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Immunology |
Departments of 1 Medical Biochemistry and Immunology and 2 Pharmacology, Therapeutics and Toxicology, School of Medicine, Cardiff University, Cardiff, United Kingdom
Requests for reprints: Rossen M. Donev, Department of Medical Biochemistry and Immunology, School of Medicine, Cardiff University Heath Park, Cardiff CF14 4XN, United Kingdom. Phone: 44-029-206-87868; Fax: 44-029-206-87079; E-mail: donevrm{at}cardiff.ac.uk.
| Abstract |
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| Introduction |
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Most monoclonal antibodies (mAb) used in anticancer immunotherapy activate complement; however, strong evidence for a role of complement in cancer regression exists only for rituximab (anti-CD20; 8). For the majority of therapeutic mAb, complement likely plays little or no role in tumor clearance because the tumor abundantly expresses mCReg (9). Indeed, repeated suboptimal rituximab treatment caused resistance to complement killing in the B-cell line RAMOS by inducing increased expression of CD55 and CD59 (10). Blocking of CD55 and CD59 increased the effectiveness of therapeutic mAb killing in lymphoma cells in vitro (11) and in animal models (12), confirming the protective role of mCReg. Although blocking of the mCReg with mAbs enhances complement-mediated immunoclearance of tumors, their high molecular mass and the ubiquitous expression of their targets are serious limitations for their application in humans. An alternative approach, down-modulation of mCReg has been successfully achieved in vitro by RNA interference; however, there are numerous problems (e.g., in vivo stability, tissue specific targeting, and unwanted immune system activation) currently preventing use in vivo (13).
These facts justify development of new strategies to overcome the stated drawbacks. We reasoned that a novel approach, inhibiting expression of mCReg genes by targeting their transcriptional regulators, could reduce mCReg expression and considerably enhance the therapeutic potential of currently used anticancer immunotherapy. Little is currently known about the mechanisms that control expression of the mCReg. We have recently shown a modulation of CD59 expression by p53 during treatment of neuroblastoma cells with chemotherapeutics (14). Here, we have extended this work and identified additional and novel molecular mechanisms leading to overexpression of CD59 in neuroblastoma. We implicated the neural-restrictive silencer factor (REST) as an important regulatory component of the transcriptional machinery of the CD59 gene. REST was originally described as a transcriptional repressor of neuronal gene expression (15, 16); however, recently, it has emerged as a tumor suppressor capable of transforming epithelial cells when mutated (17). Thus far, REST has been found to be a target for several different types of mutations in neuroblastoma (18), small-cell lung carcinoma (19), and colorectal cancer (17).
Based on our finding that REST is involved in modulation of CD59 expression in neuroblastoma, we designed REST peptides that targeted the identified transcriptional regulators of CD59, reduced CD59 expression, and sensitized tumor cells to complement-mediated killing triggered by a mAb used in neuroblastoma immunotherapy.
| Materials and Methods |
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Preparation of nuclear lysates and Western blotting. Nuclear protein extracts were prepared from all neuroblastoma cell lines as described previously (20). Expression of REST was detected in the lysates by Western blotting (14) with rabbit polyclonal anti-REST antibody (H-290) raised against amino acids 1-290 of the protein (Santa Cruz Biotechnology). This antibody recognizes both the full-length and the truncated REST isoforms.
Design of promoter constructs. Expression constructs were prepared by ligating the CD59 promoter fragments into the pEGFP-1 vector (Clontech). This promoterless vector contains a cloning site immediately upstream of the enhanced green fluorescent protein (EGFP) reporter gene. The promoter fragments were amplified from human genomic DNA using a common reverse primer containing restriction site (underlined) for AgeI enzyme (GCACCGGTAAGATCCTCTTCCAGCCTCGA) and a series of forward primers with KpnI restriction site (underlined): CGCCGGTACCTGAATTCAGATTTGTGCACA for the –2140 construct; CGCCGGTACCTCCGCGCGGGGGTGGAGGGAGA for the –151 construct; ATTAGGTACCAAGGGCATCCTGAGGGGC for the –70 construct and ATTAGGTACCCCTTGCGGGCTGGAGCGAA for the –35 construct. The amplified fragments and the plasmid were digested with AgeI and KpnI. After ligation into pEGFP-1, the nucleotide sequence of the inserts was determined by sequencing to ensure that PCR artifacts had not been introduced.
