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Molecular Biology, Pathobiology, and Genetics |
1 Human and Environmental Toxicology, University of Konstanz, Konstanz, Germany and 2 Molecular and Special Toxicology, Bayer Healthcare AG, Wuppertal, Germany
Requests for reprints: Daniel R. Dietrich, Environmental Toxicology, Faculty of Biology, University of Konstanz, Jacob-Burckhardtstrasse 25, D-78457 Konstanz, Germany. Phone: 49-7531-883518; Fax: 49-7531-883170; E-mail: Daniel.Dietrich{at}uni-konstanz.de.
| Abstract |
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| Introduction |
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The objective of this study was to elucidate whether short-term exposure of Eker and wild-type rats to a non-genotoxic and a genotoxic renal carcinogen would result in compound-specific changes in renal nonneoplastic and preneoplastic pathology and cell proliferation rates. Subsequently, the hypothesis was investigated, whether compound-specific changes in histopathology and cell proliferation can be associated with respective changes in gene expression, and whether Eker and wild-type rats respond differently. This should allow identification of deregulated genes involved in known and novel pathways possibly mediating carcinogen-induced renal tumorigenesis. Accordingly, Eker and wild-type rats were treated with daily doses of the genotoxic and the non-genotoxic renal carcinogen aristolochic acid (AA) and ochratoxin A (OTA), respectively, for which renal tumor induction in long-term in vivo studies was previously shown (refs. 9, 10; see Supplementary Fig. S1 for compound structures).
Indeed, intragastric administration of 10 mg AA/kg body weight/day [representing a mixture of structurally related nitrophenanthrene carboxylic acids (mostly AAI and AAII)] to rats over 3 months was shown to induce tumors in the forestomach, kidney, and the urinary bladder (9). DNA reactivity of AA was confirmed in that the most frequent and persistent dAdenin-AAI adduct could lead to mutation and activation of the H-ras oncogene in the forestomach but not in kidneys of rats (11, 12) or to p53 mutations in urothelial tumors of humans (13). Despite the lack of H-ras mutations, higher levels of AA adducts were found in renal tissues than in the forestomach of orally treated Wistar rats (5 mg AA/kg body weight/day) after only 1 week of exposure (14), suggesting an H-rasindependent pathway of renal tumor induction. The genotoxic properties of AA are explained by the metabolic activation of AA by several phase I enzymes to a DNA-reactive aristolactam-nitriumion (1517). Similarly, the mycotoxin OTA increased the incidence of renal adenoma and carcinoma in rats when exposed for up to 2 years to dietary OTA (18) or 210 µg OTA/kg body weight/day via gavage (10). However, as OTA has not been convincingly shown to covalently interact with DNA, a non-genotoxic mechanism of action is assumed (19, 20).
The comparison of cell proliferation, pathology, and expression profiles of AA- and OTA-treated Eker and wild-type rats should allow for a more in-depth understanding of the involvement of the Tsc2-mTOR pathway as well as of other early gene expression changes in the etiology of carcinogen-induced renal tumors.
| Materials and Methods |
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Animals. Six- to 10-week-old genotyped heterozygous Tsc2 mutant Eker rats (Tsc2+/, Long Evans) were purchased from the M.D. Anderson Cancer Center and maintained at the University of Konstanz animal research facility under standard conditions with food and water ad libitum. Male rats were randomly assigned to dose groups [three animals per compound (or vehicle) and time point] and allowed to acclimatize to laboratory conditions for 4 weeks. Two weeks before exposure, rats were handled daily to reduce noncompound-related stress during exposure.
Heterozygous Eker rats were bred, and wild-type (Tsc2+/+) genotypes of the progeny were determined via PCR (21). Two weeks before exposure, 8- to 9-week-old genotyped male wild-type rats were randomly allocated to dose groups and accustomed to daily handling (see above).
