
mediated by IRF-1 (8, 9). Furthermore, evidence is accumulating to suggest that IRF-1 and IRF-2 have antioncogenic and oncogenic potentials, respectively (810). Overexpression of IRF-2 in NIH3T3 cells promotes their transformation and tumorigenicity in nude mice (10). In contrast, forced expression of IRF-1 can reverse the IRF-2mediated transformed phenotype (10). IRF-1 overexpression in fibrosarcoma cells (MCA101) can also suppress their malignant phenotype in syngeneic mice (12). Similarly, embryonic fibroblasts from IRF-1 knockout mice, but not wild-type mice, were transformed by forced expression of mutant c-Ha-ras oncogene (13). The loss of IRF-1 expression and gain of IRF-2 expression in human melanoma and breast cancer cells have been associated with their more malignant phenotype (14, 15). In addition, incremental loss of IRF-1 expression paralleled the advancement of hepatic and endometrial cancers (16, 17). Accordingly, the expression patterns of IRF-1 and IRF-2 in clinical cancer specimens support IRF-1 as a tumor suppressor and IRF-2 as an oncoprotein.
It has been reported that transfection of IRF-1 in esophageal adenocarcinoma cell lines can induce their apoptosis (18), but the expression pattern and function of IRF-1 and IRF-2 in ESCCs are poorly understood. In addition, the significance of the two molecules in clinical diagnosis and prognosis for ESCCs has not been investigated thus far. In the present experiments, therefore, we determined the expression pattern of IRF-1 and IRF-2 in ESCC samples as well as matched normal tissues and correlated these finding with clinical features of ESCCs. Moreover, we explored the function of IRF-1 and IRF-2 in ESCC cell lines, confirming, for the first time, that the ratio of expression of these two proteins is important for development and progression of ESCCs.
| Materials and Methods |
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Real-time PCR analysis. Total RNA was isolated from patient tissues and ESCC cell line using TRIzol reagent (Invitrogen, Carlsbad, CA) according to the standard protocol. Two micrograms of high-quality RNAs were processed directly to cDNA by reverse transcription with Superscript II (Invitrogen) following the manufacturer's instruction in a total volume of 50 µL. Primers for the genes tested in the present experiments were designed using software PRIMER35 (Supplementary Table S2). Amplification reactions were done in 20 µL of the LightCycler-DNA Master SYBR Green I mix (Roche Applied Science, Penzberg, Germany) with 10 pmol primer, 2 mmol/L MgCl2, 200 µmol/L deoxynucleotide triphosphate mixture, 0.5 units Taq DNA polymerase, and universal buffer. All of the reactions were done in triplicate in an iCycler iQ system (Bio-Rad, Hercules, CA), and the thermal cycling conditions were as follows: 95°C for 3 min; 40 cycles of 95°C for 30 s, 58°C for 20 s, and 72°C for 30 s; 72°C for 10 min.
The relative mRNA levels of target genes to that of ß-actin in either clinical samples or cultured cells were calculated according to the methods described by Xie et al. (21) with some modifications. In brief, reactions were characterized at the point during cycling when amplification of the PCR product was first detected after a fixed number of cycles, which is defined as Ct. The target message in unknown samples was quantified by measuring the Ct value, and the Ct value of ß-actin was also measured as the endogenous RNA control. The levels of target genes in each sample were normalized on the basis of its ß-actin content through the formula: Leveltarget/Levelß-actin = 2(Ctß-actin Cttarget). Spearman's rank correlation coefficient was used to evaluate the relationships between the mRNA expression of either IRF-1 or IRF-2 with clinicopathologic features of ESCC samples. Paired t test was adopted to study the expressions of target genes in ESCC cell line. The statistical results were considered significant at P < 0.05 and highly significant at P < 0.01. All data analyses were done using the program SPSS for Windows.
