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Molecular Biology, Pathobiology, and Genetics |
Departments of 1 Biomedical Sciences and 2 Molecular Biology and Genetics, Cornell University, Ithaca, New York and 3 Rodent Histopathology Core, Harvard Medical School, Boston, Massachusetts
Requests for reprints: Robert S. Weiss, Department of Biomedical Sciences, Cornell University, T2006C Veterinary Research Tower, Ithaca, NY 14853. Phone: 607-253-4443; Fax: 607-253-4212; E-mail: rsw26{at}cornell.edu.
| Abstract |
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| Introduction |
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Because intracellular nucleotide concentrations have a major effect on DNA replication fidelity (5), RNR enzyme activity is tightly controlled by several regulatory mechanisms. During an unperturbed cell cycle, the transcription of Rrm1 and Rrm2 is undetectable in G0-G1 phase and reaches maximal levels in S-phase cells (6–8). However, owing to its long half-life, Rrm1 protein levels are nearly constant throughout the cell cycle and in excess relative to the R2 subunit. RNR enzyme activity is therefore determined in part by R2 protein levels. Rrm2 protein is absent during G0-G1 phase, peaks in S phase, and then falls in mitosis after ubiquitination by the anaphase promoting complex (8–10). Consistent with a need for nucleotides during DNA repair, DNA damage and replication stress induce RNR expression in both yeast and mammalian cells in a manner dependent on DNA damage checkpoint pathways (11, 12). Whereas mammalian Rrm1 and Rrm2 proteins are cytoplasmic (13), p53R2 localizes to the nucleus in genotoxin-treated cells (2, 3), which may facilitate the localized production of nucleotides at DNA damage sites.
RNR enzyme activity is also controlled by two allosteric sites in the R1 subunit. A specificity site regulates the relative cellular concentration of each of the four dNTPs by influencing substrate choice, whereas an activity site regulates the total dNTP pool size by monitoring the ATP/dATP ratio. Analysis of the mutant Rrm1-D57N, which is insensitive to feedback inhibition by dATP due to a mutation in the activity site, indicates that loss of RNR allosteric control results in a mutator phenotype in both yeast and mammalian cells (14–16).
Although RNR is a major determinant of genomic integrity, the consequences of RNR deregulation in animals are unknown. We generated transgenic mice that overexpress Rrm1, Rrm2, or p53R2 and found that overexpression of either small RNR subunit induced spontaneous lung neoplasms and was mutagenic in cultured cells. Defects in DNA mismatch repair (MMR) synergistically increased RNR-induced mutagenesis and carcinogenesis, and activating mutations in the proto-oncogene K-ras were identified in lung neoplasms from Rrm2 and p53R2 transgenic mice. These results identify mutagenic and carcinogenic effects of RNR deregulation in vivo.
| Materials and Methods |
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Transgenic mice. Transgenic mice were generated in the FVB/N strain background, as described in Supplementary Materials and Methods. For analysis of tumor development, cohorts of mice were aged until moribund for 15 to 21 mo. Msh6-null mice (17) were obtained from the Mouse Models of Human Cancers Consortium, bred with Rrm2Tg or p53R2Tg mice, and aged until moribund for 6 or 17 mo. All mice were maintained identically, following guidelines approved by the Cornell University Institutional Laboratory Animal Use and Care Committee. Pathologic assessments were performed as described in Supplementary Materials and Methods.
Northern blot analysis. Total RNA was isolated from mouse cells and tissues using RNA STAT-60 (Tel-Test, Inc.), resolved on an agarose/formaldehyde gel, and hybridized with probes specific to mouse Rrm1, Rrm2, p53R2, or Gapdh.
Western blot analysis. Cell or tissue protein extracts were prepared as described in Supplementary Materials and Methods. The antibodies used were mouse anti-R1 (Bio Med Tek), goat anti-R2 (Santa Cruz Biotechnology), rabbit anti-p53R2 (ProSci-inc), and β-actin (Sigma).