Animal treatment and sample collection. Eker and wild-type rats were gavaged daily with OTA (210 µg/ kg body weight) or AA (10 mg/ kg body weight) dissolved in 0.1 mol/L sodium bicarbonate. Time-matched vehicle controls were gavaged with 0.1 mol/L sodium bicarbonate. Following 1, 3, 7, and 14 days of treatment, Narcoren (pentobarbital)anesthetized rats were sacrificed by exsanguination subsequent to retrograde perfusion with PBS. Left kidneys were collected, cross-sectioned into 5-mm slices, and stored in RNAlater (Qiagen) or in PBS-buffered histology fixative buffer containing 2% paraformaldehyde and 1% glutaraldehyde for subsequent paraffin embedding and sectioning.
Histopathology. For histopathologic examinations, H&E-stained sections were randomized, and pathologic analysis was carried out by light microscopy at 40- to 400-fold magnification. Nonneoplastic changes were classified as none (0), mild (1), moderate (2), strong (3), and severe (4), including intermediate classes (e.g., 0.5, 1.5, etc.), whereas total numbers of preneoplastic and neoplastic lesions were counted.
Immunohistochemistry. Cell proliferation was evaluated by immunohistochemical staining for proliferating cell nuclear antigen (PCNA) using monoclonal primary anti-PCNA antibody (PC-10; DAKO) in paraffin-embedded kidney sections.
Sections were deparaffinized, rehydrated in a decreasing alcohol series, and washed with PBS. For antigen retrieval, slides were placed in 0.1 mol/L sodium citrate buffer (pH 6), microwaved to boiling point thrice, and cooled to room temperature for 20 min. Sections were denatured with 4 N HCl (20 min at 37°C) and washed with PBS (2x 5 min), and nonspecific protein binding was blocked by preincubation with casein solution (Power Block, BioGenex) for 20 min. Sections were incubated with PC-10 primary antibody (diluted 1:50 in Power Block) at 4°C for 16 h. Antigen-antiserum complexes were visualized using the super sensitive alkaline phosphataselabeled, biotin streptavidinamplified detection system and Fast Red as chromogen according to the manufacturer's instructions (BioGenex).
Cell proliferation was quantified on PCNA-stained sections and randomized across all treatment and control groups. Twenty microscopic fields (x10 ocular, x40 objective) were randomly chosen in the outer cortex and inner cortex/outer medulla. All tubule cell nuclei were counted, concurrently differentiating between negative and positive PCNA staining. Nuclear labeling indices (LI %) for PCNA (PCNA-positive nuclei/total number of nuclei counted) were determined based on a minimum of at least 2,000 nuclei evaluated.
RNA isolation and expression profiling. RNA isolation from RNAlater-fixed kidneys was done as described previously (22). Starting with 5 µg of total RNA with a 28S/18S rRNA peak ratio >1.7, biotin-labeled cRNA was prepared and subsequently hybridized on Affymetrix Rat Genome RAE230A arrays according to the manufacturer's instructions (Affymetrix; GeneChip Expression Analysis 701194 Rev.1). This specific array contains 15,866 probe sets, corresponding to
5,399 annotated rat genes and 10,467 expressed sequence tags.
Microarray data processing and statistical analysis. Microarray quality control was done as described previously (22), and gene expression data were submitted to the GEO repository (accession no. GSE5923).3 Expressionist Analyst software (Genedata AG) was used for statistical analysis. Significantly deregulated genes per compound were selected based on the factors treatment and time as both single and interaction effects in a two-way ANOVA with Pcutoff of 0.005, combined with a 1.7-fold deregulation threshold for at least one time point. Significantly deregulated genes were divided into gene groups with distinct expression profiles over the time course using self-organizing map (SOM) analysis. SOM analysis also allowed deselection of genes showing inconsistent expression between the controls at different time points. Using the adjusted data sets, gene expression ratios of individual genes were calculated by dividing the respective expression values of single treated replicate samples by the mean expression value of all corresponding time-matched control samples. Heat maps were used to graphically display the relative expression data, after one-dimensional clustering of the genes (for the validation of microarray data, see Supplementary Information).