Immunohistochemistry and scoring system. For immunohistochemistry, ESCCs and matched normal esophageal tissues were frozen in a cryostat chamber and 10 µm sections were collected on glass slides. The sections were fixed in ice-cold acetone for 30 min, washed in 0.01 mol/L PBS (8 mmol/L Na2HPO4, 2 mmol/L NaH2PO4, and 150 mmol/L NaCl) for 3 x 5 min, blocked for 1 h in 0.01 mol/L PBS supplemented with 0.3% Triton X-100 and 5% normal goat serum, and then incubated with either IRF-1 (1:500) or IRF-2 (1:500) at 4°C overnight. After brief washes in 0.01mol/L PBS, sections were incubated for 2 h in 0.01 mol/L PBS with horseradish peroxidaseconjugated goat anti-rabbit IgG (1:1,000), followed by development with 0.003% H2O2 and 0.03% 3,3'-diaminobenzidine in 0.05 mol/L Tris-HCl (pH 7.6). Immunohistochemistry for each sample was done at least thrice, and all sections were counterstained with hematoxylin. Negative controls consisted of substitution of the primary antibody with normal rabbit serum at the same dilution (Supplementary Fig. S1).
The immunohistochemical evaluation for intratumor expression of IRF-1 was carried out independently by three pathologists blinded to the patient's clinical information, and a scoring system was developed as follows. The cells bearing obvious brown signals of either IRF-1 or IRF-2 compared with negative controls were considered positive. The intensity of staining was rated as either 0 (no signal as the negative controls), 1 (weak), or 2 (strong); the percentage of positive tumor cells was graded as 0 (no cells), 1 (125% of total tumor cells), 2 (2650%), 3 (5175%), and 4 (75100%). The immunoreactive score for whole slides was calculated by multiplying the score of percentage positive cells and the score of staining intensity. As a result, seven grades were scored as 0, 1, 2, 3, 4, 6, and 8. The tumors with scores
2 were referred as positive, and those with scores <2 were negative. Relationships between intratumor expression of either IRF-1 or IRF-2 protein with clinicopathologic features were explored by Spearman's rank correlation coefficient and done using the program SPSS for Windows.
Construction and transfection of plasmids. Full length cDNA of either IRF-1 or IRF-2 was subcloned from vectors of pCMVIRF-1 and pCMVIRF-2, respectively, which were kindly provided by Dr. W.A. Chow (22), and the products of IRF-1 or IRF-2 were inserted into pcDNA3.1 vectors at appropriate sites (Invitrogen). The IRF-1pcDNA3.1, IRF-2pcDNA3.1, and empty pcDNA3.1 plasmids were then transfected into EC109 using LipofectAMINE 2000 reagent (Invitrogen). The transfected cells were selected in the presence of G418 (Invitrogen) (600 µg/mL), and resistant clones were further confirmed by Western blotting (see supplemental Materials and Methods).
RNA interference of IRF-2. Target sequence for IRF-2small interfering RNA was GGACCAACAAGGGCAGTGG, and the disturbed nucleotide sequence of IRF-2small interfering RNA was GAATGCGAGCGAGCGAGCA as a negative control. FG12 lentiviral vector was used to produce small double-stranded RNA (small interfering RNA) to inhibit target gene expression in ESCC cells. And the information and usage on this vector system has been previously described in detail by Qin et al. (23).
Tumorigenicity assay in vivo. Female nude mice were housed under standard conditions. The animal protocols were done in agreement with SIBS Guide for the Care and Use of Laboratory Animals and approved by Animal Care and Use Committee, Shanghai Institutes for Biological Sciences. Six-week-old female nude mice were s.c. injected at two sites in the flanks with 1 x 105 ESCC cells per flank. The resulting tumors were measured with calipers every 4 days, and tumor volume (cm3) was calculated using the standard formula: length x width x height x 0.5236 (24). Four weeks after injection, tumors were harvested from ether-anesthetized mice. Data were presented as tumor volume (mean ± SD). Statistical analysis was done using the Student's t test by the program SPSS for Windows.
