Table 2

Differentially expressed genes between different outcome groups at 5 yearsa

A total of 80 cDNAs were found to be differentially expressed between the different outcome groups at 5 years.

Accession IDbGene nameFold changecPFDRd (%)
AA131240 EST 6.40.00010.1
AA598508 CRABP2 5.60.01303.9
AA621201solute carrier family 30 (zinc transporter) member 35.20.01104.1
H10959deleted in bladder cancer chromosome region candidate5.10.01704.7
AA448394Homo sapiens mRNA for KIAA1783 protein, partial cds−4.40.00010.1
AA436401TU3A protein (TU3A)4.20.01804.6
R98074betaine-homocysteine methyltransferase 2 (BHMT2)−4.20.00010.1
AA454572minichromosome maintenance deficient (Saccharomyces cerevisiae) 23.90.00933.1
AA252470 Homo sapiens cDNA FLJ11606 fis −3.70.00010.1
AA600214putative integral membrane transporter (LC27)3.70.02906.4
H93086 EST −3.50.00472.1
AA456088 EPHB3 3.40.02906.4
AA446005 DKFZP434N061 protein −3.30.00010.1
AA449463 PI-3-kinase-related kinase SMG-1 −3.30.00401.9
T94293ESTs, highly similar to PA2X−3.30.00401.9
H21943 thymopoietin 3.20.03007.1
N91887thymosin β identified in neuroblastoma cells3.10.03607.1
R73672Homo sapiens, clone IMAGE:38815493.10.01404.1
T67045 DKFZP434N061 protein −3.10.00010.1
N52394 hypothetical protein FLJ20008 −30.03007
N53581phosphodiesterase 4C, cAMP-specific−30.00010.1
N21550 EST −2.90.00010.1
T86714 EST −2.90.03507
AA487590 novel human gene mapping to chromosome 13 −2.80.04608.7
H19105ESTs, weakly similar to TNP12.80.00010.1
H84154cyclin D2 (CCND2)2.80.04508.7
W15574 EST −2.80.00562.1
AA062802 KIAA0354 KELCH-related 2.70.00010.1
AA481758heat shock Mr 40,000 protein 1 (HSPF1)2.70.00010.1
AA490144 EST 2.70.00010.1
H10045vav3 oncogene (VAV3)−2.70.01604.3
R31673 EST −2.70.00502
R97226 PI-3-kinase-related kinase SMG-1 −2.70.01404
T91807 FLJ10154 −2.70.00010.1
T99793 meningioma-expressed antigen 6 −2.70.00401.9
AA429657 KIAA0080 protein 2.60.02405.6
AA478950 nuclear factor of activated T-cells 5 −2.60.00010.1
AA844831carboxypeptidase A2 (pancreatic) (CPA2)2.60.01904.8
N69661TPA-regulated locus−2.60.00010.1
R55334ESTs, weakly similar to B34087 hypothetical protein−2.60.00010.1
  • a The 40 most differential expressed cDNAs between the two groups.

  • b ID, identification.

  • c A positive fold change indicates the poor outcome group had relatively higher expression; a negative value indicates the good outcome group had relatively higher expression.

  • d An estimate of the FDR shown for each gene.