The reporter constructs were transfected into neuroblastoma cells using the jetPEI reagent (Autogen Bioclear UK Ltd.). Cells were then analyzed for expression of EGFP by flow cytometry.
Electrophoretic mobility shift assay. Biotinylated sense and antisense strands of the 35-bp regulatory sequence (Fig. 1C ) were purchased from Biomers.net GmbH. Oligonucleotides (200 pmol each) were mixed in equimolar amounts in 50 µL of annealing buffer [50 mmol/L KCl, 1.5 mmol/L MgCl2, Tris-HCl (pH 8.3)], placed in a boiling water bath for 2 min, and allowed to cool slowly to room temperature. The annealed DNA probe (10 pmol per reaction) was incubated with nuclear protein extracts from IMR32, Kelly, or normal human brain (Active Motif) and DNA was separated and detected as previously described (21).
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Design of peptides for suppression of expression of CD59. To test the effect of REST- and p53-derived peptides on expression of CD59, several pDR2
EF1
-based constructs for expression in mammalian cells were designed. Sequence encoding REST58 was amplified from IMR32 cDNA using the following pair of primers: CGATCTAGAGCCACCATGTATAAATGTGAACTT (forward) and AGAGGATCCTCAATGCTTAGATTTGAAGT (reverse). Forward and reverse primers contained restriction sites (underlined) for XbaI and BamHI, respectively, which were used for cloning into the pDR2
EF1
vector after digestion with the same enzymes. For the REST68 expression construct, domain 5 from REST58 was replaced with a nuclear localization signal (NLS). For this purpose, the same reverse primer was used; however, to accommodate the long extension at the 5'-end, a series of five forward primers were designed, F1 to F5, that partially overlap, and five sequential amplifications, starting with F1 and finishing with F5, were performed. The sequences of these primers were:
The F5 primer contained an XbaI restriction site (underlined). All constructs and products were sequenced to ensure their fidelity.
To express the p53i peptide containing a NLS at the NH2 terminus, we synthesized the sense (CTAGAGCCACCATGATGCCAAAAAAAAAACGTAAAGTGGGTGGTGGTGGTTCTTATGGTTTTCGTTTAGGTTTTTTACATTCTGGTACTGCTAAATCAGTTACTTGTACATACTGAG) and antisense (GATCCTCAGTATGTACAAGTAACTGATTTAGCAGTACCAGAATGTAAAAAACCTAAACGAAAACCATAAGAACCACCACCACCCACTTTACGTTTTTTTTTTGGCATCATGGTGGCT) oligonucleotides (Biomers.net GmbH). They were annealed, leaving XbaI and BamHI sticky ends at their 5'- and 3'-ends, respectively, and were ligated to an appropriately digested pDR2
EF1
vector. Constructs were transfected into neuroblastoma cells using jetPEI reagent and cells were selected in medium containing hygromycin B (Invitrogen).
Chromatin immunoprecipitation. Kelly cells transfected either with the REST68 expression construct or the empty vector were analyzed as described previously (23). The immunoprecipitation was carried out either with rabbit polyclonal anti–acetyl-p53 (Lys373, Lys382; Upstate), rabbit polyclonal anti-Sp1 (Merck), rabbit polyclonal anti-AP2 (Merck), sheep polyclonal anti-CPBP (R&D Systems Europe Ltd.), or a mixture of rabbit polyclonal anti-REST (H-290) and goat polyclonal anti-REST (P-18; Santa Cruz Biotechnology) raised against peptides mapping within the NH2 terminus and the internal region of the protein, respectively. Mixing both anti-REST antibodies was necessary to ensure recognition of both the truncated isoform of REST and the REST68 peptide. Nonimmune rabbit IgG was used as a control for the background of these experiments. The naked coimmunoprecipitated DNAs were then used as templates in quantitative PCR (QPCR) assays as described below. Statistical significance of the data was assessed by the Student's t test.
