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1 Human Oncology and Pathogenesis Program, 2 Department of Pathology, 3 Thoracic Service, Department of Surgery, and 4 Department of Medicine, Memorial Sloan-Kettering Cancer Center; 5 Department of Medicine, Weill Medical College of Cornell University, New York, New York; 6 Genome Sequencing Center, Washington University School of Medicine, St. Louis, Missouri; 7 Max Planck Institute for Neurological Research; and 8 Department for Internal Medicine, University of Cologne, Cologne, Germany
Requests for reprints: William Pao, Human Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, 417 East 68th Street, ZRC 602, New York, NY 10065. Phone: 646-888-2642; Fax: 646-888-2595; E-mail: paow{at}mskcc.org.
| Abstract |
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| Introduction |
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10% and 20% of tumors, respectively, somatic mutations have also been identified in HER2/ERBB2 (
2%; exons 19 and 20), the lipid kinase PIK3CA (
4%; exons 9 and 20), and the serine/threonine kinase BRAF (
2%; exons 11 and 15; ref. 2). All alterations have been shown to confer gain-of-function properties in comparison with their respective wild-type counterparts. Except for PIK3CA alterations (3), mutations in EGFR, HER2, BRAF, and KRAS rarely occur in the same tumor, suggesting that they may have functionally equivalent roles in lung tumorigenesis. These mutations are found predominantly in tumors with adenocarcinoma histology. The mitogen-activated protein kinase (MAPK) pathway plays a major role in the EGFR signaling cascade. After activation of EGFR signaling, key downstream steps involve phosphorylation by RAF1 kinase of two distinct serine residues on both MEK1 and MEK2 (4). The MEK proteins share 80% sequence homology and encode dual-specificity kinases of the STE kinase family (homologues of yeast sterile-7, -11, and -20; ref. 5). MEK1/2 subsequently phosphorylate specific threonine and tyrosine residues in the activation loops of ERK1/2.
Altered MEK proteins have been implicated in cancer. A transformation-competent mutant of MEK1 with a Q56P substitution in the nonkinase portion of the kinase has been described in rat fibroblasts (6), and engineered mutants (with alterations of the key regulatory serine residues) can transform NIH 3T3 cells (7). Recently, a human ovarian cancer cell line, ES-2, was found to harbor an activating mutation in MEK1 that substitutes asparagine for aspartic acid at position 67 (D67N; ref. 8). Moreover, small-molecule inhibitors of MEK seem to be promising as antitumor agents (9). However, to our knowledge, somatic mutations in MEK1/2 have not yet been reported in lung cancer.9
Here, we report identification of a novel somatic mutation in MEK1 in human lung tumors, identified via mutational profiling of genes encoding EGFR signaling pathway proteins in a large cohort of lung adenocarcinomas (10). We determine the functional consequences of this genetic alteration in two separate cell systems. We also examine a large collection of primary tumors and cell lines for the presence of this and other MEK1 exon 2 mutations.
| Materials and Methods |
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Mutation verification. See ref. 10 for details. All mutations were verified by bidirectional sequence analysis of an independent PCR product. Variants were deemed somatic if they were found to be absent in matched normal tissue. A combination of dideoxynucleotide sequencing and/or mass spectrometry–based genotyping (Sequenom) was used to screen additional tumor samples for MEK1 exon 2 mutations. Primers used for MEK1 exon 2 sequencing were 5'-TTTCTTTCCATGATAGGAGT-3' and 5'-ATCAGTCTTCCTTCTACCCT-3'.
Expression constructs. The full-length human MEK1 cDNA cloned into the pDNR-Dual vector was obtained from the Harvard Institute of Proteomics. Specific mutations were generated using a QuikChange Site-Directed Mutagenesis Kit (Stratagene) with the following primers: 5'-TTACCCAGAATCAGAAGGTGG-3' and 5'-CCACCTTCTGATTCTGGGTAA-3' to create MEK1 K57N, and 5'-GCTGGCGTCTAGGGAAGCTTT-3' and 5'-AAAGCTTCCCTAGACGCCAGC-3' to recreate a stop codon. MEK1WT and MEK1K57N cDNAs were cloned into pLP-CMVneo plasmid using the Creator DNA Cloning Kit (Clontech). Expression plasmids encoding mutant BRAFV600E or KRASG12V were kind gifts from J. Fagin (Memorial Sloan-Kettering Cancer Center, New York, NY) and M. Phillips (New York University, New York, NY), respectively.