Immunohistochemistry. Immunohistochemical detection of pro-SP-C and CC10 was performed on 5 µm paraffin sections using the Vectastain ABC kit (Vector Laboratories) as described in Supplementary Materials and Methods.
Generation of RNR overexpressing 3T3 cell pools. Pools of mouse NIH/3T3 fibroblasts that overexpress individual RNR genes were generated as described in Supplementary Materials and Methods.
Determination of mutation rates in mammalian and yeast cells. Mutation frequencies were determined in 3T3 cell pools and yeast strains by Hprt mutation and canavanine resistance assays, respectively, as described in Supplementary Materials and Methods.
Big Blue mutation rate assay. Big Blue C57Bl/6 mice, hemizygous for the
shuttle vector, were obtained from Stratagene and bred with Rrm1Tg, Rrm2Tg, p53R2Tg, or Msh6–/–RNRTg mice. Mutation frequency in the resulting animals was determined as described in Supplementary Materials and Methods.
Sequencing of K-ras exons 1 and 2. DNA was prepared from tumor specimens isolated by laser microdissection, and K-ras exons 1 and 2 were PCR amplified and sequenced as described in Supplementary Materials and Methods.
| Results |
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Endogenous and transgenic Rrm1, Rrm2, and p53R2 mRNA expression was tested in a variety of organs by Northern blot analysis. The endogenous Rrm1 and Rrm2 genes were coordinately expressed, with highest expression in proliferative tissues, such as testis and thymus (Fig. 1A, left ). Expression of the endogenous p53R2 gene was undetectable in all tested WT FVB tissues. Importantly, Rrm2Tg and p53R2Tg mice showed high-level transgene expression in all tissues, with overexpression being highest in muscle (Fig. 1A, right). Rrm1 overexpression was only observed in muscle and testis of Rrm1Tg mice. For technical reasons, the Rrm1 transgene included additional noncoding cDNA sequences and was microinjected as a linearized construct without removal of plasmid backbone sequences, which may contribute to the relatively poor transgene expression.
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Overexpression of the small RNR subunit promotes lung carcinogenesis. To identify spontaneous neoplasms and other abnormalities in RNR transgenic mice, we established a cohort consisting of 52 Rrm1Tg, 75 Rrm2Tg, and 81 p53R2Tg mice, as well as 49 transgene-negative control mice and aged them until they exhibited clinical illness. Notably, a significantly increased frequency of lung neoplasms was observed in Rrm2Tg and p53R2Tg mice (Table 1
). Seventy-two percent of Rrm2Tg and 74% of p53R2Tg animals developed spontaneous lung neoplasms. By contrast, 31% of transgene-negative controls developed lung neoplasms, a frequency consistent with the reported incidence for aged WT FVB mice (18). The lung neoplasm incidence in Rrm1Tg mice was 31%, identical to that of the control animals and significantly less than that of Rrm2Tg or p53R2Tg mice (
2 analysis, P < 0.05). Lung neoplasms were observed in multiple independent Rrm2Tg and p53R2Tg lines, indicating that transgene integration site effects did not account for the neoplastic phenotype. Signs of clinical illness arose after a latency of 16 to 18 months for all genotypes. No differences in lung neoplasm incidence between sexes were noted for any of the transgenic lines. The frequency of epithelial hyperplasia of alveoli also was increased in p53R2Tg and especially Rrm2Tg mice. Other neoplasms, including papilloma, histiocytic sarcoma, mammary carcinoma, and lymphoblastic lymphoma, were observed in 13% of Rrm1Tg, 12% of Rrm2Tg, and 12% of p53R2Tg mice, but only 2% of transgene-negative mice.