The information about antibodies/reagents and the methods of some other experiments were compiled in the supplemental "Materials and Methods".
| Results |
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Relationships between mRNA expression of either IRF-1 or IRF-2 and ESCC clinicopathologic features. Because our results showed that the down-regulation of IRF-1 mRNA and the up-regulation of IRF-2 mRNA were frequently detected in the ESCC samples, the correlations between either IRF-1 mRNA down-regulation or IRF-2 mRNA up-regulation and ESCC clinicopathologic features were estimated using Spearman's rank correlation coefficient. Statistical analysis revealed that the up-regulation of IRF-2 mRNA in ESCCs compared with matched normal esophageal tissues was positively correlated with tumor stage (P = 0.001), depth of tumor infiltration (P = 0.006), lymph node metastasis (P = 0.015), and tumor size (P = 0.011; Table 1 ), disclosing a close correlation between IRF-2 mRNA up-regulation and ESCC progression. However, no correlations existed between IRF-2 mRNA up-regulation and tumor differentiation, lymph node metastasis number, patient age, or gender. Although real-time PCR results showed that IRF-1 mRNA down-regulation was frequently observed in ESCCs compared with matched normal esophageal tissues, no statistical relationships were noted between IRF-1 mRNA down-regulation with the clinicopathologic features except lymph node metastasis number (P = 0.017; Table 1), which implied that low level of IRF-1 might favor metastasis of ESCC to lymph nodes.
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6% spontaneous apoptosis, whereas IRF-2overexpressed clone had decreased apoptosis (
3% for 109/2L and 2% for 109/2H) compared with 109/WT. In contrast, the 109/1H clone had increased spontaneous apoptosis of EC109 (
22%), but 109/1L cells showed a similar rate of apoptosis (
6%) as 109/WT (Supplementary Fig. S3B). Moreover, 109/2H and 109/2L formed more numerous and bigger colonies than 109/WT in soft agar (Supplementary Figs. S3C and S2D). In comparison, clonogenic capacity of 109/1H cells was nearly lost, but the number and size of 109/1L colonies were similar to that of 109/WT (Supplementary Fig. S3C and D). Taken together, forced expression of IRF-2 effectively enhanced the in vitro growth of ESCC cells, which was consistent with our statistical analysis of the clinical samples showing that IRF-2 was positively correlated with ESCC progression. Regulation of proliferation- and apoptosis-related molecules by IRF-1 and IRF-2 in ESCC cells. Because overexpression of either IRF-1 or IRF-2 prominently affected the proliferation and spontaneous apoptosis of ESCC cells, several proliferation and apoptosis-related molecules were examined in these cells. Up-regulation of cyclin-D1 mRNA and protein was observed in 109/2L and 109/2H compared with 109/WT, and the levels paralleled those of IRF-2. Also, phosphorylated Rb increased in 109/2L and 109/2H cells compared with 109/WT (Fig. 2A). In contrast, expression of cyclin-D1 (both mRNA and protein) and phosphorylated Rb decreased compared with those in 109/WT (Fig. 2A). Notably, mRNA and protein levels of total Rb did not vary among these clones (Fig. 2B). Overexpression of IRF-2 and IRF-1 also altered the levels of several apoptosis-related molecules. Both Bcl-2 mRNA and protein increased proportional to IRF-2 levels of 109/2L and 109/2H compared with 109/WT (Fig. 2), and the cleavage of caspase-9 (measured as expression of the cleavage product p35) was attenuated in 109/2L and eliminated in 109/2H (Fig. 2A). In contradistinction, Bcl-2 mRNA and protein levels decreased and cleaved caspase-9 increased in 109/1H (Fig. 2). Similar to the findings regarding Rb levels, the expression of caspase-9 mRNA was not altered among all cell clones (Fig. 2B). Furthermore, no variations of cyclin-D1, Rb, Bcl-2, and caspase-9 were observed in 109/1L cells (Fig. 2). Several other proliferation- and apoptosis-related proteins (e.g., p53, p27KIP1, cyclin-A1, and Bcl-XL) were also examined, and their levels did not change with forced expression of either IRF-1 or IRF-2 (data not shown).