The full-length human ERBB4 cDNA was obtained in pCMV6-XL5 from Origene. The N181S mutation was generated using the QuikChange Kit and primers 5'-GTGTCAACAAGTGGTAGTTCA-3' and 5'-TGAACTACCACTTGTTGACAC-3'.
Cell culture. 293T cells, maintained as per established protocols, were transfected with pLP-CMVneo vector alone, pLP-CMVneo MEK1WT, pLP-CMV-neo MEK1K57N, pCMV6-XL5 ERBB4WT, or pCMV6-XL5 ERBB4N181S using FuGENE 6 Transfection Reagent (Roche Diagnostics).
Ba/F3 cells, maintained as per established protocols, were transfected with expression plasmids using Nucleofector II and the Cell Line Optimization Kit V (Amaxa Biosystems). Stable clones were then derived by 14-d selection in 1.25 mg/mL G418. To obtain interleukin-3 (IL-3)–independent Ba/F3 clones, IL-3 was removed from the cell culture media. Ten days after the first round of IL-3 withdrawal,
17% and 4% of cells harboring mutant and wild-type cDNAs, respectively, were viable. These cells were then recultured in the presence of IL-3, and after a second round of IL-3 withdrawal,
50% and 2% of cells harboring mutant and wild-type cells, respectively, were viable (data not shown). After a third round of IL-3 withdrawal, the majority of cells harboring mutant MEK1 cDNAs survived and were able to proliferate in the absence of IL-3. No cells harboring wild-type MEK1 cDNAs were alive. Comparable results were obtained from an independent transfection of parental Ba/F3 cells. All IL-3–independent clones were verified by direct sequencing to harbor mutant cDNAs.
Immunoblotting. Cell lysates were examined using established protocols. Total MEK1, phospho-ERK1/2 (Thr202/Tyr204), total ERK1/2, and secondary horseradish peroxidase–conjugated antirabbit antibodies were from Cell Signaling Technology.
Cellular assays. To assess cellular proliferation, G418-resistant Ba/F3 cells carrying either MEK1WT or MEK1K57N, respectively, were plated in the absence of IL-3 on day 0, along with parental Ba/F3 cells cultured with or without IL-3. Viable cells were counted by trypan blue staining each day for 4 consecutive days. Values reported were calculated as percent of viable cells compared with those obtained from day 0. All assays were done at least two independent times.
To assess cell growth inhibition, cells were seeded in 96-well plates (6 x 104–8 x 104 per well) in triplicate and treated with different concentrations of AZD6244. Cell growth inhibition was measured at 48 h posttreatment using CellTiter Blue Reagent (Promega). All assays were done at least two independent times.
| Results |
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Here, we examined the remaining putative genetic variants occurring in exons encoding domains outside of the kinase regions of their respective kinases. Of 82 putative nonkinase domain sequence variations, representing 69 distinct types of mutations, we confirmed the existence of 27 (18 distinct types) on sequencing a second independent PCR product from tumor DNA. We found 22 of the 27 (12 types) in corresponding matched normal tissue, suggesting that they were single nucleotide polymorphisms. Two variants were of unknown significance (ERBB4: P572L, FGFR4: C56S) because we were unable to obtain a PCR product from matched normal samples.
Of the remaining three confirmed somatic mutations, one involved an A
G change at nucleotide 542 in exon 4 of ERBB4, which substitutes serine for asparagine at position 181 (data not shown). This mutation was found in 1 of 171 lung tumor samples. The N181S substitution does not seem to grossly affect kinase activity; (a) according to the polymorphism phenotyping bioinformatics tools PolyPhen and SIFT, an N181S substitution is predicted to be "benign" and "tolerated," respectively; and (b) lysates from 293T cells transiently transfected with cDNAs encoding wild-type or N181S ERBB4 do not display major differences by immunoblotting in phosphotyrosine reactivity of ERBB4 protein (data not shown).