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To confirm a causative role for RNR overexpression in lung carcinogenesis, we analyzed the expression of Rrm1, Rrm2, and p53R2 in lung neoplasms by Northern (Fig. 2B) and Western (Fig. 1B) blotting. Lung neoplasms from Rrm2Tg and p53R2Tg animals showed prominent RNR overexpression, consistent with a causative role for RNR in the genesis of these lung lesions. By contrast, lung neoplasms from Rrm1Tg mice did not display high-level transgene expression, providing further evidence that carcinogenesis in Rrm2Tg and p53R2Tg mice is highly specific. Overall, these data identify a novel oncogenic activity for the small RNR subunit.
Increased mutation frequency after RNR overexpression in cultured 3T3 cells. We hypothesized that RNR overexpression induced lung neoplasms through a mutagenic mechanism, because defects in RNR allosteric control result in increased mutation frequencies in yeast and mammalian cells (14, 16). To determine if RNR overexpression was similarly mutagenic, we generated Rrm1, Rrm2, or p53R2 overexpressing NIH/3T3 cell pools using the same expression constructs as used to generate the transgenic mice. Overexpression of individual RNR genes in these cell pools was confirmed by Northern and Western blotting (Fig. 3A and B ).
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To determine the nature of the mutations conferring 6-thioguanine resistance, we sequenced the Hprt gene from individual colonies (20). Interestingly, four of seven Hprt mutations from the Rrm2 overexpressing cell pool shown in Fig. 3C were G
T substitutions (Supplementary Table S1), which are relatively rare among reported spontaneous Hprt mutations (21). Similar results were obtained in a separate experiment with an independent Rrm2 overexpressing cell pool (Supplementary Table S1). One of six mutations from the p53R2 overexpressing cell pool shown in Fig. 3C also was a G
T mutation, but no G
T mutations were observed among six 6-thioguanine resistant clones from a second independent experiment (Supplementary Table S1). Collectively, the results indicate that overexpression of the small RNR subunit causes a mutator phenotype.
Combined defects in RNR regulation and MMR result in synergistic increases in mutagenesis and carcinogenesis. To further evaluate a role for mutagenesis in RNR-induced lung carcinogenesis, we investigated whether combining RNR deregulation with a defect in MMR, the repair system that suppresses mutation accumulation, would cause a synergistic increase in mutagenesis and carcinogenesis. In eukaryotic cells, a complex of Msh2-Msh6 is responsible for recognizing base-base mispairs and single-base insertion/deletions, whereas a Msh2-Msh3 complex detects larger insertion/deletion loops (22). We first tested this hypothesis in Saccharomyces cerevisiae by measuring the mutation rate by canavanine resistance assay in strains with deregulated RNR activity and mutations in MMR genes. To deregulate budding yeast RNR, we used the rnr1-D57N mutant, in which a single–amino acid change in the R1 activity site makes the enzyme insensitive to feedback inhibition by dATP (16). Consistent with published reports (14), rnr1-D57N yeast exhibited a 3.4-fold increase in mutation rate relative to the WT strain, which had a mutation rate of 1.5 x 10–7 (Fig. 4A
). MMR-defective strains also displayed elevated mutation rates (msh2
: 28.4-fold; msh3
: 2.9-fold; msh6
: 9.8-fold), similar to previous reports (23). Notably, rnr1-D57N msh2
and rnr1-D57N msh6
double mutants displayed approximately multiplicative increases in mutation rate relative to the single mutants (61.4-fold and 23.8-fold, respectively). Multiplicative increases in mutagenesis are seen for mutations that affect factors acting in series in a common pathway (24), suggesting that the Msh2-Msh6 complex corrects DNA mismatches induced by RNR deregulation. By contrast, combining rnr1-D57N with msh3
resulted in only an additive increase in mutation rate (rnr1-D57N msh3
: 3.9-fold). The spectrum of mutations arising in WT nr1-D57N, msh2
, and msh6
strains was consistent with previous publications (14, 23, 25) and included primarily base substitutions, as well as frameshift mutations for msh2
(Supplementary Table S2). The frequency of frameshift mutations involving single nucleotide insertions or deletions was substantially increased in rnr1-D57N msh2
and rnr1-D57N msh6
strains relative to the single mutants.