Functional analysis of microarray data. For functional analysis, each significantly deregulated gene was characterized according to the biochemical role of its encoded protein, whenever sufficient information from databases [e.g., NetAffx from Affymetrix (update from August 2006), Swissprot, Proteome, and Pubmed] was available. The consequence of the direction of deregulation was interpreted specifically with regard to possible downstream pathophysiologic effects. This allowed distribution of the deregulated genes into toxicologic categories (Supplementary Table S1) and facilitated the comparison of specific pathophysiologic pathways involved in the response of Eker and wild-type rats to AA and OTA treatment. In addition, the pathophysiologic pathways were compared with major pathways suspected to be involved in AA- and OTA-induced carcinogenesis (Tables 1 and 2 ) and histopathologic changes observed.
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| Results |
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Nonneoplastic Pathology
Overall, only marginal, strain-independent renal pathologic changes were observed (see Supplementary Tables S3 and S4). AA treatment of Eker and wild-type rats seemed to induce a slightly higher inflammatory response in the cortex, corroborating earlier reports by Chen et al. (24). Similarly, OTA treatment of Eker and wild-type rats led to the previously reported (25) increased prevalence and severity of apoptosis, karyomegaly, cell shedding, and tubular regeneration, primarily in the P3 portion of the proxima (Fig. 2E and F). In addition, an increased cell proliferation response was observed.
Gene Expression Profiles
Oral treatment of Eker and wild-type rats with AA and OTA, respectively, led to a significant deregulation of gene expression already after 1 day of exposure. Compared with the respective time-matched controls, the number of significantly deregulated genes increased with the duration of exposure in both strains. At all time points, compound-treated Eker rats consistently showed a higher number of significantly deregulated genes compared with their wild-type counterparts (Fig. 3
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Functional Analysis of Significantly Deregulated Genes
Many of the nonredundant genes deregulated by AA (Table 1) or OTA (Table 2) treatment in Eker and wild-type rats, respectively, could be associated with major pathophysiologic processes involved in renal toxicity and regeneration (see Supplementary Table S1).
Genes deregulated by AA
Metabolism and bioactivation. Treatment of Eker and wild-type rats with AA led to a prominent up-regulation of genes encoding phase I or phase II biotransformation enzymes or drug transporters (Table 1). Most of the genes were either constantly up-regulated over the whole exposure time frame or increasingly up-regulated with prolonged duration of exposure in both Eker and wild-type rats. In addition to the genes significantly deregulated in both strains, some genes met the significance criteria only in one or the other strain. Yet, the direction of deregulation was mostly comparable (e.g., GSTM2 or CES3, apparently specific for Eker or wild-type rats, respectively).
DNA damage response. p53 is inducible by DNA damage and oxidative stress. The up-regulation of several p53 pathway genes, as observed in Eker and wild-type rats, was therefore summarized as DNA damage response (including oxidative stress). Most genes involved in this category showed a time-dependent increase with the highest deregulation values after 14 days of treatment and met the significance criteria in both strains.
Inhibited cell survival and proliferation. In conjunction with the DNA damage response described above, down-regulation of antiapoptotic genes and genes involved in DNA replication and cell cycle progression as well as the up-regulation of proapoptotic genes were observed. These genes showed a comparable time-dependent increase in expression as the genes representing the DNA damage response (see above), with the highest deregulation values after 14 days of treatment. In contrast to the DNA damage response genes, many of these genes showed an apparently strain-specific deregulation, yet again with a qualitatively similar expression pattern for most of them in both strains. An exception to the latter observation were genes directly involved in the G2-M transition of the cell cycle, which were specifically and consistently down-regulated in wild-type rats.
Enhanced cell survival/cell proliferation. Only three genes were assigned to this category. The Tsc1 tumor suppressor gene, which is known to be associated with Tsc2 (8), was significantly down-regulated in Eker but not wild-type rat. Enhanced cell survival and proliferation induced by AA was suggested by the observed up-regulation of a positive regulator of cell proliferation (KEG1) and the down-regulation of a proapoptotic gene (WWOX).
Genes deregulated by OTA
Biotransformation. OTA treatment down-regulated the expression of several phase I and phase II enzymes and drug transporter genes in both strains (Table 2). Although this effect seemed constant over time for some genes, most deregulated genes showed an enhanced down-regulation with increasing exposure time. Besides the down-regulation of numerous genes coding for components of the biotransformation machinery, OTA treatment resulted in an increased up-regulation of the phase I gene CYP4A12 in both strains and a consistent up-regulation of phase I ALDH6A1 in Eker rats.