Reverse transcription-PCR and QPCR. Total RNA from frozen patient samples and neuroblastoma cell lines was purified using the GenElute Mammalian Total RNA Miniprep kit (Sigma-Aldrich). Total RNA from normal primary neurons was obtained from TCS Cellworks. To detect the REST isoforms expressed by neuroblastoma cells and tissue samples, a conventional reverse transcription-PCR (RT-PCR) was performed using either a pair of primers on each side of the mutated sequence or with a nested reverse primer within the insert (19). For semiquantification of CD59 expression, CD59-specific primers (TGCAATTTCAACGACGTCACA, forward, and GAAATGGAGTCACCAGCAGAAGA, reverse) and a GAPDH-specific primer pair (24) as a control were used. cDNA were synthesized using TaqMan Reverse Transcription reagents (Applied Biosystems) and the amplification was carried out with Platinum Blue PCR SuperMix (Invitrogen).
To quantify the CD59 copies in purified RNAs and to analyze the data, we followed the procedure described previously (14). At least two independent experiments were done for each mRNA, and Student's t test was applied to calculate the significance in changes of expression pattern. In a similar manner, we quantified the binding of different transcription factors to the CD59 promoter. Immunoprecipitated DNAs were used as templates (10 ng per reaction) in a quantitative assay with primer pairs for detection of either the 35-bp positive regulatory sequence (AAGGGCATCCTGAGGGGC, forward; TTTCGCTCCAGCCCGCAAG, reverse) or the two p53-binding sequences (14). Two independent analyses of the immunoprecipitated DNAs were carried out for each antibody.
Flow cytometry. The effect of different expression constructs on expression of CD59 at protein level was assessed by staining the neuroblastoma cells (3 x 105) with mouse monoclonal anti-CD59 antibody (BRIC229) for 30 min on ice. The unbound antibody was removed by three washes with flow cytometry buffer [PBS containing 10 mmol/L EDTA, 1% bovine serum albumin (pH 7.4)]. The cells were then incubated for another 30 min with 1:100 dilution of FITC-conjugated anti-mouse immunoglobulins (The Binding Site), washed thrice with flow cytometry buffer, and analyzed on a BD FACSCalibur. All measurements were made in duplicate and each experiment was replicated twice. Results were combined and statistically analyzed by Student's t test. P < 0.05 was considered to show statistically significant differences.
Complement lysis assay. Normal human serum (NHS), obtained as described previously (14), was the source of complement in all experiments. Neuroblastoma cells transfected with either empty pDR2
EF1
or constructs expressing REST68 were suspended in RPMI 1640 culture medium without FCS and transferred into 96-well plates (104 cells per well) with anti-GD2 monoclonal antibody, clone 14.2Ga (Merck) at a concentration of 10 µg/mL, which was previously shown to yield a maximum lysis effect at these conditions (25). In experiments with CD59 blocking, excess of Fab fragment (10 µg/mL) generated from MEM43 mAb against CD59 (ImmunoPure Fab preparation kit, Perbio Science UK Ltd.) was preincubated with the cells for 30 min at 37°C. NHS was diluted as appropriate in RPMI 1640 and added to cells. The lysis assay was carried out using Colorimetric Cytotoxicity assay kit (Oxford Biomedical Research) that measures the release of lactate dehydrogenase (LDH) by the cells. Spontaneous release was assessed by incubation without mAb and with heat-inactivated NHS (15 min at 56°C). All experiments were performed in triplicate for each condition. The percentage of lysed cells was calculated using the following formula:
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The experiment was replicated twice and data were analyzed by Student's t test.
