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Cell, Tumor, and Stem Cell Biology |
1 Molecular Imaging Program at Stanford, Departments of Radiology and Bioengineering, Bio-X Program, School of Medicine, Stanford University, Stanford, California and 2 Howard Hughes Medical Institute and Department of Pharmacology, University of California, San Diego, California
Requests for reprints: Sanjiv Sam Gambhir, Molecular Imaging Program at Stanford, Departments of Radiology and Bioengineering, Bio-X Program, Stanford University James H. Clark Center, 1st Floor, 150 East Wing, 318 Campus Drive, Stanford, CA 94305-5427. Phone: 650-725-2309; Fax: 650-897-9988; E-mail: sgambhir{at}stanford.edu.
| Abstract |
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| Introduction |
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500 cells) for small animals from superficial depths (13 mm; ref. 6). Fusion proteins encoded by fusion genes composed of a bioluminescent, a fluorescent, and a PET reporter gene are thus ideal for bridging imaging gene expression from a single cell to living animal with sensitivity and from greater depths. We have reported previously the construction and validation of several multimodality bifusion and triple fusion reporter genes in living subjects using fluorescence microscopy, a cooled charge-coupled device (CCD) camera, and microPET (7, 8). Others have also reported on fusion reporters (35, 9). These triple fusion reporters can preserve relatively high thymidine kinase (TK) activity but moderate luciferase and fluorescence activities and are therefore less sensitive for in vivo studies specially where detection of signal from the fewest possible cells are required. fl (note that fl refers to the gene and FL to the enzyme; i.e., protein) is one of the most widely used reporter genes in modern molecular biology and in molecular imaging. This well-characterized 62-kDa luciferase enzyme [isolated from North American firefly (Photinus pyralis)] emits light in the yellow-green region through oxidation of D-luciferin (10, 11). The wild-type (WT) fl is thermolabile with an in vitro half-life of 2 to 3 min at 37°C and in vivo half-life of 1 to 4 h (12). Although thermolability is advantageous for time-sensitive studies, such as induction or repression of gene expression, drug response etc., a more thermostable enzyme results in accumulation of more enzyme over time, thus producing much higher light output. Tisi et al. (13) thus constructed a thermostable fl (tfl bearing the mutations E354K, I232A, T214A, and F295L), which has an in vitro half-life of 15 min. However, the COOH-terminal end of the tfl contains a peroxisome targeting sequence [serine-lysine-leucine (SKL)] that directs the enzyme to the peroxisome (14). Localization of the luciferase to the peroxisomes could interfere with luciferase expression and normal cellular physiology in various ways. First, availability of ATP, O2, and luciferin and the stability of FL within peroxisomes have not been investigated in detail, which could affect the in vivo imaging measurements. Second, large amounts of a foreign protein in the peroxisomes could impair the normal function and interfere with the import of other peroxisomal targeting proteins.
In the current study, we first constructed a mutant (mtfl) of tfl by replacing the SKL sequence with the isoleucine-valine-lysine (IAV) sequence to achieve better cytoplasmic distribution and better access to its substrate D-luciferin (15). Comparison between fl, tfl, and mtfl gene expression level in cell culture and living animal showed that mtfl possesses the highest expression among all the three luciferases. At the purified protein level, mTFL could preserve a 10- to 15-fold higher activity than TFL at 37°C. To improve the sensitivity of our existing triple fusion vector (fl-mrfp1-ttk), we replaced the fl with mtfl and validated the vector both in cell culture and in living mice. We also compared the activity of three red fluorescent reporter proteins [JRED (16), HcRED (17), and mRFP1 (18)] and two PET reporter proteins [truncated herpes simplex virus 1 (HSV1)-sr39 mutant TK (tTK) and truncated HSV1-WT TK (wtTK)] as other components of the triple fusion reporter vector by in vitro assays and in vivo imaging techniques (note: names of all the genes are italicized and corresponding proteins are capitalized). Among all these second-generation triple fusion reporter proteins, the mTFL-mRFP1-wtTK was able to preserve the highest activity of all the three reporter proteins both in cell culture and in living animals.