The remaining two confirmed somatic mutations involved the same G
T transversion in exon 2 at nucleotide 171 of MEK1, found initially in 2 of 93 independent lung tumor samples (of which, 89, including the two with MEK1 changes, were of adenocarcinoma histology; Fig. 1A
). This change substitutes asparagine for lysine at position 57. K57 is highly conserved among various species (Fig. 1B) and is located between the nuclear export signal (amino acids 33–44) and kinase domain (amino acids 68–271) of MEK1 (Fig. 1C). Consistent with the G
T mutation, a type of transversion known to be smoking related, both samples harboring the MEK1K57N mutation were from former smokers. Neither patient had prior chemotherapy or exposure to asbestos or radiation. Both patients presented with stage IA disease and are alive with nearly 4 years of follow-up. Notably, neither of these two tumors harbored mutations in EGFR, HER2, KRAS, BRAF, PIK3CA, or FGFR4.
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We next assessed whether a small-molecule MEK inhibitor, AZD6244 (13), could affect biological properties induced by the MEK1 mutant. AZD6244 treatment of 293T cells transiently transfected with plasmids encoding MEK1K57N cDNAs readily inhibited the appearance of ERK phosphorylation (Fig. 3A ). Moreover, compared with parental Ba/F3 cells growing in IL-3, IL-3–independent MEK1K57N-harboring Ba/F3 cells were more sensitive to the MEK inhibitor (Fig. 3B). Because the administration of IL-3 to cultures of cytokine-independent MEK1K57N-harboring Ba/F3 cells prevented AZD6244-induced growth inhibition, these data suggest that MEK inhibitors may effectively target cancer cells that depend on the activity of mutant MEK1 for survival.
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| Discussion |
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K57 is located in a region between the nuclear export signal and catalytic domain of MEK1. How the K57N substitution affects the structure of MEK1 is unclear, as the solved crystal structure of MEK1 analyzed only amino acids 62 to 393 (14). Preliminary experiments using green fluorescent protein–tagged wild-type and mutant proteins suggest that the mutation does not affect the cytoplasmic localization of the protein (data not shown).
Nonetheless, multiple functional studies involving amino acids in this region of the protein show that it seems to be critical for the regulation of MEK1 activity. For example, in the study that originally identified the Q56P mutation, MEK1Q56P-glutathione-S-transferase fusion proteins were
170-fold more active than the wild-type counterparts in terms of their ability to phosphorylate recombinant ERK in vitro (6). In a separate study, deletion of a predicted
-helix encompassing residues 32 to 51 resulted in a mutant (
N3) with basal activity 45 times greater than that of the wild-type enzyme (7). Similarly, the K57N substitution, shown here, and the D67N substitution (8) both lead to constitutive activation of the MAPK pathway in vitro.
Whereas somatic alterations in MEK1 have not yet been reported in human lung cancers, recent studies have identified germ-line MEK1 mutations in patients with cardio-facio-cutaneous (CFC) syndrome, a complex developmental disorder involving the heart, face, and skin (15). Mutations in affected individuals include F53S, del59K, P124L/Q, G128V, and Y130C (Fig. 1C), the latter two of which occur in the kinase domain (15, 16). The F53S mutant, like the Y130C mutant, is more active than wild type protein in stimulating ERK phosphorylation (15). It is not yet clear if CFC patients are at an increased risk for cancer, but three affected individuals have developed neoplasms (i.e., rhabdomyosarcoma, hepatoblastoma, and acute lymphoblastic leukemia; refs. 17–19). In future studies, it will be interesting to compare the functional consequences of germ-line versus somatic mutations in MEK1. Notably, germ-line mutations in KRAS and BRAF, associated with Noonan and CFC syndromes, respectively, are also different from their somatic counterparts found in human cancers (15, 20).
Finally, we show that the downstream effects induced by the MEK1K57N mutant can be inhibited by treatment with a selective MEK inhibitor. Taken together, our results suggest that mutant MEK1 may provide a target for anticancer therapy in a small subset of patients with lung adenocarcinoma.
| Disclosure of Potential Conflicts of Interest |
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| Acknowledgments |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
We thank H. Varmus for critical reading of the manuscript, M. Balak and A. Lash for their contributions, and P. Smith and AstraZeneca for providing unpublished data and AZD6244.
| Footnotes |
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9 http://www.sanger.ac.uk/genetics/CGP/cosmic ![]()
10 K. Michel and R. Thomas, unpublished data. ![]()
11 P. Smith (Astra Zeneca), personal communication. ![]()
Received 1/ 9/08. Revised 4/15/08. Accepted 5/ 8/08.
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