Table 3

List of methylation-independent genes up-regulated by epigenetic treatments

Clone NameChromosomeGene bankGene nameDescriptionLocation
CpG10D44q34NDaNDNo gene identified in this regionND
CpG11D414q31NDNDNo gene identified in this regionND
CpG11G1219q13BI194899NDEST sequenceND
CpG11H5b11q12NM_022830 FLJ22347 Hypothetical protein FLJ22347Promoter and 1st exon
CpG12E10b20p13X17567 snRNP B snRNP B proteinPromoter
CpG12F10b19q13NM_013362 ZNF225 Zinc finger protein 225Promoter and 1st exon
CpG13E1016q24AK056131.1 MGC13198 Hypothetical protein MGC13198Promoter and 1st exon
CpG13F1016q22NM_014062 ART-4 ART-4 proteinPromoter and 1st exon
CpG14B46p22.2NM_003543 H4FH H4 histone family, member HFirst exon
CpG14F108q11X74794 MCM4 Maintenance deficient 4 homologue proteinPromoter and 1st exon
CpG15A318p11NDNDNo gene identified in this regionND
CpG15B46p22NM_003543 H4FH H4 histone family, member HFirst exon
CpG15F10bNDNDNDSequence not determinedND
CpG18G110q11NDNDNo gene identified in this regionND
CpG27E3b19q13NDNDFGENESH Gene Predictions (C19001774)Promoter and 1st exon
CpG28H8NDNDNDNo matched sequenceND
CpG32G11q21NM_003528 H2BFO H2B histone family, member QPromoter and 1st exon
CpG32H522q12NDNDFGENESH Gene Predictions (C22000342)Promoter and 1st exon
CpG42B6NDNDNDSequence not determinedND
CpG42B77q33NM_033139 CALD1 Caldeson 1 transcript variant 4Promoter and 1st exon
CpG64A419q13NM_002287 LAIR1 Leukocyte-associated Ig-like receptor 1, isoformSecond intron
CpG64F1021q21AF142099.1 ADAMTS5 Disintegrin-like and metalloproteasePromoter and 1st exon
CpG66A46p22NM_003543 H4FH H4 histone family, member HFirst exon
CpG67D110q25NDNDNo gene identified in this regionND
CpG6E617p11BC020774 GNG2 Guanine nucleotide binding protein (G protein)Promoter and 1st exon
CpG71A63q25NM_022736 FLJ14153 Hypothetical protein FLJ14153ND
CpG79B10b7p22NDNDNo gene identified in this regionND
CpG79H55q13NDNDNo gene identified in this regionND
CpG7A112q13NM_019014 Rpo1-2 Similar to DNA-directed RNA polymerase IPromoter and 1st exon
CpG7B6b2q37NDPredicted geneGenscan gene predictionsND
DL2C84q34NDNDNo gene identified in this regionND
DL3D1b11q12AK001301.1 FLJ10439 Hypothetical protein FLJ10439Promoter
DL3D67q33AK056225 FLJ31663 cDNA FLJ31663, similar to myotrophinPromoter and 1st exon
DL3G3b19p13NM_021235 EPS15R Epidermal growth factor receptor substratePromoter and 1st exon
MP1A9b11q23NM_000615 NCAM1 Neural cell adhesion molecule 1Promoter and 1st exon
MP1G1b2q31AB046824 KIAA1604 Hypothetic protein KIAA1604First exon
MP2A6bNDNDNDSequence not determinedND
MP2B96p21NM_021064 H2AFP H2A histone family, member PPromoter and 1st exon
MP2G7b20q13NM_007019 UBE2C Ubiquitin carrier protein E2-CPromoter and 1st exon
MP2G97q36NDNDNo gene identified in this regionND
MP2H11b2p14NDPredicted geneTwinscan gene predictionsND
MP3B97p22NDNDNo gene identified in this regionND
MP3E5b3q23AB002330 KIAA0332 Human mRNA for KIAA0332 genePromoter and 1st exon
PY1B11b15q15BQ417318 Reepor Acembly gene predictionsFirst exon
PY1E1b1q21NM_003548 H4F2 Histone H4 family 2Promoter and 1st exon
PY1F620p12AK055700.1 C20orf30 Chromosome 20 open reading frame 30Promoter and 1st exon
SC10B6b3q26NM_004991 MDS1 Myelodysplasia syndrome protein 1Exon 2
SC10H3bNDaNDNDSequence not determinedND
SC10H615q14AB011132 KIAA0560 KIAA0560 proteinPromoter and 1st exon
SC10H94q34NDNDNo gene identified in this regionND
SC11D12NDNDNDSequence not determinedND
SC12B77p15NM_006547 KOC1 IGF-II mRNA-binding protein 3Promoter and 1st exon
SC12E16p21NM_003897 IER3 Immediate early response 3, isoformPromoter and 1st exon
SC13C2b2p23BC015430Predicted geneSimilar to transcription factor AKNAPromoter and 1st exon
SC13E115q22NM_053000 TIGA1 TIGA1Promoter and 1st exon
SC14F1NDaNDNDNo gene identified in this regionND
SC15A10b10q22NDPredicted geneTwinscan gene predictionsND
SC15A8b7p14AA478133 Beyku Acembly gene predictionsPromoter and 1st exon
SC15E3Xq26NM_006649 SDCCAG16 Serologically defined colon cancer antigen 16Promoter and 1st exon
SC17A94q31NDNDNo gene identified in this regionND
SC17C614q23NDNDNo gene identified in this regionND
SC18B4NDNDNDSequence not determinedND
SC18E1010p15NDNDNo gene identified in this regionND
SC18E1117p12NDPredicted geneGenscan gene predictionsND
SC18E12NDNDNDNo gene identified in this regionND
SC18H820q11AF287265 HCA90 Hepatocellular carcinoma-associated antigen 90Promoter and 1st exon
SC19D76q23AA360824.1 KIAA1798 Hypothetical protein KIAA 1798Promoter and 1st exon
SC19F4NDNDNDSequence not determinedND
SC22B81p31AI435457.1 FOXD3.e Forkhead box D3 transcript ePromoter and 1st exon
SC22C619p13NDNDNo gene identified in this regionND
SC28C111p13NM_005645 TAF2K TATA box binding protein (TBP)-associatedPromoter and 1st exon
SC29B121q21NM_003557 PIP5K1A Phosphatidylinositol-4-phosphate 5-kinasePromoter and 1st exon
SC29G31q32AL526221.1 TatD-Dnase Acembly gene predictionsPromoter and 1st exon
SC2F9b4q34NDNDNo gene identified in this regionND
SC37C8NDNDNDSequence not determinedND
SC37H3b19q13AB028987.2 C19orf7 Chromosome 19 open reading frame 7First intron
SC40H25q11NM_021147 UNG2 Uracil-DNA glycosylase 2Promoter and 1st exon
SC41C21q21NM_003557 PIP5K1A Phosphatidylinositol-4-phosphate 5-kinaseFirst exon
SC41D57p15AI347402ESTFunction unknownND
SC4A1119q13NM_015953 NOSIP eNOS interacting proteinPromoter and 1st exon
SC4B5NDNDNDSequence not determinedND
SC4G5b7q33NM_145808 LOC136319 Granule cell differentiation proteinPromoter and 1st exon
SC4H11b11q24NDNDNo gene identified in this regionND