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The survival rate for Msh6–/–Rrm2Tg and transgene negative Msh6–/– mice was not significantly different (P = 0.975; log-rank test), suggesting that Rrm2 overexpression, unlike p53R2 overexpression, did not enhance lymphomagenesis (Fig. 4B). However, that 90% of Msh6–/–Rrm2Tg mice had developed lung neoplasms despite their shortened life span of
10 months was suggestive of a synergistic genetic interaction (Supplementary Table S3). To directly test whether lung carcinogenesis was accelerated in Msh6–/–Rrm2Tg mice, we sacrificed a cohort of Msh6–/–Rrm2Tg mice and littermate controls at 6 months of age. Three of 18 Msh6+/+Rrm2Tg mice and 3 of 17 Msh6+/–Rrm2Tg mice had developed lung neoplasms by 6 months, whereas no lung neoplasms were observed in transgene-negative Msh6+/+ or Msh6+/– littermates (Table 2
). Lung neoplasms were also observed in 2 of 13 Msh6–/– mice. Msh6 deficiency strongly accelerated Rrm2-induced lung carcinogenesis, as 13 of 13 Msh6–/–Rrm2Tg mice developed lung neoplasms by 6 months of age, with nine of these mice carrying multiple lung neoplasms.
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phage cII locus in lung tissue from 3-month-old RNRTg mice, with or without Msh6 deficiency, using the Big Blue transgene system (26). There was no difference in mutation frequency in RNR transgenic mice compared with WT mice (Fig. 4C and Supplementary Table S4), possibly because the Big Blue system is relatively insensitive due to a high background mutation frequency. However, the mutation frequency in Msh6–/–Rrm2Tg (55.2 ± 20.9 x 10–5) and Msh6–/–p53R2Tg (54.0 ± 15.4 x 10–5) lung tissues was consistently higher than that in Msh6–/– lung tissue (31.1 ± 10.4 x 10–5), although these differences were not statistically significant. By contrast, the mutation frequency was similar in spleen tissue from Msh6–/–Rrm2Tg (52.0 ± 20.1 x 10–5) and Msh6–/– (50.5 ± 16.3 x 10–5) mice, but slightly elevated in Msh6–/–p53R2Tg (63.7 ± 10.7 x 10–5) animals (Fig. 4D and Supplementary Table S5). Together, these results indicate that MMR deficiency synergizes with RNR overexpression in a tissue-specific manner to increase mutagenesis and carcinogenesis. RNR-induced lung neoplasms display a unique signature of K-ras activating mutations. A mutagenic mechanism implies that RNR overexpression triggers additional genetic alterations while promoting tumor development. Because mutations in codons 12 and 61 of the K-ras proto-oncogene are often observed in human and mouse lung cancers (27, 28), we examined the frequency of K-ras mutations in microdissected lung neoplasms from the RNR cohort. 100% of Rrm2-induced lung neoplasms and 79% of p53R2-induced lung neoplasms carried K-ras activating mutations (Supplementary Table S6), indicating that RNR-induced lung carcinogenesis frequently involves K-ras activating mutations. 56% and 100% of the rare lung neoplasms from transgene-negative control and Rrm1Tg mice, respectively, also had K-ras mutations.
