Table 1

Primers and probes used for digital SNP analysis

ChSNPsForward primerReverse primerInternal primerMolecular Beacon-green (fluorescein)Molecular Beacon-red (Hex)
1pCGAP-C-51904CCCTGGACCCCCTGATGGGCCGAGTCAGTGGCAAAAGGCCGAGTCAGTGGCAAAAGCACGCCGAGCTCGCTCCGGAACGTGCACGCCGAGCTCACTCCGGAACGTG
1pCGAP-C-53916ACAGCTTGGGAACGCAGAGGTGTCTGATTTGCCACCTGGATTGTCTGATTTGCCACCTGGATCACGCCGTAACTGAACGTGCTCGTGCACGCCGTAACTCAACGTGCTCGTG
1pCGAP-C-50319CAGGGCAAGACGCTGTGGTAACAGAATGTGCTTCCCTCCCAACAGAATGTGCTTCCCTCCCCACGCTGCCCAGCGCACGGCCGTGCACGCTGCCCAGTGCACGGCCGTG
1pAA290678AGCAGCATGACTGAACATCGACACTTACCTGACAGCGGATGACACTTACCTGACAGCGGATCACGAGGCCAACGACGAGAGCCCACGTGCACGAGGCCAACGCCGAGAGCCCACGTG
15qCGAP-C-2077CAAGACTGTAAGAACGTAGGAGTCTCTATTTATTTGTCCTCTTAGTGAAGGAAGGATGCTCGCACGTTAGACTTTGACCCAGAGCCGTGCACGTTAGACTTTGACCCAGCGCGTG
15qCGAP-C-1861ACAGCCATTTATTATGTTTACTTGGAGAATAATTGTGATAAGAATTCCCCCCCACCAAAATCACCTCCCACGAGCCAACACGGAGGTGACGTGCACGAGCCAACATGGAGGTGACGTG
15qCGAP-C-362TCACACCTGAGGGGGAAGAGCCATAGGAAGGTGAGGAATGTCATCTGTAGTCCAAGGTCCACGCTGACGAGACACAGAGACCTCGTGCACGGACGAGACGCAGAGACCTCGTG
15qCGAP-C-425GTCTCACTTTCTTGTCTAGGCTGAGGAATAACTGGATTTCATCGGTGATTAAGTATTCCCCACCCCACGAAGACTCACCAGAACAGGGCGTGCACGAAGACTCACCAGAAGAGGGCGTG
8pCGAP-C-3833GCCCAACACTGAGCTCTTTCGGTCTGATGTCAGTAACGGGGTCTGATGTCAGTAACGGCACGTTGCTCTTCAATTCCGTTCCGTGCACGTTGCTCTTCAGTTCCGTTCCGTG
8pCGAP-C-1596CCACTTGGGTCTCTTTCAAGCAGAAAAACAGACTAAGGCGGCTTTAGAACAGGAACGCACGTCAAGTGAATGTTCCTTTCGTCGTGCACGTCAAGTGAATTTTCCTTTCGTCGTG
8pCGAP-C-28254GAAATCAGGTTAGTTTAGTCTACAGCGTGTGTTGAGATAAATTCAGATACGTGTGTTGAGATAAATTCAGATACCACGCGATGACTACTCTCTCTTGCCGTGCACGCGATGATTACTCTCTCTTGCCGTG
8pCGAP-C-1745CATGAAAGGAAAGGGTGCCAGCGACTTCACCTAAACCGCTGAATGCTCTGCCATGAGCACGGCTGCTTGCGGCTCATCGTGCACGTGCTGCTTGTGGCTCATCGTG
8pCGAP-C-32628AAATGGGAGCAGTGAGTGGCCCCTCCTAAGCCAGCTCACCCCTCCTAAGCCAGCTCACCACGGAACAACTGTTGAATGATGCGTGCACGGAACAACTGCTGAATGATGGCGTG
8pCGAP-C-1085CACTGAATGCTCTGCCATGAAACCTGTCCTTGTGGGTGATGGTGATGATCACTGTGCTGCCACGATGAGCCACAAGCAGCACGTGCACGATGAGCCGCAAGCAGCCGTG
18qCGAP-C-1239AAGGATGGCGCACGCTGGTCACTATCTCCCGGTTGTCGTCACTATCTCCCGGTTGTCGCACGTGGGAGGACAGGGTACGCGTGCCAGGGGAGAACGGGGTACGCGTG
18qCGAP-C-700CTGAAACTAATGAGGTGCTAAATCAGCCCATTGCATTATCATCGCATTCTTTGACCTTTCACCAATCACGTATCCTTCCATGAAATTGGCGTGCACGTATCCTTCCGTGAAATTGGCGTG
18qCGAP-C-331GACAAAGAGGCAGTTTCTGTAGTTTGTTCATTAATTTCACTTACAGGAAACTTACAGGAATGGCATGGCCACGTTGAGACTACGTGGCCATCGTGCACGTTGAGACTATGTGGCCATGCGTG
18qCGAP-C-801AGATGTCAGTTTGAATGTATTCCTGTGAGTCTCACTCATATTTTCGGGTGAGTCTCACTCATATTTTCGGGCACGTATTCCTGATGTTTTCCTTTCGTGCACGTATTCCTGATCTTTTCCTTTCGTG
18qCGAP-C-1432GGAGAAATTTCTTTGATTTATGCTGTTTATCTTAGTGTTTCTGGCCCTTGGTCTTTATTATTAGATTGCACGTGTGAATTGCAGGTTTCCCGTGCACGATGTGAATTGTAGGTTTCCACGTG
18qCGAP-C-1468AGCGAGCATCAGAATCACCTCGGGACAAGCAGCATCTGCAACACTTAGGAAGGTCTCACGTGGGGCTTACAAATTAGTATCGTGCACGTGGGGCTTACGAATTAGTATCGTG
5q486GGACTACAGGCCATTGCAGAATCCAGCATATCGTCTTAGTGTTCCAGCATATCGTCTTAGTGTCACGGTGAAATGTACGGGCTTACTCGTGCACGGTGAAATGTATGGGCTTACTACGTG
5q310AGAGGATGAGCATGCTGGTGGAGGTTACTCTGGATGCACTAGGTTACTCTGGATGCACTCACGGTAGGAAGACAGCGCGAGCGTGCACGAATCCAATGCCACAGCGCTGCGTG
5q1756GTCACAAGCCTTTCCGTGTGAAAGGTATAGGTTTTACTGGTGAAGTTGGGGTATAGGTTTTACTGGTGAAGTTGGCACGTCTGCGTCGTCTTCTGCCGTGCACGATCTGCGTCTTCTTCTGCCGTG
5q1960AGGGGCAGCAACTGATGAAAAGCTTGGTCAATGTCACTGAGAGACTTGGTCAATGTCACTGAGAGACACGGAAAATACTCCAGTTTGCTTCGTGCACGGAAAATACTCCGGTTTGCCGTG