| Materials and Methods |
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Cloning of tfl and mtfl in eukaryotic and prokaryotic expression vectors purification of luciferase enzymes. PCR amplification and standard cloning techniques were used to insert the tfl gene from plasmid pCDNA 3.1-CMV-tfl into the prokaryotic expression vector pBAD-Myc-HisA. The SKL (tccaaattg) peptide sequence present at the end of the tfl gene was modified to IAV (atcgccgtg) by PCR (using a 3' primer-GGGAAGCTTCACGGCGATTCCGCC), and the PCR product was cloned in the pBAD-Myc-HisA and in the pCDNA3.1 (mammalian expression vector; modified bases are in bold). For protein purification, Escherichia coli strain Top10 cells were transformed with the pBAD-Myc-HisA-tfl/mtfl vectors and the proteins were purified using a Ni-NTA agarose (Qiagen, Valencia, CA) column following the protocol of the manufacturer. Fractions with high activity (measured in a luminometer by adding 100 µL LAR reagent to 5 µL protein of different fractions) were pooled together, desalted (using PD10 columns), and concentrated by spinning through a concentrator (Millipore, Billerica, MA). Protein estimation was done following the Bradford assay protocol. To measure the enzyme activities of the purified TFL and mTFL at different temperatures, 1 µg of each protein was incubated at 23°C, 37°C, and 40°C and luciferase activities were measured at specific time point. The proteins were stored on ice at 0 min time point.
Construction of mtfl-mrfp1-wttk and other fusion genes. PCR amplification and standard cloning techniques were used to generate the CMV-mtfl/tfl-mrfp1/jred/hcred-wttk/ttk fusion plasmids. Briefly, tfl and mtfl bioluminescence reporter genes, mrfp1, jred, and hcred fluorescence reporter genes and ttk and wttk PET reporter genes were amplified from the respective plasmids and cloned in frame in the existing triple fusion reporter vector CMV-fl-mrfp/egfp1-ttk (8) to construct the second-generation triple fusion vectors.
Cell lines, transient transfection, and stable cell generation. Chinese hamster ovary (CHO) cancer cells, 293T human embryonic kidney cells, MDA-MB human breast cancer cells, and C6 rat glioma cells were used (American Type Culture Collection, Manassas, VA). The C6, CHO, and MDA-MB cells were cultured in high glucose DMEM supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin. The 293T cells were cultured as described earlier (8). All transient transfections were carried out using the Superfect transfection reagent (Qiagen). For stable cell generation, the C6 cells were transfected with either fl-mrfp1-wttk or mtfl-mrfp1-wttk and then single clones were selected using G418 containing DMEM. For both plasmids, clones exhibiting highest activity for all the three reporters were selected and used further in vivo studies.
TK, FL, and ß-galactosidase activity. TK, FL, and ß-galactosidase (ß-Gal) enzyme activity was done as described previously (8).
Bioluminescence imaging of mutant FL expression in living mice. For in vivo bioluminescence imaging, mice were implanted with 293T cells transfected with different single, and fusion reporter genes were anesthetized and injected with 100 µL (15 mg/mL in PBS) of D-luciferin i.p. Mice were then scanned for 1 min using the Xenogen IVIS-200 optical imaging system (Xenogen Corp., Alameda, CA). Regions of interest (ROI) were drawn over the implanted cell area(s) and quantified by using the Living Image software version 2.5. Bioluminescence signal was recorded as maximum (photons/s/cm2/sr).
Fluorescence imaging of fusion vectors containing jred and mrfp1 reporter gene expression in living mice. All images were acquired using a Maestro in vivo imaging system (Cambridge Research and Instrumentation, Woburn, MA). The mice were anesthetized, injected with various numbers of cells transiently expressing the mtfl-mrfp1-wttk and mtfl-jred-wttk fusion genes, and then placed inside the imaging system. Multispectral imaging (MSI) data sets (cubes) were acquired with imaged spaced every 10 mm spectral interval in the 550 to 700 nm spectral range (excitation filter, 503550 nm; emission filter, 600700 nm). All the images were corrected for background autofluorescence.