| Results |
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3-fold. These data show the importance of the additional 35-bp sequence between the –35 and –70 promoter constructs (Fig. 1C) for elevated expression of the CD59 gene in neuroblastoma. We next analyzed the 35-bp positive regulatory sequence in the CD59 promoter for potential binding to transcription factors. Using MatInspector (Genomatix Software GmbH), we identified several transcriptional activators (e.g., Sp1, AP2, CPBP, PLAG1) that may bind to the positive regulatory sequence (Table 1 ). However, we also found putative binding sites for the transcriptional suppressors REST and ZBP-89. It is likely that interplay between at least some of these potential negative and positive regulators will determine the expression status of the CD59 gene.
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90% (Fig. 2D). Knockdown of REST resulted in a 7-fold increase in expression of CD59 mRNA in IMR32 cells that predominantly express full-length REST (Fig. 2D). In contrast, knocking down truncated REST in Kelly cells did not affect CD59 mRNA expression. In light of the fact that neuron-specific splicing resulting in expression of truncated REST is also found in mouse neuroblastoma (18), we next analyzed the promoter sequence of mouse Cd59 for potential REST binding sites. In mice, Cd59 is duplicated and the two genes are designated Cd59a and Cd59b. However, expression of Cd59b is testis restricted and associated with reproduction rather than protection from complement attack (29, 30). Within the 2,000-bp promoter sequence of the Cd59a gene (Supplementary Fig. S1, available online), the gene relevant for protection from complement, we identified two potential REST binding sites. A detailed in silico analysis of the more proximal site showed that it overlaps or resides in the vicinity of potential binding sites for transcriptional activators such as signal transducers and activators of transcription 1 (STAT1), STAT3, Yin-yang 1, GA binding protein, LXRβ/retinoid X receptor, etc. (Supplementary Table S1), suggesting that up-modulation of CD59 in neuroblastomas by expression of alternatively spliced truncated REST isoform is an evolutionarily conserved event.
Design of REST-derived peptides for suppression of CD59 expression. Our next step was to design peptides that can suppress expression of CD59 in neuroblastoma. Based on our observation that only the full-length REST binds within the 35-bp responsive element to suppress expression of CD59, and on previously characterized roles of REST domains (31), we designed two constructs expressing REST-derived peptides predicted to bind to the CD59 promoter and suppress expression of the gene. One of the peptides, named REST58, comprises domain 5, which is responsible for nuclear localization, and domains 6, 7, and 8 (Fig. 3A
) that are essential for DNA binding. In the second peptide, named REST68, domain 5 has been replaced by the classic NLS (32). We transfected these two expression constructs into IMR32 and Kelly cells and investigated their effects on the expression of CD59. A conventional RT-PCR (Fig. 3A) clearly showed that both peptides had considerable suppressive effect on CD59 expression in Kelly cells lacking the full-length REST; however, the peptides had no effect in IMR32 cells expressing mainly the full-length protein. We further clarified this issue by quantifying the effect of REST-derived peptides using real-time QPCR. In Kelly cells, REST58 lowered expression of CD59 mRNA by 2.5-fold, whereas transfection with REST68 constructs yielded a 4-fold suppression (Fig. 3B). In IMR32 cells, there was a nonsignificant trend toward reduction of CD59 mRNA expression by the two constructs. The effect of REST58 and REST68 on expression of CD59 at protein level (Fig. 3C) was similar to that observed at mRNA level, with a reduction in expression in Kelly cells of
2-fold and 2.5-fold, respectively. We next studied the effect of REST68 on CD59 expression in several other neuroblastoma cell lines (Fig. 3D). In all of them, CD59 expression on the cell surface was reduced within 96 h of the transfection by at least 2-fold. In NMB7 cells, this effect was significantly greater and we observed almost a complete suppression of CD59 by the REST peptide (10% of that in cells transfected with an empty vector).
