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The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research

Sheila M. Reynolds, Michael Miller, Phyliss Lee, Kalle Leinonen, Suzanne M. Paquette, Zack Rodebaugh, Abigail Hahn, David L. Gibbs, Joseph Slagel, William J. Longabaugh, Varsha Dhankani, Madelyn Reyes, Todd Pihl, Mark Backus, Matthew Bookman, Nicole Deflaux, Jonathan Bingham, David Pot and Ilya Shmulevich
Sheila M. Reynolds
1Institute for Systems Biology, Seattle, Washington.
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  • For correspondence: sreynolds@systemsbiology.org ilya.shmulevich@systemsbiology.org
Michael Miller
1Institute for Systems Biology, Seattle, Washington.
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Phyliss Lee
1Institute for Systems Biology, Seattle, Washington.
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Kalle Leinonen
1Institute for Systems Biology, Seattle, Washington.
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Suzanne M. Paquette
1Institute for Systems Biology, Seattle, Washington.
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Zack Rodebaugh
1Institute for Systems Biology, Seattle, Washington.
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Abigail Hahn
1Institute for Systems Biology, Seattle, Washington.
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David L. Gibbs
1Institute for Systems Biology, Seattle, Washington.
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Joseph Slagel
1Institute for Systems Biology, Seattle, Washington.
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William J. Longabaugh
1Institute for Systems Biology, Seattle, Washington.
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Varsha Dhankani
1Institute for Systems Biology, Seattle, Washington.
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Madelyn Reyes
2CSRA Inc., Falls Church, Virginia.
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Todd Pihl
2CSRA Inc., Falls Church, Virginia.
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Mark Backus
2CSRA Inc., Falls Church, Virginia.
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Matthew Bookman
3Google, Mountain View, California.
4Verily Life Sciences, South San Francisco, California.
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Nicole Deflaux
3Google, Mountain View, California.
4Verily Life Sciences, South San Francisco, California.
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Jonathan Bingham
3Google, Mountain View, California.
4Verily Life Sciences, South San Francisco, California.
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David Pot
2CSRA Inc., Falls Church, Virginia.
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Ilya Shmulevich
1Institute for Systems Biology, Seattle, Washington.
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  • For correspondence: sreynolds@systemsbiology.org ilya.shmulevich@systemsbiology.org
DOI: 10.1158/0008-5472.CAN-17-0617 Published November 2017
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    Figure 1.

    The ISB-CGC interactive web application and programmatic interfaces provide access to over 2 petabytes of data hosted in Google Cloud Storage and BigQuery. Users can explore and analyze hosted datasets, upload their own data, and deploy workloads on Compute Engine VMs using a combination of ISB-CGC and Google interfaces.

SUPPLEMENTARY MATERIALS

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    ISB-CGC tutorial. Supplementary Video S1

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Cancer Research: 77 (21)
November 2017
Volume 77, Issue 21
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The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research
Sheila M. Reynolds, Michael Miller, Phyliss Lee, Kalle Leinonen, Suzanne M. Paquette, Zack Rodebaugh, Abigail Hahn, David L. Gibbs, Joseph Slagel, William J. Longabaugh, Varsha Dhankani, Madelyn Reyes, Todd Pihl, Mark Backus, Matthew Bookman, Nicole Deflaux, Jonathan Bingham, David Pot and Ilya Shmulevich
Cancer Res November 1 2017 (77) (21) e7-e10; DOI: 10.1158/0008-5472.CAN-17-0617

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The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research
Sheila M. Reynolds, Michael Miller, Phyliss Lee, Kalle Leinonen, Suzanne M. Paquette, Zack Rodebaugh, Abigail Hahn, David L. Gibbs, Joseph Slagel, William J. Longabaugh, Varsha Dhankani, Madelyn Reyes, Todd Pihl, Mark Backus, Matthew Bookman, Nicole Deflaux, Jonathan Bingham, David Pot and Ilya Shmulevich
Cancer Res November 1 2017 (77) (21) e7-e10; DOI: 10.1158/0008-5472.CAN-17-0617
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