Table 2

List of methylation-dependent genes up-regulated by epigenetic treatments

CloneChromosomeGene bankGene nameDescriptionLocation
CpG17E7a11p15NM_013250 ZNF215 Novel imprinted zinc finger protein 215Promoter and 1st exon
CpG18A11a11q24NM_001274 CHEK1 CHK1 checkpoint homologue (S. pombe)Promoter and 1st exon
CpG18G8a19p12NM_138330 TIZ TRAF6-binding zinc finger proteinPromoter and 1st exon
CpG21B1a1q32NM_015434 DKFZP434B168 DKFZP434B168 proteinPromoter and 1st exon
CpG27E8a19q13AK023102 FLJ13040 Hypothetical protein FLJ13040First exon
CpG42E1018p11NDbPredicted geneTwinscan gene predictionsFirst exon
CpG5B6a12q13NM_000785 CYP27B1 Cytochrome P450, subfamily XXVIIBPromoter and 1st exon
CpG6B6a20p12AL137678 vyto SEL1L homologuePromoter and 1st exon
CpG79F12a15q25AL110434ESTFunction unknownND
MP2D2a2p14NDNDGenscan gene predictionsND
MP3F219p13X06581 ERCC-1 DNA excision repair proteinPromoter
SC11E2a19p13NDNDNo gene identified in this regionND
SC11H101q22NM_032323 MGC13102 Hypothetical protein MGC13102Exon 3
SC15E7a14q23NDPredicted geneGenscan gene predictionsPromoter and 1st exon
SC15H6a6p21NM_021058 H2BFR H2B histone family, member RFirst exon
SC18E919p13X06581 ERCC-1 DNA excision repair proteinPromoter
SC18F11a12p13NDPredicted geneGenscan gene predictionsND
SC18C93q21BI833804 Seefor β-1,4 mannosyltransferase homologueExon 5
SC19F1a1q23AB029012 KIAA1089 Hypothetical protein KIAA1089Promoter and 1st exon
SC21G11a14q23NM_021979 HSPA2 Heat shock 70kD protein 2First exon
SC23B111q13BI085096 Reemay β-1,4 mannosyltransferase homologueExon 3
SC26B7a8p23R18473 EST Function unknownND
SC2A2Xq13ND ND No gene identified in this regionND
SC33C8a2p23NM_024322 MGC11266 Hypothetical protein MGC11266Promoter and 1st exon
SC40C8a6p22NM_003522 H2BFG H2B histone family, member GPromoter and 1st exon
SC4H4a6p21NM_002121 HLA-DPB1 Major histocompatibility complex, class II, DPPromoter and 1st exon
SC5A4a8q21ND Sneyly Acembly gene predictionsFirst exon
SC5D315q22NM_032857 MRPL56 β-LactamasePromoter and 1st exon
SC74D210q24BG208726 Kloymy Acembly gene predictionsPromoter and 1st exon
SC7B11a19q13BE646494 Sposee Acembly gene predictionsPromoter and 1st exon
SC87F10a1p36NM_001412 EIF1A Eukaryotic translation initiation factor 4CPromoter and 1st exon
SC89F26q13NM_018665 HAGE DEAD-box proteinPromoter and 1st exon
SC89G26q13NM_018665 HAGE DEAD-box proteinPromoter and 1st exon
SC8A1019q13X06581 ERCC-1 DNA excision repair proteinPromoter
  • a Hyperacetylated histones detected based on microarray analysis (see detail in the text).

  • b Not determined.