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5-fold (Fig. 4A
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20% (Fig. 4B). However, this reduction in binding was not sufficient to contribute to a significant decrease in CD59 expression at either RNA (data not shown) or protein level (Fig. 4C). We did not investigate further the effect of this peptide on sensitivity of neuroblastoma to complement lysis.
REST-derived peptides sensitize neuroblastoma cells to killing by therapeutic mAb and complement. Finally, we tested the effect of the constructs modulating expression of CD59 on complement-mediated cytolysis triggered by anti-GD2 mAb used in neuroblastoma immunotherapy (Fig. 5
). Lysis assays were performed using different concentrations of human serum as a source of complement. Maximum lysis achieved for Kelly cells with no modulation of expression of CD59 was
55%. However, cells transfected with the REST68 expression plasmid were more susceptible to complement-dependent killing at all serum doses, and
80% were lysed at maximum. To confirm that reduced expression of CD59 was responsible for the observed sensitization to complement-dependent cytolysis, lytic susceptibility was assessed in Kelly cells transfected either with REST68-expressing construct or empty vector, in which CD59 was first blocked by Fab fragment prepared from MEM43 antibody that suppresses the protective role of CD59 in complement-mediated lysis (34). After blocking CD59, lytic susceptibility was increased and was similar for cells transfected with REST68 or empty vector, confirming that increased susceptibility of REST68-treated cells to complement lysis was a result of decreased CD59 expression. Heat-inactivated normal human serum did not cause specific lysis of Kelly (data not shown).
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30% higher maximum lysis compared with those transfected with an empty vector. In NMB7, the maximum lysis achieved in REST68-transfected populations was
95% (35% higher than in empty vector transfected control). This almost complete complement killing was most likely a result of the very efficient suppression of CD59 in this cell line and of the fact that NMB7 do not express CD55 and CD46 at levels detectable by Western blotting (35). | Discussion |
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In this study, we investigated in more detail the molecular mechanisms causing elevated expression of CD59 in neuroblastoma. Here, we identified REST protein as a major player in regulating expression of the CD59 gene (Fig. 2). Full-length REST, a transcriptional suppressor, binds to a positive responsive element within the CD59 gene promoter (Figs. 1 and 2). This responsive element, when not occupied by REST, recruits several transcriptional activators in living cells, such as Sp1, AP2, and CPBP (Table 1; Fig. 4), which up-regulate expression of CD59. Therefore, the balance between these two processes is essential for maintaining normal expression level of CD59. However, primary neuroblastoma tumors and established neuroblastoma cell lines (Fig. 2; ref. 18) express a truncated REST isoform that lacks DNA-binding activity in both cell-free systems (Fig. 2) and living cells (Fig. 4). This results in overexpression of CD59 as a consequence of unregulated binding of transcriptional activators. It was previously shown that inhibition of Sp1 by REST is required for the silencing of its target genes (40). Our study confirms this finding and further extends the list of the transcriptional activators inhibited by REST to include AP2 and CPBP (Fig. 4).
To manipulate CD59 expression in tumor cells expressing truncated REST, we designed two peptides derived from the DNA-binding domains of REST, which we named REST58 and REST68. REST58 is delivered to the nucleus via a REST-specific receptor (41) recognized by the zinc finger domain 5 of the protein. The REST-specific receptor has been identified only recently and its efficacy in delivering REST to the nucleus has not been investigated. In the second peptide, REST68, we replaced domain 5 with the classic NLS (PKKKRKV) delivering proteins to the nucleus via importin
1 (32). We reasoned that such a substitution might result in a more efficient nuclear import because importin
1 is abundantly expressed in tumors (42), which should ensure a high efficiency of peptide nuclear delivery and a greater suppressive effect. The data we obtained here (Fig. 3) confirmed our expectations. However, the weaker suppressive effect of REST58 we observed on expression of CD59 might be also a result of competition between REST58 and the relatively highly expressed truncated REST for the REST receptor.