Bioluminescence and microPET imaging of tumor xenograftbearing mice. Animal care and euthanasia were done with the approval of the Administrative Panels on Laboratory Animal Care of Stanford University. Four- to 6-week old nude mice (nu/nu; n = 6) were implanted s.c. with C6 cells stably expressing fl-mrfp1-wttk and mtfl-mrfp1-wttk fusion reporters on the two shoulders. When the tumors were of 6 to 8 mm size, mice were first imaged for bioluminescence and signals were measured as described above. The mice were then scanned using a microPET (Vista, GE, London, Canada) for 18F-FEAU uptake and 24 h after for 18F-FHBG uptake. Briefly, each mouse was injected with
200 µCi of each tracer i.v. and scanned for 10 min after 1 h. The microPET images were reconstructed with the ordered-subsets expectation maximization algorithm (21) and analyzed using a Medical Imaging Data Examiner (22). Volumetric ROIs were drawn over the tumors and the mean activities were recorded from the entire ROI. The percentage injected dose per gram (% ID/g) was calculated by dividing the ROI counts by the injected dose (decay corrected).
| Results |
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To compare the increased expression of mtfl and tfl over the fl in living mice, we implanted five million 293T cells transiently transfected with 5 µg DNA of CMV-mtfl, CMV-tfl, and CMV-fl plasmids on the backs of three (each group) nude mice. The mice were then scanned for 1 min at 24 and 48 h using a cooled CCD camera after i.p. injection of D-luciferin. Bioluminescence imaging of the cells expressing mtfl plasmid show 1.4-fold higher expression [4.4 x 107 maximum (p/s/cm2/sr)] than cells expressing tfl plasmid [3.06 x 107 maximum (p/s/cm2/sr); P = nonsignificant (NS)] and 2-fold higher than cells expressing fl plasmid [2.13 x 107 maximum (p/s/cm2/sr); P = NS] at 24 h from all three mice of each group (Fig. 2A ). The trend of increased bioluminescence activity among the three luciferases (mTFL>TFL>FL) is observed but statistical significance is not reached. At 48 h, bioluminescence signals decrease for each group of mice; however, the average fold difference of signals remains approximately constant (mtfl/tfl/fl, 2.6:1.3:1; P = NS; Fig. 2B).
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The mtfl-mrfp1-wttk triple fusion vector exhibits the highest level of bioluminescence and fluorescence in living mice compared with all vectors tested. Among the five new fusion vectors constructed in this study, we chose to use the CMV-mtfl-mrfp1-wttk and CMV-mtfl-jred-wttk vectors for further evaluation in living subjects as they preserve the highest activity of both bioluminescence (offers highest sensitivity among the three modalities) and PET (capable of tomographic and depth-independent information) reporter components. Two and four million 293T cells transiently expressing either CMV-mtfl-mrfp1-wttk or CMV-mtfl-jred-wttk fusion vectors (along with CMV-ß-gal) were implanted s.c. on the dorsal (left and right) side of four nude mice. The mice were first imaged for fluorescence and then for bioluminescence using a cooled CCD camera. Faint fluorescence signals are visible from the cells expressing CMV-mtfl-mrfp1-wttk vector but not from the CMV-mtfl-jred-wttk. However, the bioluminescence imaging of the same mice exhibit equal and proportionate signals by both two million [mtfl-mrfp1-wttk versus mtfl-jred-wttk (2.47 ± 0.6 versus 2.37 ± 0.8) x 107 maximum (p/s/cm2/sr)] and four million [mtfl-mrfp1-wttk versus mtfl-jred-wttk (3.53 ± 0.1 versus 3.11 ± 0.1) x 107 maximum (p/s/cm2/sr); P = NS] cells expressing the two different vectors (Fig. 4B ).
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To determine the absolute level of the fusion reporter proteins, equal number of cells from the above mentioned two groups were lysed and assayed for luciferase, TK, and ß-Gal activity. Both the cells expressing CMV-mtfl-mrfp1-wttk and CMV-mtfl-jred-wttk plasmids exhibit similar levels of mTFL and TK activity after normalization with ß-Gal activity (Fig. 4C).
Tumors expressing the mtfl-mrfp1-wttk fusion reporter show equal level of TK but higher FL activity than tumors expressing the fl-mrfp1-wttk fusion reporter in living mice. To compare the strength of these second-generation and previous fusion vectors for preclinical studies, we used a tumor xenograft model. We also used different 18F-labeled tracers to optimize reporter gene: reporter probe combination for molecular imaging. Five million C6 cells stably expressing either mtfl-mrfp1-wttk or fl-mrfp1-wttk fusion reporters were implanted on two shoulders of six nude mice. When the tumors reached 6 to 8 mm in diameter, mice were imaged for bioluminescence 10 min after i.p. injection of D-luciferin (Fig. 5A ). Tumors expressing mtfl-mrfp1-wttk vector show 1.4-fold higher bioluminescence signal (P = NS) than the tumor expressing the fl-mrfp1-wttk vector [(2.75 ± 0.1 versus 1.96 ± 0.15) x 105 maximum (p/s/cm2/sr); Fig. 5C].