Cellular localization and activity of IRF-1 and IRF-2 in ESCC cells in vitro. Immunocytochemistry showed that IRF-2 was widely distributed in the cytoplasm and nucleus of 109/WT, 109/V, 109/2L and 109/2H, although little IRF-1 expression was detected (Fig. 3A ). Interestingly, although IRF-1 in 109/1L was obviously increased in comparison with 109/WT, it was mainly localized in the cytoplasm and IRF-2 remained in both the nucleus and cytoplasm (Fig. 3A). In 109/1H, IRF-1 was detected throughout the cells, including the cytoplasm and nucleus, but IRF-2 was mainly found in the cytoplasm (Fig. 3A). Because translocation into the nucleus is a prerequisite for either IRF-1 or IRF-2 to function (8, 9), these results, combined with the growth and Western blot studies, suggested that IRF-2 was functional in all cell clones except for 109/1H, whereas IRF-1 was functional in 109/1H but nonfunctional in 109/1L cells.
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Effect of forced expression of either IRF-1 or IRF-2 on tumorigenicity of ESCC cells in nude mice. Our in vitro studies indicated that functional overexpression of either IRF-2 or IRF-1 made ESCC cells phenotypically more or less malignant, respectively. Therefore, we also evaluated the effect of overexpression of either IRF-1 or IRF-2 on tumorigenicity of ESCC cells in nude mice. Each animal was injected at two sites in the flanks with the left for 109/1H or 109/2H and the right for 109/V (Fig. 4A and B ), and the tumor growth was measured every 4 days. The 109/1H cells formed much smaller tumors compared with 109/V (P = 0.004; Fig. 4A and C), whereas 109/2H cells developed larger tumors than control 109/V cells (P = 0.02; Fig. 4B and C).
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, IFN-
, or tumor necrosis factor (TNF)-
and measured their proliferation responses to each cytokine. IFN-
, IFN-
, and TNF-
markedly inhibited the proliferation of IRF-1expressing ESCC cells. Both IFN-
and TNF-
moderately inhibited growth of 109/WT and 109/V, whereas IFN-
modestly inhibited proliferation of these cells. In contrast, 109/2L and 109/2H were resistant to the growth inhibitory activity of IFN-
, IFN-
, and TNF-
(Supplementary Fig. S5). These results suggested that the initial levels of IRF-1 and IRF-2 were pivotal to determine if they would be resistant against these antitumor cytokines. | Discussion |
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IRF-2 has been shown to promote cell proliferation; and one of the most important mechanisms mediating its effect is the direct stimulation of transcription of histone H4 (9). Histone H4 is a phylogenetically conserved cell cycle regulatory element and increases at the G1-S phase transition to promote DNA replication (30, 31). We found up-regulation of levels of histone H4 mRNA after IRF-2 overexpression in the ESCC cell line, consistent with IRF-2 stimulating proliferation of ESCC cells.
Also in our experiments, IRF-2 stimulated expression of cyclin-D1 and phosphorylated Rb. As a tumor suppressor, unphosphorylated Rb prevents transcription of critical cell proliferationrelated genes (32, 33). Cyclin-D1 stimulates cell growth by inducing Rb phosphorylation that leads to inactivation of Rb and acceleration of the cell cycle (34). IRF-2 was also found in our studies to induce the up-regulation of Bcl-2 and the down-regulation of activated caspase-9. Bcl-2 is an important antiapoptotic protein belonging to the Bcl-2 family of proteins (35, 36) and is able to impede activation of caspase-9, one of the initial event for caspase-mediated apoptosis (37, 38). Therefore, cyclin-D1 and Bcl-2 might be involved in the progrowth and antiapoptosis effects of IRF-2 on ESCC cells.
Additionally, cyclin-D1 or Bcl-2 have been shown to be highly expressed in esophageal cancers (3941); and thus, IRF-2 might be an upstream stimulator of these proteins in situ. In contrast, forced expression of IRF-1 led to a decrease of cyclin-D1, Bcl-2, and phosphorylated Rb and to an increase of activated caspase-9, associated with decreased cell proliferation and increased apoptosis. Before our study, investigations had not directly linked the effect of either IRF-1 or IRF-2 on expression of either cyclin-D1 or Bcl-2. Investigations have shown that the levels of cyclin-D1 (42, 43) and Bcl-2 (44, 45) are regulated by exposure of cells to IFN-
. Because the IFN-
induced pathway is largely mediated by IRF-1 and IRF-2, stimulation of cyclin-D1 and Bcl-2 may reflect control by IRF-1 and IRF-2.