REST68 inhibited expression of CD59 at the mRNA level by 4-fold and at the protein level by 2.5-fold (Fig. 3). Taking into account the fact that cell-bound CD59 turns over relatively rapidly (43) and that transfected Kelly cells were cultured for up to 2 weeks before studying the effect of REST68, the observed discrepancy between mRNA and protein change might be a result of compensatory mechanism(s) that affects either the stability or the expression of CD59 at protein level. We have also tried to inhibit expression of CD59 by modulating binding of p53 to the gene promoter (Fig. 4; ref. 14). However, the p53-derived peptide we tested did not cause any significant effect either alone or in combination with REST68.
Presenting symptoms of neuroblastoma are varied and often vague; hence, some 65% of neuroblastomas are not diagnosed until the disease is widespread. Treatment choices are therefore limited. Intensive chemotherapy is often successful in achieving disease remission; however, relapses are common and difficult to treat, making neuroblastoma one of the most lethal of all childhood cancers (44). Immunotherapy with humanized monoclonal anti-GD2 antibodies has showed promise (reviewed in ref. 45); however, as with chemotherapy, relapse and resistance are common. Recent studies have shown that resistance of neuroblastoma to both chemotherapy and immunotherapy is in part due to the development of enhanced resistance to complement killing caused by up-regulation of expression of CD59 on the tumor (14, 37). Antibody blockade of mCReg increased the effectiveness of immunotherapy in a number of tumors—chronic lymphocytic leukemia B-cells (11), xenograft models of human neuroblastoma (37), and lymphoma cells (12). However, due to the ubiquitous expression of mCReg, the application of this strategy remains limited. The REST68 peptide described here was a potent sensitizer of neuroblastoma cells to complement-mediated killing triggered by anti-GD2 therapeutic antibody (Fig. 5). Targeted delivery of peptides, either as an active component or as a prodrug, has been achieved in other contexts; we believe that REST68 peptide would be a powerful adjuvant to therapeutic mAbs, improving the outcome from neuroblastoma treatment. Others have targeted complement activation to tumor cells to enhance clearance of prostate tumors (46). Combining suppression of mCReg and targeted complement activation would likely result in a very high level of immunoclearance of tumors.
Further to the delivery strategy for REST68 to tumors, a key finding in this study showed that the peptide did not affect expression of CD59 in cells predominantly expressing the full-length REST (Fig. 3). Endogenously expressed REST has already down-modulated the expression of CD59 and a further introduction of REST68 does not show a significant effect. These findings led us to suggest that REST68 would not significantly change the expression of other REST-controlled genes in normal cells. Although a detailed study on this matter has yet to be carried out, we emphasize that the selective effect of REST68 on neuroblastoma cells is a critical feature that may remove the need to target this therapeutic peptide to tumors. Expression of the truncated isoform of REST, although not reported in normal cells, is also described in small-cell lung carcinoma (19, 24) and colorectal cancer (17). This new approach to sensitizing tumor cells to complement attack, modeled here in neuroblastoma, may therefore be of broader relevance to tumor immunotherapy.
| Disclosure of Potential Conflicts of Interest |
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| Acknowledgments |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
We thank Dr. Peter Giles (School of Medicine, Cardiff University, Cardiff, United Kingdom) for the in silico analysis of mouse Cd59a promoter and Prof. David Kipling (School of Medicine, Cardiff University, Cardiff, United Kingdom) for critical reading and fruitful discussion of this article.
| Footnotes |
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Received 12/26/07. Revised 4/ 9/08. Accepted 5/ 8/08.
| References |
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with nuclear localization sequences. J Biol Chem 1997;272:4310–5.This article has been cited by other articles:
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S. M. Mangsbo, J. Sanchez, K. Anger, J. D. Lambris, K. N. Ekdahl, A. S. Loskog, B. Nilsson, and T. H. Totterman Complement Activation by CpG in a Human Whole Blood Loop System: Mechanisms and Immunomodulatory Effects J. Immunol., November 15, 2009; 183(10): 6724 - 6732. [Abstract] [Full Text] [PDF] |
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