Primers and probes used for digital SNP analysis
| Ch | SNPs | Forward primer | Reverse primer | Internal primer | Molecular Beacon-green (fluorescein) | Molecular Beacon-red (Hex) |
|---|---|---|---|---|---|---|
| 1p | CGAP-C-51904 | CCCTGGACCCCCTGATGG | GCCGAGTCAGTGGCAAAAG | GCCGAGTCAGTGGCAAAAG | CACGCCGAGCTCGCTCCGGAACGTG | CACGCCGAGCTCACTCCGGAACGTG |
| 1p | CGAP-C-53916 | ACAGCTTGGGAACGCAGAGG | TGTCTGATTTGCCACCTGGAT | TGTCTGATTTGCCACCTGGAT | CACGCCGTAACTGAACGTGCTCGTG | CACGCCGTAACTCAACGTGCTCGTG |
| 1p | CGAP-C-50319 | CAGGGCAAGACGCTGTGGT | AACAGAATGTGCTTCCCTCCC | AACAGAATGTGCTTCCCTCCC | CACGCTGCCCAGCGCACGGCCGTG | CACGCTGCCCAGTGCACGGCCGTG |
| 1p | AA290678 | AGCAGCATGACTGAACATC | GACACTTACCTGACAGCGGAT | GACACTTACCTGACAGCGGAT | CACGAGGCCAACGACGAGAGCCCACGTG | CACGAGGCCAACGCCGAGAGCCCACGTG |
| 15q | CGAP-C-2077 | CAAGACTGTAAGAACGTAGG | AGTCTCTATTTATTTGTCCTCTT | AGTGAAGGAAGGATGCTCG | CACGTTAGACTTTGACCCAGAGCCGTG | CACGTTAGACTTTGACCCAGCGCGTG |
| 15q | CGAP-C-1861 | ACAGCCATTTATTATGTTTACTTGG | AGAATAATTGTGATAAGAATTCCCC | CCCACCAAAATCACCTCC | CACGAGCCAACACGGAGGTGACGTG | CACGAGCCAACATGGAGGTGACGTG |
| 15q | CGAP-C-362 | TCACACCTGAGGGGGAAG | AGCCATAGGAAGGTGAGGAA | TGTCATCTGTAGTCCAAGGTC | CACGCTGACGAGACACAGAGACCTCGTG | CACGGACGAGACGCAGAGACCTCGTG |
| 15q | CGAP-C-425 | GTCTCACTTTCTTGTCTAGGCTG | AGGAATAACTGGATTTCATCGG | TGATTAAGTATTCCCCACCC | CACGAAGACTCACCAGAACAGGGCGTG | CACGAAGACTCACCAGAAGAGGGCGTG |
| 8p | CGAP-C-3833 | GCCCAACACTGAGCTCTTTC | GGTCTGATGTCAGTAACGG | GGTCTGATGTCAGTAACGG | CACGTTGCTCTTCAATTCCGTTCCGTG | CACGTTGCTCTTCAGTTCCGTTCCGTG |
| 8p | CGAP-C-1596 | CCACTTGGGTCTCTTTCAA | GCAGAAAAACAGACTAAGGC | GGCTTTAGAACAGGAACG | CACGTCAAGTGAATGTTCCTTTCGTCGTG | CACGTCAAGTGAATTTTCCTTTCGTCGTG |
| 8p | CGAP-C-28254 | GAAATCAGGTTAGTTTAGTCTACAGC | GTGTGTTGAGATAAATTCAGATAC | GTGTGTTGAGATAAATTCAGATAC | CACGCGATGACTACTCTCTCTTGCCGTG | CACGCGATGATTACTCTCTCTTGCCGTG |
| 8p | CGAP-C-1745 | CATGAAAGGAAAGGGTGCC | AGCGACTTCACCTAAACCG | CTGAATGCTCTGCCATGAG | CACGGCTGCTTGCGGCTCATCGTG | CACGTGCTGCTTGTGGCTCATCGTG |
| 8p | CGAP-C-32628 | AAATGGGAGCAGTGAGTGGC | CCCTCCTAAGCCAGCTCAC | CCCTCCTAAGCCAGCTCAC | CACGGAACAACTGTTGAATGATGCGTG | CACGGAACAACTGCTGAATGATGGCGTG |
| 8p | CGAP-C-1085 | CACTGAATGCTCTGCCATGA | AACCTGTCCTTGTGGGTGAT | GGTGATGATCACTGTGCTGC | CACGATGAGCCACAAGCAGCACGTG | CACGATGAGCCGCAAGCAGCCGTG |
| 18q | CGAP-C-1239 | AAGGATGGCGCACGCTGG | TCACTATCTCCCGGTTGTCG | TCACTATCTCCCGGTTGTCG | CACGTGGGAGGACAGGGTACGCGTG | CCAGGGGAGAACGGGGTACGCGTG |
| 18q | CGAP-C-700 | CTGAAACTAATGAGGTGCTAAATCA | GCCCATTGCATTATCATCG | CATTCTTTGACCTTTCACCAAT | CACGTATCCTTCCATGAAATTGGCGTG | CACGTATCCTTCCGTGAAATTGGCGTG |
| 18q | CGAP-C-331 | GACAAAGAGGCAGTTTCTGTAGTT | TGTTCATTAATTTCACTTACAGGAA | ACTTACAGGAATGGCATGGC | CACGTTGAGACTACGTGGCCATCGTG | CACGTTGAGACTATGTGGCCATGCGTG |
| 18q | CGAP-C-801 | AGATGTCAGTTTGAATGTATTCCTG | TGAGTCTCACTCATATTTTCGGG | TGAGTCTCACTCATATTTTCGGG | CACGTATTCCTGATGTTTTCCTTTCGTG | CACGTATTCCTGATCTTTTCCTTTCGTG |
| 18q | CGAP-C-1432 | GGAGAAATTTCTTTGATTTATGC | TGTTTATCTTAGTGTTTCTGGC | CCTTGGTCTTTATTATTAGATTG | CACGTGTGAATTGCAGGTTTCCCGTG | CACGATGTGAATTGTAGGTTTCCACGTG |
| 18q | CGAP-C-1468 | AGCGAGCATCAGAATCACCT | CGGGACAAGCAGCATCT | GCAACACTTAGGAAGGTCT | CACGTGGGGCTTACAAATTAGTATCGTG | CACGTGGGGCTTACGAATTAGTATCGTG |
| 5q | 486 | GGACTACAGGCCATTGCAGAA | TCCAGCATATCGTCTTAGTGT | TCCAGCATATCGTCTTAGTGT | CACGGTGAAATGTACGGGCTTACTCGTG | CACGGTGAAATGTATGGGCTTACTACGTG |
| 5q | 310 | AGAGGATGAGCATGCTGGTGG | AGGTTACTCTGGATGCACT | AGGTTACTCTGGATGCACT | CACGGTAGGAAGACAGCGCGAGCGTG | CACGAATCCAATGCCACAGCGCTGCGTG |
| 5q | 1756 | GTCACAAGCCTTTCCGTGTGAAA | GGTATAGGTTTTACTGGTGAAGTTGG | GGTATAGGTTTTACTGGTGAAGTTGG | CACGTCTGCGTCGTCTTCTGCCGTG | CACGATCTGCGTCTTCTTCTGCCGTG |
| 5q | 1960 | AGGGGCAGCAACTGATGAAAAG | CTTGGTCAATGTCACTGAGAGA | CTTGGTCAATGTCACTGAGAGA | CACGGAAAATACTCCAGTTTGCTTCGTG | CACGGAAAATACTCCGGTTTGCCGTG |