In addition, forced expression of IRF-1 induced the expression of p21WAF1/CIP1, which has been proved to be an executor for inhibition of proliferation of various cells by IRF-1 (9, 46). P21WAF1/CIP1, a cyclin-dependent kinase inhibitor, interacts with the complexes of cyclin/cyclin-dependent kinase and interrupts their activities, causing cell-cycle arrest in the G1 and/or G2 phase (47, 48). Absence of p21WAF1/CIP1 generally leads to enhanced cell growth and is observed in many types of cancers, including ESCCs (47, 48). Accordingly, the loss of IRF-1 might be a cause of down-regulation of p21WAF1/CIP1 in ESCCs.
Immunohistochemistry showed that, in ESCCs, IRF-2 was present in the nucleus and in the cytoplasm, although any detectable IRF-1 was localized mainly in the cytoplasm. Because IRF-1 and IRF-2 are both transcription factors, they must translocate into the nucleus for activity (8, 9). Consistently, our in vitro experiments showed that when IRF-1 was mainly in the cytoplasm and IRF-2 was intense in the nucleus, transcription of histone H4 was up-regulated but levels of p21WAF1/CIP1 were not affected, resulting in the stimulation of cell growth. In contrast, when IRF-1 entered the nucleus, accompanied by exclusion of IRF-2 from the nucleus, p21WAF1/CIP1 expression was markedly induced and cell growth was inhibited. Hence, nuclear localization of either IRF-1 or IRF-2 was well correlated with their functional activation. In addition, silencing IRF-2 by small interfering RNA resulted in nuclear translocation and activation of IRF-1. Taken together, the ratio of IRF-1 to IRF-2 might be the decisive factor determining which of these proteins enters the nucleus and influences the behavior of ESCC cells. Studies have shown that the ratio of IRF-1/IRF-2 oscillates during the cell cycle, attaining its highest level in the growth-arrested cells and its lowest level after growth stimulation; the fluctuation of the ratio of these two proteins assures precise control of growth of normal cells (49). In ESCC cells, however, the high levels of IRF-2 probably disrupted the balance between IRF-1 and IRF-2, leading to the dysregulation of cell growth and enhancing the development and progression of ESCCs.
Although ESCC cells are often immunogenic, they are poorly recognized and eliminated by the immune system. Several mechanisms underlying immune privilege of tumor cells have been presented, one of which is that ESCC cells are resistant to antitumor cytokines secreted by activated lymphocytes (28, 29). Our results suggested that overexpression of IRF-1 and IRF-2 respectively enhanced and protected ESCC cells from growth suppression mediated by these cytokines. As a result, up-regulation of IRF-2 might promote the immune privilege of ESCC cells during development and progression of the cancer.
In summary, our results in vitro showed that IRF-2 acted as an important oncoprotein in ESCCs, and its elevated expression was correlated with tumorigenicity of ESCC cells in vivo and in vitro and with clinicopathologic features of ESCC samples. In contrast, forced expression of IRF-1 inhibited growth of ESCC cells, indicating it was a potential tumor suppressor of the esophagus. Previous research has described the LOH of the IRF-1 gene in ESCCs, resulting in loss of expression of IRF-1. Our studies suggested that high expression of IRF-2 could also result in loss of function of IRF-1 in ESCCs. Therefore, loss of expression or loss of function of IRF-1 as a result of IRF-2 elevation might play a pivotal role in the development and progression of ESCCs, and measurement of both proteins might be useful indicators in the clinical diagnosis of ESCCs. Our work also hinted that increasing IRF-1 and/or decreasing IRF-2 levels could be a therapeutic approach for ESCCs. Altogether, our results give insights into the function of IRF-1 and IRF-2 in the development and progression of ESCCs and provide novel targets for therapy of this malignancy.
| Acknowledgments |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
We thank Dr. W.A. Chow (Department of Medical Oncology, City of Hope National Medical Center, Duarte, CA) for providing expression plasmids of IRF-1 and IRF-2.
| Footnotes |
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Received 9/25/06. Revised 11/ 9/06. Accepted 12/18/06.
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