DNA damage response (including oxidative stress). OTA treatment led to significant up-regulation of p53 pathway genes in both strains. However, the up-regulation of these genes differed between the two strains. Eker rather than wild-type rats showed an up-regulation of genes known to be involved in oxidative stress responses as well as down-regulation of genes that code for products with extracellular antioxidant activities. The latter genes and the up-regulated KEAP1, which suppresses the transactivation of antioxidant responsive elements, were categorized as "enhanced oxidative stress."
Cellular stress. A general stress response, as indicated primarily by the up-regulation of several components of the stress-inducible mitogen-activated protein kinase pathway, was predominantly detectable in Eker rats because the latter genes were not significantly deregulated in wild-type rats.
Inhibited cell survival and proliferation. Predominantly OTA-treated Eker rats presented with an up-regulated expression of tumor suppressor, negative cell proliferation control, and proapoptotic response genes. However, in both strains, an inhibited cell survival response could be inferred from the up-regulation of a proapoptotic gene and the down-regulation of an antiapoptotic and a DNA replication gene.
Enhanced cell survival and proliferation. Numerous genes coding for regulators of cell survival signaling pathways [e.g., the insulin-like growth factor (IGF)-PI3K-PKB pathway], antiapoptosis, mitosis, growth, and proliferation (including proto-oncogenes) were primarily up-regulated in Eker rats, whereas a tumor suppressor gene and a gene coding for a signal cascade inhibitor (OVCA2) was down-regulated. In comparison, the latter genes were not or only marginally deregulated in the wild-type rats treated with OTA.
Cell cycle progression and mitosis. Up-regulation of genes, more directly involved in the cell cycle progression, was categorized separately as they seemed as an entity distinct from the category "enhanced cell survival and proliferation." Remarkably, gene deregulation that would further cell cycle progression was exclusively observed in Eker rats.
Cell structure remodeling. Similar to the effects observed for genes involved in enhanced cell survival and proliferation (see above), genes coding for components and regulators of the cytoskeleton altered cell-cell adhesion or communication, and components of the Rac and Rho signaling were almost exclusively up-regulated in Eker rats.
Epithelial-mesenchymal transition/fibrosis. This category includes regulators of cell proliferation, growth factor activation, cell adhesion, and extracellular matrix known to be associated in the process of epithelial-mesenchymal transition (EMT) and/or fibrosis and that could be associated with the progression of renal and urothelial tumors. Such increased expression of components of the transforming growth factor-ß (TGF-ß) pathway and of a hepatocyte growth factor activator-inhibitor gene in conjunction with a down-regulated expression of extracellular matrix protease genes were predominantly deregulated in Eker rats.
| Discussion |
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Similar to AA, OTA treatment was not associated with an increased prevalence or number of lesions in wild-type rats despite the clearly enhanced cell proliferative response in the renal cortex. The latter observation corroborates numerous earlier findings (10, 25), suggesting that non-genotoxic compound-induced renal carcinogenesis can only be observed after a prolonged compound exposure period. In contrast to the situation in the wild type, Eker rats presented with a significantly increased prevalence and number of atypical tubules on day 14 of OTA treatment (Fig. 1E; Supplementary Table S2). The latter finding suggests that the increased cell proliferative stimulus (Fig. 1C) provided for an enhanced manifestation of the predisposition for renal neoplasia mediated by the Tsc2 mutation and thus a direct or indirect interaction of OTA with Tsc2 (tuberin) pathway.
