Table 4.

Cell cycle genes up- or down-regulated in HPV+ cancers versus HPV cancers

Probe set ID *Gene titleGene symbolt statistic
205767_atEpiregulinEREG−3.47
209792_s_atKallikrein 10KLK10−4.25
208711_s_atCyclin D1CCND1−5.43
208712_atCyclin D2CCND2−4.48
1553869_atSestrin 3SESN3−3.39
205899_atCyclin A1CCNA1−4.06
235683_atSestrin 3SESN3−4.05
207039_atCyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4)CDKN2A7.09
206546_atSynaptonemal complex protein 2SYCP27.36
204159_atCyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)CDKN2C5.73
204510_atCDC7 cell division cycle 7CDC76.51
206316_s_atKinetochore associated 1KNTC16.28
205085_atOrigin recognition complex, subunit 1-likeORC1L4.96
201746_atTumor protein p53TP533.57
224320_s_atMCM8 minichromosome maintenance deficient 8MCM85.61
213204_atp53-associated parkin-like cytoplasmic proteinPARC5.90
222962_s_atMCM10 minichromosome maintenance deficient 10MCM102.74
201555_atMCM3 minichromosome maintenance deficient 3MCM35.95
201930_atMCM6 minichromosome maintenance deficient 6MCM65.56
244550_atTranscription factor Dp-1TFDP13.00
228361_atE2F transcription factor 2E2F24.94
204121_atGrowth arrest and DNA-damage-inducible, γGADD45G2.16
225297_atCoiled-coil domain containing 5 (spindle associated)CCDC53.42
204457_s_atGrowth arrest-specific 1GAS12.17
228033_atE2F transcription factor 7E2F74.39
204252_atCyclin-dependent kinase 2CDK23.77
210028_s_atOrigin recognition complex, subunit 3-like (yeast)ORC3L4.12
209408_atKinesin family member 2CKIF2C5.52
209172_s_atCentromere protein F, 350/400ka (mitosin)CENPF4.55
219588_s_atLeucine zipper protein 5LUZP54.86
203693_s_atE2F transcription factor 3E2F34.05
218663_atChromosome condensation protein GHCAP-G3.55
202107_s_atMCM2 minichromosome maintenance deficient 2, mitotinMCM24.37
208795_s_atMCM7 minichromosome maintenance deficient 7MCM74.06
201664_atSMC4 structural maintenance of chromosomes 4-like 1SMC4L14.44
201202_atProliferating cell nuclear antigenPCNA5.12
203213_atCell division cycle 2, G1 to S and G2 to MCDC23.27
204240_s_atSMC2 structural maintenance of chromosomes 2-like 1SMC2L11.73
205034_atCyclin E2CCNE23.59
205393_s_atCHK1 checkpoint homologueCHEK11.05
214710_s_atCyclin B1CCNB11.20
203755_atBUB1 budding uninhibited by benzimidazoles 1 homologue βBUB1B2.77
  • * In order as shown in Fig. 3A.