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200 µCi) shows moderate and similar levels of uptake (1.37 ± 0.15 and 1.37 ± 0.22% ID/g) between the mtfl-mrfp1-wttkexpressing tumors and fl-mrfp1-wttkexpressing tumors (P = NS). Because WT TK has been shown to have preferential accumulation of the pyrimidine nucleoside analogues than the acycloguanosine analogues, we chose to compare the uptake level of 18F-FEAU and 18F-FHBG using the same group of mice. Twenty-four hours after following the scan with 18F-FEAU, mice were injected with 18F-FHBG (
200 µCi/mouse) and scanned for 10 min using the microPET (Fig. 5B). Again, both the mtfl-mrfp1-wttk and the fl-mrfp1-wttk tumors show near to equal level of 18F-FHBG uptake (0.26 ± 0.02 and 0.3 ± 0.06% ID/g; P = NS), which is 4- to 5-fold lower than the 18F-FEAU uptake (Fig. 5D). The luciferase activity and 18F-FEAU uptake of the tumors of these mice are well correlated (R2 = 0.69 for mtfl-mrfp1-wttk tumors; R2 = 0.59 for fl-mrfp1-wttk tumors). Due to very low accumulation of 18F-FHBG in the tumors, we did not obtain a good correlation between bioluminescence and microPET signal for both tumors. In agreement with our earlier study (19), 18F-FEAU showed very low activity by the gastrointestinal tract compared with 18F-FHBG (Fig. 5B). | Discussion |
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fl and rl are the most popular bioluminescent reporter genes for small animal imaging. Although both enzymes are capable of generating light after reacting with specific substrates, their sequence, substrate specificity reaction conditions, and rate of kinetics are very different. Higher emission wavelength and more stable light production always favor FL over RL for in vivo imaging. Nevertheless, the smaller monomeric nature of RL can better tolerate added molecular engineering (fusion or splitting) than FL, aimed for specific research. Active research to generate stable and red-shifted mutants of RL is going on our laboratory (26). The hrl-mrfp1-ttk constructed earlier had the capability of retaining highest activity for all the three reporter proteins among all the eight fusion vectors (8). However, this vector did poorly in certain studies (for e.g., cardiac imaging) where greater depth leads to less transmitted light. To improve the sensitivity of in vivo bioluminescence imaging, we emphasized the use of mtfl as the bioluminescent component of the next-generation triple fusion reporters. FL has turnover rate of 3 min at 37°C in vitro and 49.3 min in vivo in the presence of D-luciferin. Researchers have been actively mutating critical amino acids of FL to produce a more thermostable enzyme (12, 27). Tisi et al. (13) reported a thermostable mutant of fl (tfl bearing the mutations E354K, I232A, T214A, and F295L) and evaluated its thermostability and kinetics of light emission at the protein activity level. We used tfl to replace fl domain of our existing triple fusion genes (fl-mrfp1-ttk and fl-egfp-ttk) and achieve higher sensitivity for bioluminescence imaging. Although these new fusions (tfl-mrfp1/egfp-wttk/ttk) show 3- to 4-fold higher FL activity than the triple fusions (data not shown), the presence of the peroxisome targeting sequence (SKL) in tfl raised concerns about accumulation of the fusion protein in peroxisomes. For efficient expression and better access to the substrates, fusion proteins should be devoid of any organelle-specific localization sequence. We therefore mutated the SKL sequence of tfl to IAV to retain the fusion protein into cytoplasm. This mtfl shows a gain of 3- to 4-fold higher expression level in cell culture and 2-fold higher expression from living animals. Following the same trend found in cell culture, the purified mTFL shows 4- to 5-fold higher activity than purified TFL at 37°C. The crystal structure of FL shows that the SKL sequence in the luciferase structure remains disordered and exposed for allowing interaction with its receptor (10). We assume that a change in the peroxisome sequence might have altered the tertiary structure of FL ensuing enhanced interaction with the substrate. However, this change does not affect the thermostability of the enzyme. Further investigation is going on to uncover the specific reason of this enhanced activity. As expected, the triple fusions carrying the mtfl reporter show much higher bioluminescence activity than the previous fusion vectors both in vitro and in vivo.