At the outset of this experiment, it was assumed that each compound would induce a distinct gene expression profile, which is reflected by the short-term pathology but also displays characteristic genes representative for pathways involved in the compound-specific type of renal carcinogenesis. Consequently, the genotoxic AA was expected to induce a gene expression profile, most likely involving genes of cell cycle arrest and DNA damage repair but not cell proliferation and most likely would not involve Tsc2. Indeed, the expression profiles of AA-treated Eker and wild-type rats (Fig. 3) were not distinctly different and were similar to expression profiles obtained with AA in kidneys of Big Blue transgenic F344 rats (24). Several phase I genes were deregulated by AA treatment from the first day of exposure. The gene product of one of the up-regulated phase I genes (NQOI) was previously shown to be capable of reducing the nitro group of AAI leading to metabolic activation. NQOI up-regulation could, therefore, be at least partly responsible for DNA adduct formation (16). Although DNA adduct formation could not be measured with the study design employed, previously published reports support the assumption that AA DNA adducts are formed (14). Indeed, up-regulation of several p53 pathway genes, including p53 target genes carrying a p53 consensus sequence in the promoter region, was most prominent on days 7 and 14 of exposure, indicating a DNA damage response upon bioactivation of AA. This interpretation is further supported by the fact that several of the p53 target genes (e.g., MDM2, p21, or CCNG1) have also been shown to be up-regulated in rat liver after short-term exposure to different known genotoxic compounds (22). DNA damage and activation of p53 pathway genes are expected to result in cell cycle arrest (Fig. 4A ) followed by damage repair or programmed cell death (26). AA treatment led to the deregulation of several genes involved in apoptosis, with a comparable time profile to the p53 pathway and target genes. Although cell cycle components are predominantly regulated on the protein level, down-regulation of genes crucial for the G2-M transition (e.g., CDC2, Cyclin B, TOME1, and CKS2) and down-regulation of genes required for mitotic spindle formation, like TUBA1 or HMMR, suggest a G2 arrest. Deregulation of the latter genes in wild-type rats only may be explained by 12-fold lower PI3K mRNA expression compared with Eker rats (27). Increasing evidence suggest that constitutive activation of the PI3K pathway could lead to defects in DNA damage checkpoint control (28). Consequently, AA-induced G2-M arrest would, therefore, not be readily detectable in Eker rats, although they responded with up-regulation of proapoptotic genes as well as down-regulation of Ki-67, an observation also supported by the cell proliferation and pathologic analysis (Fig. 1A and B).
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As shown, OTA treatment of Eker rats led to the expression of genes that could be intricately involved in, or are the result of, activated mTOR signaling (38). Thus, OTA treatment and the Tsc2 mutation may have acted in concert or separately on the (IGF)-PI3K-AKT pathway, thus resulting in a co-joint activation of mTOR signaling. Additional stimulation of the mTOR pathway could be possible by OTA-mediated extracellular signal-regulated kinase (ERK) activation (35). Tsc2 was shown to be a direct substrate of ERK (39). As Eker rats exhibit only one functional allele of the Tsc2 gene, OTA-mediated ERK-dependent inactivation of Tsc2 could lead to more drastic and therefore earlier detection of proliferative effects and neoplastic transformation in Eker rats (Fig. 4B).
In summary, gene expression profile comparisons with histopathologic findings from AA- and OTA-treated Eker and wild-type rats discussed here highlight that gene expression analysis subsequent to short-term in vivo assays may have the potential to identify deregulated genes involved in compound- and strain-specific pathology. Moreover, deregulation of genes, for which a similar direction of deregulation has been reported for various types of cancers, suggests that pathways linked to tumorigenesis may be deregulated already after short-term carcinogen exposure. Whether these changes in gene expression are transient or can be causally linked to a compound-specific tumorigenicity cannot be determined without gene expression profile analysis of the respective preneoplastic and neoplastic lesions in rats chronically treated with AA or OTA. This analysis, as currently carried out in this laboratory using laser-capture microdissection (40), will provide further information as to the relevance of the pathways identified in short-term experiments for the understanding of the mechanisms underlying AA- and OTA-induced renal carcinogenesis.
| Acknowledgments |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
We thank Tanja Lampertsdörfer and Gudrun von Scheven for skillful assistance during the whole animal experiment; Evelyn O'Brien and Alexandra Heussner for help with the animal sacrifice; and Margot Thiel and Kerstin Lotz for microarray hybridization.
| Footnotes |
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3 http://www.ncbi.nlm.nih.gov/projects/geo ![]()
Received 9/29/06. Revised 2/12/07. Accepted 2/22/07.
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