Binding capacities to immunopurified HLA-DR molecules NY-ESO-1 peptides
IC50s are expressed in nm and have been evaluated from at least three independent experiments. The biotinylated peptides used at indicated concentrations in these assays are the following: HA 306–318 (PKYVKQNTLKLAT) for DR1 (1 nm), DR4 (30 nm), DR11 (40 nm), and DRB5 (10 nm); MT 2–16 (AKTIAYDEEARRGLE) for DR3 (200 nm); YKL (AAYAAAKAAALAA) for DR7 (5 nm); B1 21–36 (TERVRLVTRHIYNREE) for DR13 (500 nm); A3 152–166 (EAEQLRRAYLDGTGVE) for DR15 (30 nm); Lo1 191–120 (ESWGAVWRIDTPDKLTGPFT) for DRB3 (10 nm); and E2/E168 (AGDLLAIETDKATI) for DRB4 (3 nm). IC50s for the active peptides are <1000 nm and are indicated in bold (19) .
Allele frequency | Alleles | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
DR1 | DR3 | DR4 | DR7 | DR11 | DR13 | DR15 | DRB3 | DRB5 | DRB4 | |
Peptides | ||||||||||
NY-ESO-1 119–143 | 20 | >10,000 | 12 | 49 | 5 | >10,000 | 40 | 800 | 43 | 125 |
NY-ESO-1 119–133 | 220 | >10,000 | 13 | 63 | 1630 | >10,000 | 400 | 1,830 | 8,330 | 1,830 |
NY-ESO-1 121–138 | 65 | >10,000 | 20 | 13 | 38 | >10,000 | >10,000 | 3,000 | 600 | >10,000 |
NY-ESO-123–137 | 18 | >10,000 | 27 | 11 | 11 | >10,000 | >10,000 | 1,250 | 775 | >10,000 |
NY-ESO-1 129–143 | 1,670 | >10,000 | 1050 | 333 | 550 | >10,000 | 8,000 | >10,000 | 550 | 175 |