We also tried to improve the other two components of the triple fusion construct, the PET and the fluorescent domains. Fluorescence imaging in vivo has generally been limited by the autofluorescence of tissues, which reduces the sensitivity of detection and accuracy of quantization of the labeled target (28). Using a multispectral instrumentation, we attempted to determine the sensitivity of these second-generation fusions for fluorescence imaging by implanting fewer numbers of cells expressing the fusion reporter. We were able to detect fluorescence signal from as low as one million cells s.c. implanted and expressing CMV-mtfl-mrfp1-wttk vector; this is a significant improvement over our earlier study (requiring a minimum of five million cells). Replacement of mrfp1 with jred or hcred does not result in overall improvement of the fusion vectors for fluorescent imaging. Several newer mutants of mrfp1 with increased photostability and brightness (mCherry and tdTomato) or far-red emission spectra (mPlum and mRaspberry at 649 and 625 nm) have been reported (29). Based on recent tests in xenograft models of metastatic breast cancer (30), tdTomato would be the most likely to provide a further improvement over mrfp1.
Our second-generation triple fusion vectors bearing mtfl, mrfp1/jred, and ttk show decrease in TK activity in cell culture compared with the first-generation constructs. However, the second-generation triple fusions with wtTK can preserve high activity as confirmed by in vitro assays and microPET imaging. HSV1-TK phosphorylates a range of substrates, including acycloguanosines (e.g., acyclovir, ganciclovir, and penciclovir) and uracil derivatives (e.g., FEAU). Several amino acids in HSV1-TK (Gln125, Arg176, Tyr172, and Met128) are critical for binding to either purine-like or pyrimidine-based nucleosides (30). The nucleobase moiety (either a thymine or a guanine ring) is stabilized by direct hydrogen bonds with the highly conserved Gln125 and Arg176 and the pyrimidine ring is further fixed by interaction with Tyr172 and Met128 in a sandwich-like orientation (31). Any change in the final tertiary structure caused by fusion of two or more polypeptide might result in change in activity. It could be possible that fusion of mtfl and mrfp1/jred to the mutant sr39 ttk alters the folding properties of the triple fusions leading to a decrease in TK activity either due to reduced binding to penciclovir or FHBG or overall reduction in the enzymatic property of TK. However, fusion of mtfl and mrfp1/jred with the wttk probably does not adversely modify the tertiary structure of the triple reporter proteins so that TK activity is maintained. An active area of research is to optimize the reporter gene/reporter probe combination for monitoring the HSV1-tk gene expression (32). Thus, we also compared the uptake level of 18F-FEAU and 18F-FHBG by these second-generation fusions carrying wttk. As shown earlier (19), 18F-FEAU exhibited 4- to 5-fold higher accumulation than 18F-FHBG in the tumors expressing mtfl/fl-mrfp1-wttk fusions. Because 18F-FEAU has a much lower activity in the gastrointestinal tract compared with 18F-FHBG (19), these second-generation fusions will be useful for studies involving gene expression near gastrointestinal tract. These current fusions with wttk reporter gene will also serve as important tools for assessing the specificity and pharmacokinetics of different radiotracers in living subjects.
The role of molecular imaging is continuously evolving. Instead of only being a conventional tool for translating cell-based approaches to living subjects, it is playing a proactive role in all stages of oncology diagnosis and therapeutic treatment and it is detecting intricate mechanisms of cell-cell interactions in physiologic milieu. These improved triple fusion vectors will allow us (a) monitor tumor progression as a very early stage, (b) detect micrometastases, and (c) image trafficking of fewer number of cells with greater sensitivity and higher spatial resolution, using bioluminescence and microPET imaging. Although the fluorescent component of these fusions needs improvement to gain higher quantum yield at far red-shifted wavelength for better in vivo fluorescence imaging, it will be useful for cellular imaging and fluorescence-activated cell sorting. These improved triple fusions will thus likely be a preferred choice for future imaging of early progression of tumors, cell-based therapies, and cell trafficking with greater sensitivity and specificity.
| Acknowledgments |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
We thank Dr. L. Tisi for the generous gift of thermostable FL (Institute of Biotechnology, University of Cambridge, Cambridge, United Kingdom); Drs. Fred Chin and S. Murugesan for the synthesis of 18F-FEAU and 18F-FHBG; and Dr. Shay Keren for microPET imaging.
Received 6/30/06. Revised 1/ 2/07. Accepted 1/25/07.
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