Sequence analysis revealed that the lung neoplasms from Rrm2Tg and p53R2Tg mice exhibited distinct mutation spectra relative to those from transgene-negative and Rrm1Tg mice (Supplementary Table S7). In particular, 50% of the K-ras codon 12 mutations from Rrm2-induced lung neoplasms were G
T transversions (GGT
GTT, G12V), as were 30% of those from p53R2-induced lung neoplasms. By contrast, lung neoplasms from transgene-negative and Rrm1Tg mice showed exclusively G
A transitions (GGT
GAT, G12D) in K-ras codon 12. We conclude that K-ras activating mutations, common events in lung carcinogenesis, are central to Rrm2-induced and p53R2-induced lung carcinogenesis and arise through a mechanism that seems distinct from that underlying spontaneous lung tumor development in WT animals.
| Discussion |
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In contrast to Rrm2Tg and p53R2Tg mice, Rrm1Tg mice did not show increased lung carcinogenesis. This might be due to the relatively limited overexpression of the Rrm1 transgene or the fact that the R2 subunit is the limiting component of the enzyme (7, 36). However, Rrm1 shows tumor suppressor activity both in cultured cells and human lung cancer patients (37–39). Consistent with our findings, Rrm1 overexpression in another mouse model also did not result in any overt spontaneous phenotypes and instead was reported to suppress chemical carcinogenesis in the lung (40). Thus, lung tumor induction might be specific to the small RNR subunit and independent of RNR enzyme activity.
We determined that RNR-induced lung tumorigenesis proceeded through a mutagenic mechanism. Overexpression of Rrm2 or p53R2, but not Rrm1, in 3T3 cells resulted in a significant increase in mutation frequency. Additional experiments in budding yeast indicated that MMR normally corrects base mispairs that arise due to RNR deregulation, as multiplicative increases in mutation rate were observed when the allosteric site mutant rnr1-D57N was combined with MMR gene mutations. A similar genetic interaction between RNR and MMR was observed in mice. Msh6-null mice develop primarily lymphoma (17), and p53R2 overexpression cooperated with Msh6-deficiency to cause an earlier onset of lymphomagenesis and shortened life span in Msh6–/–p53R2Tg mice compared with Msh6–/– controls. We also observed that Msh6 deficiency strongly accelerated Rrm2-induced lung carcinogenesis, with 100% of Msh6–/–Rrm2Tg mice developing lung neoplasms by 6 months of age. The accelerated lung carcinogenesis in Msh6–/–Rrm2Tg mice was associated with increased mutation frequency in lung tissue, whereas the accelerated lymphomagenesis in Msh6–/–p53R2Tg mice correlated with a modestly elevated mutation frequency in spleen tissue. The synergy observed between these pathways raises the possibility that aberrant RNR expression may be selected for in MMR-deficient cancers.
A key question arising from this study is the molecular basis for mutagenesis and lung tumor induction by Rrm2 and p53R2 overexpression. One possibility is that increased RNR expression leads to dNTP level alterations that impair replication fidelity and trigger mutations in growth regulatory genes. Abnormal nucleotide levels result in increased base misinsertion during DNA replication, as well as decreased proof-reading due to enhanced polymerization rates (5). Consistent with the notion that regulators of nucleotide biosynthesis can influence cell transformation, overexpression of another enzyme involved in dNTP biosynthesis, thymidylate synthase, transforms cultured cells (41) and promotes tumor formation in transgenic mice (42).
Alternatively, carcinogenesis due to R2 subunit overexpression could be independent of nucleotide metabolism. One possibility is that free radical production by Rrm2 and p53R2 contributes to cell transformation. During each catalytic cycle the small RNR subunit generates a tyrosyl radical that normally is transferred to the active site in Rrm1 for use in NDP reduction (1). R2 protein overexpression might lead to increased radical generation and the formation of reactive oxygen species (ROS), which cause oxidative DNA damage and are mutagenic. ROS also have mitogenic effects and can play a direct role in neoplastic transformation (43). Notably, human RRM2 protein generates ROS in vitro, although recombinant p53R2 was reported in the same study to have antioxidant activity, despite the fact that both RRM2 and p53R2 generate tyrosyl-free radicals (44). G
T transversions, a signature of oxidative DNA damage, were detected at K-Ras codon 12 in lung neoplasms from Rrm2Tg and p53R2Tg mice, and also at the Hprt locus in Rrm2 and p53R2 overexpressing 3T3 cells. Because MMR corrects mismatches arising from both replication errors (22) and oxidative DNA damage (45), the multiplicative increases in mutagenesis and carcinogenesis observed when combining RNR overexpression with MMR deficiency are compatible with both dNTP level alterations and increased ROS production as possible mechanisms of action.
