Table 1.

Summary of 13 conditioning regions individually studied in conditional genome scans

Conditioning SNPConditioning regionSNP-region proximityChrMinor alleleMAFOR (95% CI)P
rs4962416CTBP2Intron10C0.251.18 (1.11, 1.26)1.05E-07
rs1571801DAB2IPIntron9A0.261.10 (1.04, 1.18)2.01E-03
rs4857841EEFSECIntron3A0.281.15 (1.08, 1.22)6.79E-06
rs17432497EHBP1Intron2G0.181.10 (1.03, 1.18)6.49E-03
rs4430796HNF1BIntron17G0.480.82 (0.77, 0.87)4.56E-12
rs10486567JAZF1Intron7A0.240.83 (0.78, 0.89)4.89E-08
rs2735839KLK2, KLK3Near19A0.140.92 (0.85, 1.00)5.38E-02
rs10993994MSMBNear10T0.381.23 (1.16, 1.30)7.47E-13
rs10896449MYEOVNear11A0.500.84 (0.80, 0.89)8.30E-10
rs42423828q24, Region 1Within8A0.101.48 (1.36, 1.61)<1.0E-15
rs78410608q24, Region 2Within8G0.201.21 (1.13, 1.30)1.08E-07
rs69832678q24, Region 3Within8T0.500.80 (0.76, 0.84)1.55E-15
rs6208618q24, Region 4Within8T0.370.90 (0.84, 0.95)5.62E-04

NOTE: Reported values are based on single-SNP analyses of CGEMS Stages I and II combined.

Abbreviations: Chr, chromosome; CI, confidence interval; MAF, minor allele frequency among controls in sample.