The possibility that R2 subunit overexpression induces mutagenesis and tumorigenesis through excessive free radical production may account for the observation that RNR transgenic mice, despite broad RNR overexpression, develop lung but not other neoplasms at high frequency. The lung is an oxygen-rich environment with a high basal level of ROS (46) and thus may be more susceptible to increased free radical production. Alternatively, it could be that the mutational targets of RNR dictate the tissue specificity. Indeed, activated K-ras preferentially induces lung neoplasms in mice (47). Other more trivial explanations for the lung-specific carcinogenesis, such as subtle transgene expression level differences or varying DNA repair efficiencies among tissues, also cannot be ruled out.
Although Rrm2 and p53R2 encode related R2 proteins, they did not give identical results in our experiments. Whereas overexpression of either was capable of inducing lung neoplasms, Rrm2 overexpression elicited larger and more malignant tumors. p53R2 overexpression, on the other hand, significantly accelerated lymphomagenesis in Msh6-null mice, suggesting a broad effect of p53R2 overexpression. Rrm2 also was more mutagenic than p53R2 in cultured cells and induced a greater proportion of G
T transversions in both the Hprt and K-ras genes. One possible explanation for the partially distinct phenotypes associated with Rrm2 and p53R2 is that both dNTP alterations and ROS production can contribute to neoplastic transformation and that these activities differ between Rrm2 and p53R2. The distinct subcellular localizations of Rrm2 and p53R2 (2, 3, 13) could contribute to such differing effects on dNTP biosynthesis or ROS production.
Mouse models hold great promise for facilitating the development of diagnostic tools, prognostic markers, and therapeutics for lung cancer, the leading cause of cancer death world-wide. Like human lung adenocarcinomas (48), the RNR-induced lung neoplasms expressed SP-C, a marker of type II alveolar cells. Furthermore, RNR-induced lung neoplasms arose with moderate latency in a stochastic process associated with an elevated mutation rate, suggesting that this may be a particularly authentic model for lung cancer. A mutagenic mechanism for RNR-induced lung carcinogenesis implies that several genetic alterations are required for lung carcinogenesis. Consistent with this model, we observed activating K-ras mutations at very high frequency in RNR-induced lung neoplasms. K-ras has been reported to be mutated in 90% of mouse lung neoplasms and as many as 25% of human lung adenocarcinomas (27, 28). That G
T transversions in K-ras codon 12 were detected in RNR-induced lung neoplasms further validates this lung cancer model, as G
T transversions are the most common mutations at K-ras codon 12 in human lung cancers and correlate with a poorer prognosis (49, 50). Continued use of the RNR lung cancer model has great potential for revealing additional genetic alterations that contribute to lung tumor initiation and progression.
| Acknowledgments |
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The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
We thank Dr. Phil Leder for his support of this project, Dr. Lars Thelander for Rrm1 and Rrm2 cDNA clones, Dr. Andrei Chabes for yeast strains 4069-4C and 4069-8C, Charlene Manning and Dr. Jianrong Lu for assistance with plasmid cloning, Nick Fuda for contributions to the yeast mutation rate analyses, Anne Harrington for performing transgene microinjections, and Dr. Ruth Collins and Dr. Sylvia Lee for helpful discussions.
| Footnotes |
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Current address for J.A. Surtees: Department of Biochemistry, School of Medicine and Biomedical Sciences, State University of New York at Buffalo, Buffalo, NY.
Received 10/15/07. Revised 1/14/08. Accepted 2/13/08.
| References |
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transgene target. Proc Natl Acad Sci U S A 1996;93:9073–8.
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